+D GENES KO #

  KEGG Orthology (KO) - Cellvibrio japonicus

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:cja00010] D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CJA_1348 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CJA_0184 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CJA_2671 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_0185 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_1353 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CJA_0211 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CJA_3553 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CJA_1354 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CJA_1336 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CJA_1337 gt4H; glycosyl transferase, putative, gt4H K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_0807 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_1982 aldose 1-epimerase family protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] C 00020 Citrate cycle (TCA cycle) [PATH:cja00020] D CJA_1499 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D CJA_0756 putative citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D CJA_2001 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CJA_2571 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CJA_1505 sucA; 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CJA_1506 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_1510 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CJA_1508 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CJA_1503 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CJA_1504 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CJA_1501 Succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CJA_1502 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CJA_2642 fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CJA_2300 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_1336 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CJA_1337 gt4H; glycosyl transferase, putative, gt4H K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:cja00030] D CJA_1348 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CJA_1350 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CJA_1351 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D CJA_3099 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D CJA_2666 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CJA_0210 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CJA_1489 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CJA_0238 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_0644 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CJA_1349 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D CJA_1352 kdgA; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CJA_3096 conserved hypothetical protein K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D CJA_3098 dehydrogenase subunit K19813 gdh; glucose dehydrogenase [EC:1.1.5.9] D CJA_2000 gnl; gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_0344 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_0846 idnK; gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D CJA_0179 kdgK; ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D CJA_0184 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:cja00040] D CJA_0181 pme8C; pectin methylesterase, putative, pme8C K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D CJA_1277 pelC; pectate lyase III K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0533 pel1B; pectate lyase, putative, pel1B K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0045 pel1F; pectate lyase, putative, pel1F K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0041 pme8A; pectin methylesterase, putative, pme8A K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0042 pel1D; pectate lyase, putative, pel1D K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0053 pel1E; pectate lyase, putative, pel1E K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_3120 pel1G; pectate lyase, putative, pel1G K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0169 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D CJA_2772 uxaC; Glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D CJA_1137 uxaA; hydrolase, UxaA family K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D CJA_1109 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D CJA_3069 rspA; Starvation sensing protein rspA K08323 rspA; mannonate dehydratase [EC:4.2.1.8] D CJA_0180 D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D CJA_3434 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CJA_2116 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CJA_3016 putative L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CJA_2666 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CJA_3015 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D CJA_3017 araB; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D CJA_3062 xylulose kinase (xylulokinase) K00854 xylB; xylulokinase [EC:2.7.1.17] D CJA_3061 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D CJA_2776 short chain dehydrogenase/reductase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] C 00051 Fructose and mannose metabolism [PATH:cja00051] D CJA_2480 man26B; endo-1,4-beta mannanase, man26B K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_3338 man5A; endo-1,4-beta-mannanase man5A K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_0236 man26C; endo-1,4-beta mannanase, putative, man26C K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_2475 man5B; endo-1,4-beta mannanase, man5B K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_2770 man26A; endo-1,4-beta mannanase, man26A K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_0244 man5D; putative 1,4-beta mannosidase man5D K19355 MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_3470 man5C; endo-1,4-beta mannanase, man5C K19355 MAN; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_1272 probable NAGC-like transcription regulator yajF K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CJA_2115 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CJA_2117 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_1135 D-threo-aldose 1-dehydrogenase-like protein K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D CJA_1133 Amidohydrolase family superfamily K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120] D CJA_1138 oxidoreductase UCPA K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CJA_3061 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D CJA_0184 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CJA_2671 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_0185 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:cja00052] D CJA_0807 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CJA_2204 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CJA_2205 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CJA_0777 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CJA_2116 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CJA_0496 bgl2A; beta-galactosidase, putative, bgl2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_2610 bgl2C; beta-galactosidase, putative, bgl2C K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0532 bgl2B; beta-galactosidase, putative, bgl2B K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0246 aga27A; putative alpha-galactosidase, aga27A K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D CJA_0736 adg97B; alpha-glucosidase, putative, adg97B K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0732 glu13A; oligo-1,6-glucosidase, putative, glu13A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_1522 amy13B; alpha amylase, putative, amy13B K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0817 agd97A; alpha-glucosidase, putative, adg97A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0257 glc13A; alpha glucosidase, putative, glc13A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:cja00053] D CJA_3434 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CJA_2000 gnl; gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_0344 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_1135 D-threo-aldose 1-dehydrogenase-like protein K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D CJA_3427 NAD dependent epimerase/dehydratase family superfamily K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D CJA_3016 putative L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] C 00500 Starch and sucrose metabolism [PATH:cja00500] D CJA_0736 adg97B; alpha-glucosidase, putative, adg97B K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0732 glu13A; oligo-1,6-glucosidase, putative, glu13A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_1522 amy13B; alpha amylase, putative, amy13B K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0817 agd97A; alpha-glucosidase, putative, adg97A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_0257 glc13A; alpha glucosidase, putative, glc13A K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CJA_2116 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CJA_1140 cel3D; putative 1,4-beta-D-glucan glucohydrolase cel3D K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0223 cel3C; glucan 1,4-beta-glucosidase, putative, cel3C