+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Citrus sinensis (Valencia orange)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 102621668 mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 102627969 mRNA cap guanine-N7 methyltransferase 2 isoform X1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 102609768 uncharacterized protein LOC102609768 isoform X2 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 102629347 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 102628799 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 102621252 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 102607311 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 102626492 pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 102628156 uncharacterized protein LOC102628156 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 102628557 uncharacterized protein LOC102628557 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 102629299 protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 102631201 polyadenylation and cleavage factor homolog 4 isoform X3 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 102610910 polyadenylation and cleavage factor homolog 4 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 102624179 cleavage and polyadenylation specificity factor subunit 1 isoform X1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 102616738 cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102631022 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102606622 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102622087 uncharacterized protein LOC102622087 isoform X1 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102629136 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102626956 flowering time control protein FY isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 102623395 protein ANTHESIS POMOTING FACTOR 1 isoform X1 K14962 WDR82; COMPASS component SWD2
E 102622131 protein ANTHESIS POMOTING FACTOR 1 isoform X2 K14962 WDR82; COMPASS component SWD2
E 102612516 serine/threonine-protein phosphatase PP1 isozyme 2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102617266 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102613210 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102611078 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102610648 serine/threonine-protein phosphatase PP1 isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102610810 serine/threonine-protein phosphatase PP1 isozyme 4 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102624511 serine/threonine-protein phosphatase PP1-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102628888 uncharacterized protein LOC102628888 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 102618357 cleavage stimulation factor subunit 50 K14406 CSTF1; cleavage stimulation factor subunit 1
E 102615699 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102629682 cleavage stimulation factor subunit 77 isoform X1 K14408 CSTF3; cleavage stimulation factor subunit 3
E 102622533 uncharacterized protein LOC102622533 isoform X1 K06100 SYMPK; symplekin
E 102608920 uncharacterized protein LOC102608920 isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 102630807 uncharacterized protein LOC102630807 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 102614429 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 102623698 uncharacterized protein LOC102623698 K11097 SNRPE; small nuclear ribonucleoprotein E
E 102619789 uncharacterized protein LOC102619789 K11097 SNRPE; small nuclear ribonucleoprotein E
E 102609283 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 102617205 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 102616738 cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102631022 cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102606622 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102615699 cleavage stimulating factor 64 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102622533 uncharacterized protein LOC102622533 isoform X1 K06100 SYMPK; symplekin
E 102608920 uncharacterized protein LOC102608920 isoform X1 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 102612523 transcription elongation factor SPT4 homolog 2 K15171 SUPT4H1; transcription elongation factor SPT4
E 102615782 putative transcription elongation factor SPT5 homolog 1 isoform X1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 102614335 putative N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 102623892 N6-adenosine-methyltransferase non-catalytic subunit MTB K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 102612205 uncharacterized protein LOC102612205 isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 102611384 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 102617145 peptidyl-prolyl cis-trans isomerase CYP95 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 102607549 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 102613009 nuclear poly(A) polymerase 4-like isoform X3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102622420 nuclear poly(A) polymerase 1-like K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102621281 nuclear poly(A) polymerase 4-like isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102610335 nuclear poly(A) polymerase 3 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102606839 nuclear poly(A) polymerase 1 isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 102626843 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 102622461 BRCA1-associated RING domain protein 1 isoform X2 K10683 BARD1; BRCA1-associated RING domain protein 1
E 102624841 zinc finger CCCH domain-containing protein 41 isoform X1 K13192 RBM26; RNA-binding protein 26
E 102630212 RNA demethylase ALKBH9B-like K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102631062 RNA demethylase ALKBH10B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102616828 RNA demethylase ALKBH9B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 102610746 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 102613007 uncharacterized protein LOC102613007 isoform X1 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 102626268 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 102615670 RNA-binding protein Y14 K12876 RBM8A; RNA-binding protein 8A
