+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Campylobacter infans

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CINF_1184 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CINF_1208 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CINF_0450 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CINF_1184 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CINF_1208 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CINF_1165 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CINF_0450 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CINF_0170 xth; exodeoxyribonuclease III (exonuclease III) K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CINF_1612 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CINF_1160 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E CINF_0159 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A E CINF_0880 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B E CINF_0175 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C E CINF_0523 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CINF_1154 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CINF_1160 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CINF_0773 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CINF_0774 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CINF_1534 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CINF_0748 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CINF_1019 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CINF_0860 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E CINF_1525 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CINF_1471 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CINF_1749 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CINF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CINF_0200 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CINF_0989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CINF_0755 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CINF_1272 DEDDh 3'-5' exonuclease domain family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CINF_1127 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CINF_1160 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CINF_0523 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CINF_1154 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CINF_0198 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein E CINF_0633 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CINF_0635 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CINF_1264 hypothetical protein K03111 ssb; single-strand DNA-binding protein E CINF_1647 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CINF_1752 recA; recombinase K03553 recA; recombination protein RecA E CINF_1368 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CINF_0328 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CINF_1758 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CINF_1034 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E CINF_1752 recA; recombinase K03553 recA; recombination protein RecA E CINF_1006 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms E CINF_0780 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CINF_1612 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CINF_1199 recR; recombination protein K06187 recR; recombination protein RecR E CINF_1513 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CINF_1368 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CINF_0328 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CINF_1758 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CINF_0936 cas1; CRISPR/Cas system-associated endonuclease Cas1, type II-B K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CINF_1527 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CINF_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CINF_0568 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F CINF_0602 DNA topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F CINF_1649 DNA topoisomerase IA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CINF_0877 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CINF_1612 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CINF_1199 recR; recombination protein K06187 recR; recombination protein RecR F CINF_1160 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CINF_0159 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A F CINF_0880 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CINF_0449 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CINF_1752 recA; recombinase K03553 recA; recombination protein RecA D CINF_1513 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CINF_0198 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CINF_0633 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CINF_0635 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CINF_1264 hypothetical protein K03111 ssb; single-strand DNA-binding protein D CINF_1647 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D CINF_1698 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CINF_1499 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 5, 2025