K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0204 cel3A; glucan 1,4-beta-glucosidase cel3A K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_1497 cel3B; glucan 1,4-beta-glucosidase, putative, cel3B K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_1633 cel9B; endo-1,4-beta glucanase, putative, cel9B K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2983 cel5B; endo-1,4-beta glucanase, cel5B K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3337 cel5E; cellulase, putative, cel5E K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_0619 cel5H; endo-1,4-beta glucanase, putative, cel5H K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2472 cel9A; endo-1,4-beta glucanase, cel9A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3010 cel5D; cellulase, putative, cel5D K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_1462 cel5A; endo-1,4-beta glucanase, cel5A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3369 cel5C; cellulase, putative, cel5C K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3305 glu5A; glucan exo-1,3-beta glucosidase, putative, glu5A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3804 cel9C; cellulase, putative, cel9C K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2959 cel5F; cellulase, putative, cel5F K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2760 cel5G; cellulase, putative, cel5G K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2473 cel6A; cellobiohydrolase, putative, cel6A K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] D CJA_1884 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D CJA_1886 gt5A; ADP-glucose:starch glucosyltransferase, gt5A K00703 glgA; starch synthase [EC:2.4.1.21] D CJA_1885 gbe13A; 1,4-alpha-glucan branching enzyme, putative, gbe13A K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CJA_1605 gt35A; carbohydrate phosphosrylase, putative, gt35A K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D CJA_2160 pul13A; pullulanase, putative, pul13A K01200 pulA; pullulanase [EC:3.2.1.41] D CJA_3161 pul13B; pullulanase, putative, pul13B K01200 pulA; pullulanase [EC:3.2.1.41] D CJA_1302 amy13J; alpha amylase, putative, amy13J K01176 AMY; alpha-amylase [EC:3.2.1.1] D CJA_0398 amy13F; alpha amylase, putative, amy13F K01176 AMY; alpha-amylase [EC:3.2.1.1] D CJA_3126 amy13I; alpha-amylase, putative, amy13I K01176 AMY; alpha-amylase [EC:3.2.1.1] D CJA_2618 amy13A; alpha amylase, putative, amy13A K01176 AMY; alpha-amylase [EC:3.2.1.1] D CJA_0731 gla15; glucan 1,4-alpha-glucosidase, putative, gla15A K01178 SGA1; glucoamylase [EC:3.2.1.3] D CJA_1882 mal77Q; 4-alpha-glucanotransferase, putative, mal77 K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D CJA_3249 cgl13A; cyclomaltodextrin glucanotransferase, putative, cgt13A K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D CJA_1402 amy13C; alpha amylase, putative, amy13C K00701 cgt; cyclomaltodextrin glucanotransferase [EC:2.4.1.19] D CJA_1999 tre37B; trehalase, putative, tre37B K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D CJA_0284 tre37A; trehalase, putative, tre37A K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CJA_1348 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CJA_1272 probable NAGC-like transcription regulator yajF K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cja00520] D CJA_2993 chi18C; endo-chitinase, putative, chi18C K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CJA_0988 chi18B; endo-chitinase, putative, chi18B K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CJA_2611 chi18D; endo-chitinase, putative, chi18D K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CJA_1182 chi18A; endo-chitinase, putative, chi18A K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CJA_0350 hex20A; N-acetyl-beta-hexosaminidase, putative, hex20A K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_0287 hex20B; beta-hexaminidase, putative, hex20B K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_3747 Chitosanase Csn46F K01233 csn; chitosanase [EC:3.2.1.132] D CJA_1163 nag9A; N-acetylhexosamine 6-phosphate deacetylase, putative, nag9A K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D CJA_1164 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D CJA_1160 BadF/BadG/BcrA/BcrD ATPase family superfamily K18676 gspK; glucosamine kinase [EC:2.7.1.8] D CJA_1272 probable NAGC-like transcription regulator yajF K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CJA_3802 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CJA_2672 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CJA_3806 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CJA_0889 Uncharacterised protein family (UPF0075) superfamily K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D CJA_2129 HAD-superfamily hydrolase, subfamily IA, variant 3 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D CJA_0857 Domain of unknown function DUF227 K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D CJA_0856 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D CJA_2796 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CJA_1784 murB; UDP-N-acetylpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CJA_3426 polysaccharide biosynthesis protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D CJA_2769 abf51A; alpha-L-arabinofuranosidase, abf51A K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D CJA_3008 xyl39A; beta-xylosidase, putative, xyl39A K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D CJA_3067 gly43J; beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D CJA_3007 gly43H; beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43H K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D CJA_3594 gly43B; xylosidase/arabinosidase, putative, gly43B K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37] D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_2116 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CJA_3434 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CJA_2204 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CJA_2205 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CJA_0777 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CJA_3427 NAD dependent epimerase/dehydratase family superfamily K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D CJA_1348 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CJA_2117 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D CJA_2115 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CJA_1884 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:cja00620] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_1336 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CJA_1337 gt4H; glycosyl transferase, putative, gt4H K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_1528 nahO; acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CJA_1354 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CJA_1129 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CJA_2740 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CJA_2741 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CJA_1753 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CJA_1131 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D CJA_1606 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D CJA_2624 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D CJA_2052 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CJA_3137 glob1; metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CJA_1688 sfcA1; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CJA_2757 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D CJA_2758 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D CJA_2756 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_2642 fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CJA_2300 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CJA_2950 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CJA_0024 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cja00630] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_1499 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D CJA_0756 putative citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D CJA_2001 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CJA_2592 MaoC-like domain protein K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D CJA_1670 HAD-superfamily hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_2703 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CJA_1061 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CJA_0421 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CJA_1352 kdgA; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CJA_1602 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D CJA_0963 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00640 Propanoate metabolism [PATH:cja00640] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_1129 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CJA_2740 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CJA_2741 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CJA_1753 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CJA_1508 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CJA_1510 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CJA_2001 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CJA_1761 