E 102624239 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 102630056 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 102622377 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 102629336 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 102611313 THO complex subunit 4A-like isoform X1 K12881 THOC4; THO complex subunit 4
E 102618350 DEAD-box ATP-dependent RNA helicase 15 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 102621986 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102613422 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 102625418 uncharacterized protein LOC102625418 isoform X1 K13114 PNN; pinin
E 102612499 uncharacterized protein LOC102612499 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 102613079 serine/arginine-rich splicing factor SR45-like isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 102608178 uncharacterized protein LOC102608178 isoform X2 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 102612813 THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 102612717 THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 102626591 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 102630056 THO complex subunit 4B-like K12881 THOC4; THO complex subunit 4
E 102622377 THO complex subunit 4D isoform X1 K12881 THOC4; THO complex subunit 4
E 102629336 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 102611313 THO complex subunit 4A-like isoform X1 K12881 THOC4; THO complex subunit 4
E 102609464 THO complex subunit 5A-like K13174 THOC5; THO complex subunit 5
E 102619392 THO complex subunit 6 isoform X2 K13175 THOC6; THO complex subunit 6
E 102624504 THO complex subunit 7B K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 102627937 enhanced ethylene response protein 5 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 102613664 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 102626954 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 102608482 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 102629228 SAC3 family protein B isoform X1 K23719 SAC3; nuclear mRNA export protein SAC3
E 102618115 SAC3 family protein C isoform X2 K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 102621175 nuclear-pore anchor isoform X1 K09291 TPR; nucleoprotein TPR
E 102621900 protein RAE1 isoform X1 K14298 RAE1; mRNA export factor
E 102631283 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 102613333 protein transport protein SEC13 homolog B-like K14004 SEC13; protein transport protein SEC13
E 102607442 nuclear pore complex protein NUP85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 102623054 nuclear pore complex protein NUP43 K14305 NUP43; nuclear pore complex protein Nup43
E 102609104 uncharacterized protein LOC102609104 isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 102626122 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 102614572 nuclear pore complex protein NUP62 isoform X1 K14306 NUP62; nuclear pore complex protein Nup62
E 102608157 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 102630722 nuclear pore complex protein NUP93A K14309 NUP93; nuclear pore complex protein Nup93
E 102607573 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 102620159 nuclear pore complex protein NUP98A isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 102613792 nuclear pore complex protein NUP107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 102609623 nuclear pore complex protein NUP133 K14300 NUP133; nuclear pore complex protein Nup133
E 102622006 uncharacterized protein LOC102622006 K14311 NUP188; nuclear pore complex protein Nup188
E 102629346 nuclear pore complex protein NUP155 isoform X1 K14312 NUP155; nuclear pore complex protein Nup155
E 102625237 nuclear pore complex protein NUP160 isoform X6 K14303 NUP160; nuclear pore complex protein Nup160
E 102630379 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 102626983 nuclear pore complex protein NUP205 K14310 NUP205; nuclear pore complex protein Nup205
E 102617045 nuclear pore complex protein GP210 isoform X3 K14314 NUP210; nuclear pore complex protein Nup210
E 102629053 nuclear pore complex protein NUP214 K14317 NUP214; nuclear pore complex protein Nup214
E 102614875 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 102612259 zinc finger CCCH domain-containing protein 16 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 102627885 uncharacterized protein LOC102627885 K14315 NDC1; nucleoporin NDC1
E 102615718 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 102619017 aladin isoform X1 K14320 AAAS; aladin
E 102623856 mRNA export factor GLE1 isoform X1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 102612964 GTP-binding nuclear protein Ran1B K07936 RAN; GTP-binding nuclear protein Ran
E 102608440 GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 102608128 plant UBX domain-containing protein 10-like isoform X2 K18726 FAF2; FAS-associated factor 2
E 102616494 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 102630724 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 102612408 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 102609758 cell division cycle protein 48 homolog isoform X1 K13525 VCP; transitional endoplasmic reticulum ATPase
E 102611590 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 102623692 uncharacterized protein LOC102623692 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 102607777 uncharacterized protein LOC102607777 isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 102609571 protein EXPORTIN 1A isoform X1 K14290 XPO1; exportin-1
E 102620131 uncharacterized protein LOC102620131 isoform X1 K18460 XPO7; exportin-7
E 102615184 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
E 102613754 RAN GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 102614001 eukaryotic translation initiation factor 4E-1-like K03259 EIF4E; translation initiation factor 4E
E 102607064 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 102610440 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 102621232 eukaryotic initiation factor 4A-8 K03257 EIF4A; translation initiation factor 4A
E 102625009 ATP-dependent RNA helicase eIF4A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 102623826 eukaryotic initiation factor 4A-15-like K03257 EIF4A; translation initiation factor 4A