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D CJA_0513 NADH-dependent butanol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:cja00650] D CJA_1411 Short-chain alcohol dehydrogenase superfamily K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CJA_1528 nahO; acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D CJA_2592 MaoC-like domain protein K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D CJA_2758 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D CJA_1503 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CJA_1504 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CJA_1501 Succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CJA_1502 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CJA_2087 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CJA_2967 hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D CJA_0664 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0759 putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0665 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:cja00660] D CJA_0664 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0759 putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0665 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CJA_1508 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CJA_1510 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CJA_1744 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D CJA_1745 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D CJA_1746 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:cja00562] D CJA_1463 suhB; extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CJA_0843 phytase domain protein K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8] D CJA_2671 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_0185 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:cja00190] D CJA_0835 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D CJA_1503 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CJA_1504 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CJA_1501 Succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CJA_1502 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CJA_2785 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D CJA_2784 petB; ubiquinol--cytochrome c reductase, cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D CJA_0873 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CJA_0868 Cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D CJA_0866 cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D CJA_0865 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D CJA_0867 coxG; cytochrome oxidase assembly factor K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D CJA_0872 uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D CJA_2634 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D CJA_2633 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D CJA_2632 cytochrome c oxidase subunit-related protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D CJA_2631 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D CJA_3226 qxtA; quinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CJA_3227 cytochrome oxidase subunit II superfamily K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CJA_1375 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D CJA_2657 cbp32B; carbohydrate binding protein, putative, cbp32B K08738 CYC; cytochrome c D CJA_3811 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CJA_3809 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CJA_3810 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CJA_3812 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CJA_3808 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CJA_3815 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CJA_3813 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CJA_3814 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CJA_0443 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D CJA_3560 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CJA_1575 polyphosphate kinase family protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:cja00710] D CJA_0211 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CJA_1353 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CJA_0184 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CJA_0210 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CJA_0238 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D CJA_2671 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_0185 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_2666 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CJA_1489 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CJA_2950 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00720 Other carbon fixation pathways [PATH:cja00720] D CJA_2950 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_2642 fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CJA_2300 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CJA_1503 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CJA_1504 sdhB; succinate dehydrogenase, iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CJA_1501 Succinate dehydrogenase cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CJA_1502 succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CJA_1510 succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CJA_1508 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CJA_2571 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CJA_2001 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CJA_1129 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CJA_2740 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CJA_2741 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CJA_1753 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CJA_1964 folD; bifunctional protein 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CJA_0205 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:cja00680] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CJA_3339 cae1C; carbohydrate esterase, putative, cae1C K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D CJA_2703 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CJA_2950 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_0184 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_3553 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CJA_0232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1071 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CJA_2960 ACT domain protein/phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D CJA_2041 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] C 00910 Nitrogen metabolism [PATH:cja00910] D CJA_0963 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D CJA_0330 nitrate permease K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CJA_0009 nrtA; ABC transporter nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0529 nitrate-binding protein nrtA precursor, periplasmic K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0010 possible nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0528 nitrate ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0939 nitrate transporter system, ATPase component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_0011 nrtC; ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_0324 nirB; nitrite reductase [NAD(P)H], large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D CJA_0325 nirD; nitrite reductase [NAD(P)H], small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D CJA_1546 norB; nitric oxide reductase qNor type K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D CJA_1199 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D CJA_2161 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D CJA_2152 gdhA; Glu/Leu/Phe/Val dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_3147 glutamate synthase large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CJA_3146 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CJA_0012 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D CJA_2638 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:cja00920] D CJA_2349 cysP; thiosulfate ABC transporter, periplasmic thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CJA_2243 sulfate ABC transporter, periplasmic binding protein component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CJA_2348 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2242 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2347 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2241 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2240 cysA-2; sulfate/thiosulfate import ATP-binding protein cysA 2 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CJA_2324 putative ABC transporter, substrate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2256 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2323 AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2321 atsB; AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2257 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D CJA_2343 AtsC K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_2258 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_2335 putative alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D CJA_2336 conserved hypothetical protein K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D CJA_2271 putative sulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D CJA_2322 alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D CJA_2266 Alkanesulfonate monooxygenase (FMNH2-dependentaliphatic sulfonate monooxygenase) K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D CJA_2344 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D CJA_2121 cysNC; sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CJA_2122 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CJA_1599 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D CJA_0312 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D CJA_2042 cysH; 3'-phosphoadenylylsulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D CJA_2531 putative sulfite reductase, flavoprotein component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D CJA_2535 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D CJA_2954 Molybdopterin oxidoreductase Fe4S4 domain family K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D CJA_1080 cysI; sulphite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D CJA_2345 Rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_3119 rhdA; rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_1940 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_0364 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_0522 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_2237 srpH; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_2768 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CJA_0119 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D CJA_1758 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:cja00061] D CJA_1129 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CJA_2740 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CJA_2741 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CJA_1753 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CJA_1677 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CJA_0101 acpC; acyl carrier protein K02078 acpP; acyl carrier protein D CJA_0108 acyl carrier protein K02078 acpP; acyl carrier protein D CJA_1675 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CJA_1432 probable beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D CJA_0097 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_0749 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_1678 Beta-ketoacyl synthase, N-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0117 fabF-2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0116 putative 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_1676 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_2303 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_0750 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D CJA_1123 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CJA_1411 Short-chain alcohol dehydrogenase superfamily K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CJA_1075 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:cja00071] D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CJA_3460 conserved hypothetical protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D CJA_1075 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:cja00561] D CJA_1644 putative glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CJA_1674 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CJA_0054 uvs118; Uvs118 K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CJA_2206 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CJA_3108 lipase family protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D CJA_0246 aga27A; putative alpha-galactosidase, aga27A K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:cja00564] D CJA_1957 NAD-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D CJA_0054 uvs118; Uvs118 K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CJA_2206 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CJA_2715 putative outer membrane phospholipase A precursor K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D CJA_2892 ugpQ; Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CJA_3224 Glycerophosphoryl diester phosphodiesterase family K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CJA_1117 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CJA_0669 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CJA_3140 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CJA_1787 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CJA_2691 Phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D CJA_0991 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:cja00565] D CJA_2715 putative outer membrane phospholipase A precursor K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:cja00600] D CJA_3306 gly30A; glycoside hydrolase family 30, gly30A K01201 GBA; glucosylceramidase [EC:3.2.1.45] D CJA_0496 bgl2A; beta-galactosidase, putative, bgl2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_2610 bgl2C; beta-galactosidase, putative, bgl2C K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0532 bgl2B; beta-galactosidase, putative, bgl2B K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0246 aga27A; putative alpha-galactosidase, aga27A K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D CJA_0350 hex20A; N-acetyl-beta-hexosaminidase, putative, hex20A K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_0287 hex20B; beta-hexaminidase, putative, hex20B K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism D CJA_2715 putative outer membrane phospholipase A precursor K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D CJA_2715 putative outer membrane phospholipase A precursor K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:cja00592] D CJA_2715 putative outer membrane phospholipase A precursor K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:cja01040] D CJA_1615 tesA; acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CJA_0197 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:cja00230] D CJA_2908 conserved hypothetical protein TIGR00052 K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CJA_2150 hydrolase, NUDIX family domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CJA_0311 nudE; ADP compounds hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_0644 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CJA_1757 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CJA_2748 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D CJA_1629 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CJA_2596 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D CJA_1630 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D CJA_1144 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D CJA_1145 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D CJA_2827 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D CJA_2492 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CJA_2747 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CJA_1946 ushA; 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D CJA_0310 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D CJA_1969 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CJA_3204 YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CJA_3787 putative hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CJA_2104 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CJA_1477 ndk; nucleotide diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CJA_0122 rdgB; non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CJA_0546 xdhA; xanthine dehydrogenase, XdhA subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D CJA_0547 xdhB; xanthine dehydrogenase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D CJA_2103 guaA; GMP synthase, C-domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CJA_0551 guanine aminohydrolase K01487 guaD; guanine deaminase [EC:3.5.4.3] D CJA_3569 guanylate kinase (GMP kinase) K00942 gmk; guanylate kinase [EC:2.7.4.8] D CJA_1569 nrdA; ribonucleoside reductase, large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CJA_1568 nrdB; ribonucleoside reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CJA_1246 deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) (dGTP triphosphohydrolase) K01129 dgt; dGTPase [EC:3.1.5.1] D CJA_3571 spoT; guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CJA_3558 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CJA_2575 GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D CJA_1555 probable adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CJA_0739 Adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CJA_1452 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CJA_3519 putative adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D CJA_0254 adenylate cyclase, class I K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D CJA_3073 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CJA_0563 putative adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D CJA_1346 decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D CJA_0578 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D CJA_0584 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2] D CJA_2084 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CJA_2574 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CJA_2905 uvs099; Uvs099 