E 102624112 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 102618073 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 102621028 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 102615214 eukaryotic translation initiation factor isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102606773 protein PIR isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102613246 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102614023 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102630310 uncharacterized protein LOC102630310 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102626123 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102577977 PABP2; poly A-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 102608147 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 102615487 polyadenylate-binding protein 3 K13126 PABPC; polyadenylate-binding protein
E 102628035 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 102616823 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 102618925 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 102630388 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 102626962 uncharacterized protein LOC102626962 K07575 MCTS; malignant T-cell-amplified sequence
E 102623929 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
E 102611868 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 102628798 partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 102616813 UBP1-associated protein 2B-like isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102607748 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102608982 UBP1-associated protein 2C-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102614751 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102625620 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102618321 uncharacterized protein LOC102618321 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102621909 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 102620595 uncharacterized protein LOC102620595 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102618179 heterogeneous nuclear ribonucleoprotein 1-like isoform X2 K14411 MSI; RNA-binding protein Musashi
E 102614891 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 102622156 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 102607686 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 102624019 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 102609501 uncharacterized protein LOC102609501 isoform X2 K14416 HBS1; elongation factor 1 alpha-like protein
E 102617256 protein PELOTA 1 K06965 PELO; protein pelota
E 102616755 protein PELOTA 1-like K06965 PELO; protein pelota
E 102577996 poly(A)-binding protein 1 K14396 PABPN1; polyadenylate-binding protein 2
E 102620020 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 102625039 polyadenylate-binding protein 2-like isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 102609367 DEAD-box ATP-dependent RNA helicase 38 isoform X2 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 102624825 uncharacterized protein LOC102624825 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 102610791 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 102631101 transcription factor Pur-alpha 1 K21772 PURA; transcriptional activator protein Pur-alpha
E 102613780 SAC3 family protein A isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 102619042 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 102617245 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 102608389 uncharacterized protein LOC102608389 isoform X2 K03267 ERF3; peptide chain release factor subunit 3
E 102615436 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102617412 regulator of nonsense transcripts UPF2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 102616588 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
E 102625038 regulator of nonsense transcripts UPF3-like K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 102629022 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102622563 serine/threonine-protein phosphatase PP2A catalytic subunit-like isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102612180 serine/threonine-protein phosphatase PP2A-4 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102627524 serine/threonine-protein phosphatase PP2A-4 catalytic subunit isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102628650 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102622294 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102617320 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102608811 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102628048 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102625238 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102607891 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102625679 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102613282 serine/threonine protein phosphatase 2A regulatory subunit B''alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102612491 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102629668 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102629851 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102606617 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102607694 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102619334 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102620041 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102626720 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102612189 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 102618809 uncharacterized protein LOC102618809 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102607318 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 102626935 uncharacterized protein LOC102626935 isoform X2 K18734 SMG8; protein SMG8
E 102611390 uncharacterized protein LOC102611390 K18735 SMG9; protein SMG9
E 102630310 uncharacterized protein LOC102630310 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102626123 protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 102625301 pumilio homolog 24 K14844 PUF6; pumilio homology domain family member 6
E 102625476 myosin-2 isoform X2 K10357 MYO5; myosin V
E 102629173 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 102628638 myosin-6-like K10357 MYO5; myosin V
E 102625595 myosin-6 isoform X1 K10357 MYO5; myosin V
E 102624446 myosin-11 K10357 MYO5; myosin V
E 102617394 myosin-16 isoform X1 K10357 MYO5; myosin V
E 102620713 myosin-15 isoform X1 K10357 MYO5; myosin V
E 102614192 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 102615602 uncharacterized protein LOC102615602 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 102609390 uncharacterized protein LOC102609390 isoform X1 K13210 FUBP; far upstream element-binding protein