K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D CJA_0863 bis(5'-nucleosyl)-tetraphosphatase, symmetrical K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D CJA_1599 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D CJA_2121 cysNC; sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CJA_2122 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CJA_0550 Transthyretin-like protein precursor K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D CJA_0549 conserved hypothetical protein K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97] D CJA_0561 pda4B; polysaccharide deacetylase protein, putative, pda4B K16842 hpxB; allantoinase [EC:3.5.2.5] D CJA_0579 amaB; N-carbamoyl-L-amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D CJA_0577 pucG; purine catabolism protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] D CJA_0575 gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] C 00240 Pyrimidine metabolism [PATH:cja00240] D CJA_2686 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CJA_2687 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CJA_2419 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CJA_2589 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D CJA_2158 pyrD; dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D CJA_3528 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CJA_2119 Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CJA_3170 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CJA_1114 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CJA_1477 ndk; nucleotide diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CJA_2574 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CJA_2814 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D CJA_2227 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CJA_2118 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D CJA_1946 ushA; 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D CJA_1969 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CJA_1346 decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D CJA_0327 cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CJA_1625 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D CJA_1569 nrdA; ribonucleoside reductase, large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CJA_1568 nrdB; ribonucleoside reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CJA_1993 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D CJA_0468 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:cja00250] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2214 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CJA_1947 carbon-nitrogen hydrolase family protein K13566 NIT2; omega-amidase [EC:3.5.1.3] D CJA_2373 aminotransferase, classes I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CJA_2073 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D CJA_2635 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CJA_0251 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CJA_3073 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CJA_2492 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CJA_2419 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CJA_2087 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CJA_3147 glutamate synthase large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CJA_3146 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CJA_2161 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D CJA_2152 gdhA; Glu/Leu/Phe/Val dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_2686 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CJA_2687 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CJA_3802 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CJA_1757 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:cja00260] D CJA_1360 lysC; aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CJA_1747 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CJA_1439 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CJA_2041 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] D CJA_1440 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D CJA_2703 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CJA_3553 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CJA_0232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1071 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CJA_2960 ACT domain protein/phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D CJA_1061 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CJA_0421 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CJA_0669 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CJA_0239 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CJA_0345 dsd; D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D CJA_1752 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D CJA_1751 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D CJA_1875 diaminobutyrate-2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D CJA_3237 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D CJA_3238 L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178] D CJA_3236 ectC; Ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108] C 00270 Cysteine and methionine metabolism [PATH:cja00270] D CJA_0364 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_0522 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_2237 srpH; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_2768 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CJA_1896 patB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CJA_2542 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CJA_2448 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D CJA_0207 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CJA_2726 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] D CJA_3790 putative methylthioadenosine/S-adenosyl homocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CJA_3204 YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CJA_2127 hydrolase, Atz/Trz family K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D CJA_0206 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CJA_2178 conserved hypothetical protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D CJA_1360 lysC; aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CJA_1747 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CJA_1439 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CJA_0119 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D CJA_1758 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D CJA_0501 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CJA_0164 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CJA_0081 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2345 Rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_3119 rhdA; rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_1940 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_1983 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CJA_2577 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D CJA_0232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1071 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:cja00280] D CJA_0501 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CJA_2967 hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cja00290] D CJA_0239 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CJA_1744 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D CJA_1745 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D CJA_1746 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D CJA_0664 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0759 putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0665 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CJA_0668 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D CJA_0477 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CJA_0501 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CJA_2280 avtA; valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D CJA_2373 aminotransferase, classes I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CJA_0024 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:cja00300] D CJA_1439 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CJA_1360 lysC; aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CJA_1747 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CJA_2830 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CJA_2688 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CJA_1100 dapD; tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D CJA_2877 argD acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CJA_1103 aminotransferase, class I K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D CJA_1091 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CJA_3290 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CJA_3291 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CJA_2934 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CJA_2933 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:cja00310] D CJA_1506 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_2087 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CJA_2599 putative oxidoreductase, FAD-binding K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] C 00220 Arginine biosynthesis [PATH:cja00220] D CJA_2878 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D CJA_2635 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CJA_0251 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CJA_1243 urea amidolyase K01941 uca; urea carboxylase [EC:6.3.4.6] D CJA_2723 urea amidolyase homolog K01941 uca; urea carboxylase [EC:6.3.4.6] D CJA_1244 urea amidolyase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_2686 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CJA_2687 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CJA_2161 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D CJA_2152 gdhA; Glu/Leu/Phe/Val dehydrogenase family protein K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2373 aminotransferase, classes I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CJA_0479 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D CJA_2918 argJ; arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D CJA_3525 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D CJA_0885 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D CJA_2877 argD acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CJA_0480 argE; acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:cja00330] D CJA_0327 cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CJA_3641 probable orn/arg/lys decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D CJA_1511 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D CJA_1656 glycosyl hydrolase, family 10 K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D CJA_2726 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] D CJA_1513 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D CJA_0574 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CJA_3752 FAD binding domain protein K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D CJA_0089 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D CJA_0461 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CJA_0785 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D CJA_3656 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:cja00340] D CJA_2795 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D CJA_3074 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D CJA_0744 phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D CJA_0745 hisIE; bifunctional protein phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D CJA_0158 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D CJA_0157 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D CJA_0159 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D CJA_0156 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CJA_2794 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:cja00350] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CJA_1958 Potential flavoprotein oxygenase, DIM6/NTAB family K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D CJA_2087 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CJA_3622 fumarylacetoacetate hydrolase family protein K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:cja00360] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CJA_0025 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D CJA_2891 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D CJA_0574 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:cja00380] D CJA_1506 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_0574 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CJA_0025 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D CJA_2891 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cja00400] D CJA_1740 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CJA_0418 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CJA_2739 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D CJA_3588 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D CJA_0417 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D CJA_2549 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D CJA_0627 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D CJA_1949 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D CJA_2663 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CJA_2662 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D CJA_2661 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D CJA_1750 trpF; N-(5'phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D CJA_2660 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D CJA_1752 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D CJA_1751 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D CJA_2124 pheA; chorismate mutase/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CJA_0104 fkbO; FkbO protein K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:cja00410] D CJA_2974 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CJA_2975 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism [PATH:cja00430] D CJA_2073 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D CJA_2161 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:cja00450] D CJA_1896 patB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CJA_2542 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CJA_2448 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D CJA_1470 selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D CJA_2234 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D CJA_2561 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CJA_2121 cysNC; sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CJA_2122 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CJA_1009 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:cja00460] D CJA_1140 cel3D; putative 1,4-beta-D-glucan glucohydrolase cel3D K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0223 cel3C; glucan 1,4-beta-glucosidase, putative, cel3C K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0204 cel3A; glucan 1,4-beta-glucosidase cel3A K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_1497 cel3B; glucan 1,4-beta-glucosidase, putative, cel3B K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_2703 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CJA_0963 fmdA; amidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:cja00470] D CJA_0676 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CJA_2927 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CJA_2190 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CJA_2931 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CJA_0345 dsd; D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D CJA_3290 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CJA_3291 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:cja00480] D CJA_0164 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CJA_0081 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D CJA_1448 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CJA_2170 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CJA_0484 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CJA_0605 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CJA_2571 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CJA_3099 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D CJA_1350 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CJA_3264 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D CJA_0943 putative glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D CJA_2726 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis [PATH:cja00515] D CJA_3156 gt39A; glycosyl transferase, putative, gt39A K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00514 Other types of O-glycan biosynthesis [PATH:cja00514] D CJA_3156 gt39A; glycosyl transferase, putative, gt39A K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:cja00511] D CJA_0496 bgl2A; beta-galactosidase, putative, bgl2A K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_2610 bgl2C; beta-galactosidase, putative, bgl2C K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0532 bgl2B; beta-galactosidase, putative, bgl2B K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CJA_0350 hex20A; N-acetyl-beta-hexosaminidase, putative, hex20A K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_0287 hex20B; beta-hexaminidase, putative, hex20B K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_3593 afc95B; alpha-L-fucosidase, putative, afc95B K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] D CJA_2710 afc95A; alpha-L-fucosidase, putative, afc95A K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] D CJA_3306 gly30A; glycoside hydrolase family 30, gly30A K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00540 Lipopolysaccharide biosynthesis [PATH:cja00540] D CJA_1124 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CJA_2921 lpx11A; UDP-3-0-acyl N-acetylglucosamine deacetylase, putative, lpx11A K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CJA_1122 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CJA_1995 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CJA_1125 lpx19A; lipid-A-disaccharide synthase, putative, lpx19A K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CJA_1781 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CJA_2800 sugar isomerase, KpsF/GutQ family subfamily K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CJA_2226 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CJA_2801 phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CJA_1782 