E 102620563 uncharacterized protein LOC102620563 isoform X1 K13210 FUBP; far upstream element-binding protein
E 102617424 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 102578002 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 102617716 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 102613486 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 102621285 elongation factor 1-gamma-like isoform X1 K03233 EEF1G; elongation factor 1-gamma
E 102609380 elongation factor 1-gamma-like K03233 EEF1G; elongation factor 1-gamma
E 102609313 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
D Other mRNA localization factors
E 102606773 protein PIR isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102612938 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102619226 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102609499 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102616323 KH domain-containing protein HEN4 isoform X2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102619376 RNA-binding KH domain-containing protein RCF3-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102611119 KH domain-containing protein HEN4 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102628082 flowering locus K homology domain isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102607969 uncharacterized protein LOC102607969 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102616634 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102578050 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102617420 KH domain-containing protein HEN4 isoform X2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102607227 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 102620678 protein argonaute 2 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102610347 protein argonaute 16 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102616587 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102622330 protein argonaute 4-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102625831 protein argonaute 7 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102617219 protein argonaute 5-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102628378 protein argonaute 10 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102630366 protein argonaute 5 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102615576 protein argonaute 4B-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102630160 protein argonaute MEL1-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 112495569 protein argonaute 5-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102630678 protein argonaute 5-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102614001 eukaryotic translation initiation factor 4E-1-like K03259 EIF4E; translation initiation factor 4E
E 102607064 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 102610440 eukaryotic translation initiation factor K03259 EIF4E; translation initiation factor 4E
E 102615436 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102613246 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102614023 DEAD-box ATP-dependent RNA helicase 37-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102614788 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 127901135 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102625181 protein decapping 5 K18749 LSM14; protein LSM14
E 102624993 decapping 5-like protein isoform X1 K18749 LSM14; protein LSM14
E 102615655 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102619574 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102625371 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102625081 uncharacterized protein LOC102625081 isoform X3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102618840 transportin-1 isoform X2 K18752 TNPO1; transportin-1
E 102618809 uncharacterized protein LOC102618809 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102607318 nonsense-mediated mRNA decay factor SMG7 isoform X1 K14409 SMG7; protein SMG7
E 102629435 zinc finger CCCH domain-containing protein 15 K18753 ZFP36L; butyrate response factor
E 102629020 zinc finger CCCH domain-containing protein 14 K18753 ZFP36L; butyrate response factor
E 102616813 UBP1-associated protein 2B-like isoform X2 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102607748 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102608982 UBP1-associated protein 2C-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102614751 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102625620 glycine-rich RNA-binding protein 2, mitochondrial K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102618321 uncharacterized protein LOC102618321 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102616770 la-related protein 1C-like isoform X1 K18757 LARP1; la-related protein 1
E 102621746 la-related protein 1A isoform X2 K18757 LARP1; la-related protein 1
E 102610519 la-related protein 1C isoform X1 K18757 LARP1; la-related protein 1
D P-body specific factors
E 102622483 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102609579 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102614642 mRNA-decapping enzyme-like protein isoform X4 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102617712 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102608898 sm-like protein LSM1A K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102628439 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 102612141 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102613630 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102620919 probable U6 snRNA-associated Sm-like protein LSm4 isoform X2 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102627562 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102615299 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102624901 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102610236 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 102625476 myosin-2 isoform X2 K10357 MYO5; myosin V
E 102629173 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 102628638 myosin-6-like K10357 MYO5; myosin V
E 102625595 myosin-6 isoform X1 K10357 MYO5; myosin V
E 102624446 myosin-11 K10357 MYO5; myosin V
E 102617394 myosin-16 isoform X1 K10357 MYO5; myosin V
E 102620713 myosin-15 isoform X1 K10357 MYO5; myosin V
E 102614192 myosin-17-like isoform X1 K10357 MYO5; myosin V
E 102609137 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 102577964 tubulin alpha chain K07374 TUBA; tubulin alpha