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CJA_2916 kdt30A; KDO transferase, putative, kdt30A K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CJA_0060 uvs111; Uvs111 K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_1415 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_2840 htrB; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_0951 lpxO; beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D CJA_0946 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CJA_0925 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CJA_0509 rfaE; LPS biosynthesis protein RfaE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D CJA_0055 uvs117; Uvs117 K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D CJA_1369 gt9B; lipopolysaccharide heptosyltransferase, putative, gt9B K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D CJA_0502 gt9A; glycosyl transferase, putative, gt9A K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CJA_0503 waaP; lipopolysaccharide core biosynthesis protein WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D CJA_0504 gt4E; glycosyl transferase, putative, gt4E K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cja00541] D CJA_2116 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CJA_0777 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CJA_3434 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CJA_3427 NAD dependent epimerase/dehydratase family superfamily K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D CJA_3436 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CJA_3435 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CJA_3438 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CJA_3437 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CJA_0748 dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CJA_2115 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D CJA_2117 putative phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D CJA_3806 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CJA_3455 WbgZ K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] D CJA_3426 polysaccharide biosynthesis protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] C 00550 Peptidoglycan biosynthesis [PATH:cja00550] D CJA_2796 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CJA_1784 murB; UDP-N-acetylpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CJA_2928 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CJA_2931 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CJA_2934 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CJA_2927 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CJA_2933 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CJA_1116 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CJA_0397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_2207 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_2932 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CJA_2929 mur28A; mur beta-N-acetylglucosaminyltransferase, putative, mur28A K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CJA_1025 gt51A; murein polymerase, putative, gt51A K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CJA_0411 gt51D; murein polymerase, putative, gt51D K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CJA_0659 gt51C; murein polymerase, putative, gt51C K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CJA_3382 gt51B; murein polymerase, putative, gt51B K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CJA_0789 mrdA-2; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CJA_2935 ftsI; penicillin-binding protein 3 - Pseudomonas aeruginosa K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CJA_0793 D-alanyl-D-alanine carboxypeptidase family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:cja00552] D CJA_0397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_2207 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_3455 WbgZ K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:cja00543] D CJA_0610 cpsA; capsular polysaccharide biosynthesis protein K03606 wcaJ; undecaprenyl-phosphate glucose phosphotransferase [EC:2.7.8.31] D CJA_0364 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_0522 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_2237 srpH; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CJA_0620 gt4J-2; glycosyl transferase, putative, gt4J K13657 gumH; alpha-1,3-mannosyltransferase [EC:2.4.1.252] D CJA_0618 gt70A; UDP-GlcA beta-glucuronosyltransferase, putative, gt70A K13659 gumK; 2-beta-glucuronyltransferase [EC:2.4.1.264] D CJA_0617 gt26A; glycosyl transferase, putative, gt26A K13660 gumM; beta-1,4-glucosyltransferase [EC:2.4.1.-] D CJA_0616 gt4J-1; glycosyl transferase, putative, gt4J K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:cja00730] D CJA_2909 thiC; thiamin biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D CJA_2910 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CJA_1466 cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CJA_3531 thiI; thiazole biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CJA_2106 thiO; glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D CJA_3336 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CJA_2108 thiG; Thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10] D CJA_0881 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CJA_2692 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D CJA_3118 GTPase, YjeQ family K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CJA_1403 alkaline phosphatase III K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CJA_2084 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:cja00740] D CJA_2689 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CJA_2695 ribB_A; bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CJA_2698 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CJA_2694 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D CJA_2696 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D CJA_3218 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D CJA_1958 Potential flavoprotein oxygenase, DIM6/NTAB family K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D CJA_2344 msuE; FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D CJA_2908 conserved hypothetical protein TIGR00052 K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CJA_2150 hydrolase, NUDIX family domain protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CJA_2966 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:cja00750] D CJA_1341 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D CJA_2376 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D CJA_1071 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CJA_0860 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D CJA_1791 pdxJ; Pyridoxal phosphate biosynthesis protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D CJA_1440 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:cja00760] D CJA_2214 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CJA_2831 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D CJA_2725 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D CJA_1946 ushA; 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D CJA_0786 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D CJA_2574 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CJA_2046 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D CJA_3207 adgA; glutamine-dependent NAD+ synthetase signal peptide protein K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D CJA_2231 competence/damage-inducible protein CinA C-terminal domain subfamily K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D CJA_2174 Predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D CJA_1772 soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D CJA_0175 proton-translocating nicotinamide nucleotide transhydrogenase subunit PntAA K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D CJA_0176 pntA; NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D CJA_0177 proton-translocating nicotinamide nucleotide transhydrogenase subunit PntB K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D CJA_2087 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:cja00770] D CJA_0664 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0759 putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CJA_0665 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CJA_0668 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D CJA_0477 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CJA_0385 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D CJA_2975 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CJA_0678 transcriptional activator, putative, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D CJA_3523 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D CJA_2574 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CJA_3503 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D CJA_2733 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D CJA_0752 mtaA; HetI K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D CJA_0501 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CJA_2974 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:cja00780] D CJA_0428 bioC; biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D CJA_0097 