E 102624506 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 102606661 tubulin alpha-2 chain K07374 TUBA; tubulin alpha
E 102620032 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 102620663 tubulin alpha chain K07374 TUBA; tubulin alpha
E 102630812 uncharacterized protein LOC102630812 isoform X2 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102577999 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102613279 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 102631197 uncharacterized protein LOC102631197 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102622069 uncharacterized protein LOC102622069 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102627526 carbon catabolite repressor protein 4 homolog 4 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102615682 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102628865 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102614741 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102622681 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 107174345 putative CCR4-associated factor 1 homolog 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102626974 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102630158 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 127903028 putative CCR4-associated factor 1 homolog 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102619579 DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 102611484 protein PAT1 homolog isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 102618153 protein PAT1 homolog 1-like isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 102625105 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102631233 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102617412 regulator of nonsense transcripts UPF2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 102616588 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
E 102625038 regulator of nonsense transcripts UPF3-like K14328 UPF3; regulator of nonsense transcripts 3
E 102612216 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 102630620 YTH domain-containing protein ECT4-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 102610800 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 102619639 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 102618530 YTH domain-containing protein ECT1 K20102 YTHDF; YTH domain-containing family protein
E 102620334 YTH domain-containing protein ECT2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 102624076 YTH domain-containing protein ECT4-like K20102 YTHDF; YTH domain-containing family protein
E 102628125 YTH domain-containing protein ECT2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 102616329 oligouridylate-binding protein 1B K13201 TIA1; nucleolysin TIA-1/TIAR
E 102630644 oligouridylate-binding protein 1-like isoform X2 K13201 TIA1; nucleolysin TIA-1/TIAR
E 102577977 PABP2; poly A-binding protein 2 K13126 PABPC; polyadenylate-binding protein
E 102608147 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 102615487 polyadenylate-binding protein 3 K13126 PABPC; polyadenylate-binding protein
E 102628035 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 102616823 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 102618925 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 102628136 nuclear transport factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102614075 nuclear transport factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102609497 nuclear transport factor 2-like isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102627559 nuclear transport factor 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102615606 uncharacterized protein LOC102615606 K15026 EIF2A; translation initiation factor 2A
E 102614274 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 102621232 eukaryotic initiation factor 4A-8 K03257 EIF4A; translation initiation factor 4A
E 102625009 ATP-dependent RNA helicase eIF4A isoform X1 K03257 EIF4A; translation initiation factor 4A
E 102623826 eukaryotic initiation factor 4A-15-like K03257 EIF4A; translation initiation factor 4A
E 102624112 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 102621986 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102618073 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 102621028 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 102615214 eukaryotic translation initiation factor isoform X1 K03260 EIF4G; translation initiation factor 4G
E 102610028 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 102630751 uncharacterized protein LOC102630751 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 102609579 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102614642 mRNA-decapping enzyme-like protein isoform X4 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102622483 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102614788 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 127901135 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102625105 enhancer of mRNA-decapping protein 4-like isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102631233 enhancer of mRNA-decapping protein 4-like K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102611484 protein PAT1 homolog isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 102618153 protein PAT1 homolog 1-like isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 102617712 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102608898 sm-like protein LSM1A K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102628439 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 102612141 sm-like protein LSM3B K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102613630 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102620919 probable U6 snRNA-associated Sm-like protein LSm4 isoform X2 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 102627562 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102615299 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102624901 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102610236 sm-like protein LSM8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 102623051 5'-3' exoribonuclease 3 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 102610368 5'-3' exoribonuclease 4 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 102627664 uncharacterized protein LOC102627664 isoform X1 K07573 CSL4; exosome complex component CSL4
E 102607744 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 102617858 uncharacterized protein LOC102617858 K03681 RRP40; exosome complex component RRP40
E 102622275 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 102609391 exosome complex exonuclease RRP46 homolog isoform X1 K12590 RRP46; exosome complex component RRP46
E 102620951 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 102629532 uncharacterized protein LOC102629532 K12589 RRP42; exosome complex component RRP42
E 102615861 uncharacterized protein LOC102615861 K12586 RRP43; exosome complex component RRP43
E 102613621 exosome complex component RRP45A isoform X2 K03678 RRP45; exosome complex component RRP45
E 102626500 exosome complex component RRP45A-like isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 102613015 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 102609201 protein RRP6-like 2 isoform X1 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 102630867 uncharacterized protein LOC102630867 K12592 C1D; exosome complex protein LRP1
E 102624538 uncharacterized protein LOC102624538 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 102623093 uncharacterized protein LOC102623093 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 102621716 DExH-box ATP-dependent RNA helicase DExH9 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 102611776 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 102630388 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 102614709 tetratricopeptide repeat protein SKI3 isoform X1 K12600 SKI3; superkiller protein 3
E 102628906 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 102627526 carbon catabolite repressor protein 4 homolog 4 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102615682 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102630812 uncharacterized protein LOC102630812 isoform X2 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102577999 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102613279 general negative regulator of transcription subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 102631197 uncharacterized protein LOC102631197 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102622069 uncharacterized protein LOC102622069 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102628865 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102614741 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102622681 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 107174345 putative CCR4-associated factor 1 homolog 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102626974 probable CCR4-associated factor 1 homolog 6 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102630158 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 127903028 putative CCR4-associated factor 1 homolog 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102618037 uncharacterized protein LOC102618037 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 102610349 cell differentiation protein rcd1-like isoform X2 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 102620348 uncharacterized protein LOC102620348 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 102608334 ABC transporter I family member 19 K12608 CAF16; CCR4-NOT complex subunit CAF16
E 102620284 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 102630341 poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102621635 poly(A)-specific ribonuclease PARN-like isoform X2 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102617632 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102628348 DExH-box ATP-dependent RNA helicase DExH1 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102607120 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102628100 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102624626 DExH-box ATP-dependent RNA helicase DExH6 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102630386 uncharacterized protein LOC102630386 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 102610428 uncharacterized protein LOC102610428 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 102625661 uncharacterized protein LOC102625661 K26109 NRDE2; nuclear exosome regulator NRDE2
E 102623696 protein RST1 isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 102621451 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 102613336 uncharacterized protein LOC102613336 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 102612999 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102616210 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102626839 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102622213 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102628795 polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 102615727 polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 102616327 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102624074 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102630185 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102607235 ATP-dependent 6-phosphofructokinase 3-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102625221 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102618905 LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 102621250 heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 102606731 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 102615346 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 102627200 chaperonin CPN60-like 2, mitochondrial isoform X1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102609990 ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102625215 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102620413 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102630227 chaperonin CPN60-1, mitochondrial-like isoform X4 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102631061 chaperonin CPN60-1, mitochondrial-like isoform X1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 102617370 chaperonin CPN60-1, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 107176643 chaperonin CPN60-1, mitochondrial-like K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 102607744 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 102627664 uncharacterized protein LOC102627664 isoform X1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 102622275 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 102629532 uncharacterized protein LOC102629532 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024