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_0749 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_1678 Beta-ketoacyl synthase, N-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0117 fabF-2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0116 putative 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_1676 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_2303 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_1123 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CJA_0427 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D CJA_2079 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D CJA_0429 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D CJA_0426 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D CJA_0677 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:cja00785] D CJA_0796 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D CJA_0797 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_1336 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CJA_1337 gt4H; glycosyl transferase, putative, gt4H K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CJA_1505 sucA; 2-oxoglutarate dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CJA_1506 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CJA_1061 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CJA_0421 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CJA_0420 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:cja00790] D CJA_1951 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D CJA_1403 alkaline phosphatase III K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CJA_0769 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D CJA_0387 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D CJA_0770 folK-2; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D CJA_2673 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D CJA_0469 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CJA_1754 folC; folylpolyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D CJA_2689 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CJA_2695 ribB_A; bifunctional protein 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CJA_2038 pabB; para-aminobenzoate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D CJA_1679 pabC; 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D CJA_2278 4a-hydroxytetrahydrobiopterin dehydratase (PCD) K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D CJA_0772 oxidoreductase, short chain dehydrogenase/reductase family K03793 PTR1; pteridine reductase [EC:1.5.1.33] D CJA_2836 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CJA_2835 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CJA_1554 GTP cyclohydrolase I family protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CJA_0321 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CJA_1491 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CJA_1493 molybdenum cofactor biosynthesis protein E K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D CJA_0320 moaB1; molybdopterin biosynthetic protein B1 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D CJA_0762 Molybdopterin biosynthesis enzyme K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CJA_1340 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:cja00670] D CJA_0469 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CJA_1964 folD; bifunctional protein 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CJA_2703 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CJA_1629 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CJA_2747 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CJA_3581 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CJA_0421 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CJA_2542 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CJA_0468 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CJA_1602 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D CJA_0205 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D CJA_0289 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:cja00860] D CJA_1379 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CJA_0651 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D CJA_0880 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CJA_1906 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CJA_3386 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D CJA_3385 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D CJA_3144 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D CJA_3587 hemF; coproporphyrinogen III oxidase, aerobic K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D CJA_0984 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D CJA_0882 Uncharacterised protein family (UPF0093) superfamily K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D CJA_3661 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D CJA_3384 putative uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D CJA_2551 siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D CJA_0323 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D CJA_0873 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CJA_0872 uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D CJA_3774 cobO; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CJA_3773 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D CJA_3769 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D CJA_3768 cobC; cobalamin biosynthetic protein K02225 cobC1; cobalamin biosynthesis protein CobC D CJA_3770 cobP; cobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D CJA_2897 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D CJA_2896 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D CJA_2898 fructose-2;6-bisphosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D CJA_2682 Heme oxygenase K07215 pigA; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D CJA_1065 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cja00130] D CJA_0152 ubiC; chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D CJA_0104 fkbO; FkbO protein K18240 xanB2; chorismate lyase / 3-hydroxybenzoate synthase [EC:4.1.3.40 4.1.3.45] D CJA_0151 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D CJA_0362 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D CJA_2966 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D CJA_0295 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D CJA_2128 ubiG; ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D CJA_0102 ubiquinone/menaquinone biosynthesis methlytransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D CJA_3643 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D CJA_2656 conserved hypothetical protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D CJA_2284 trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D CJA_0535 conserved hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:cja00900] D CJA_3336 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CJA_1118 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D CJA_2223 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D CJA_0646 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D CJA_2222 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D CJA_1481 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D CJA_3214 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D CJA_2966 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D CJA_3335 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CJA_0751 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CJA_1116 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:cja00907] D CJA_2967 hydroxymethylglutaryl-CoA lyase, (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase) K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CJA_0210 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products D CJA_2999 halA; halogenase A K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00253 Tetracycline biosynthesis D CJA_2999 halA; halogenase A K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00523 Polyketide sugar unit biosynthesis [PATH:cja00523] D CJA_3436 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CJA_3435 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CJA_3438 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CJA_3437 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CJA_0748 dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D CJA_3435 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:cja00946] D CJA_1140 cel3D; putative 1,4-beta-D-glucan glucohydrolase cel3D K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0223 cel3C; glucan 1,4-beta-glucosidase, putative, cel3C K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0204 cel3A; glucan 1,4-beta-glucosidase cel3A K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_1497 cel3B; glucan 1,4-beta-glucosidase, putative, cel3B K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D CJA_3110 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:cja00332] D CJA_0461 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CJA_0785 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:cja00261] D CJA_1874 MbtH-like protein-related protein K05375 mbtH; MbtH protein D CJA_2121 cysNC; sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CJA_2122 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CJA_1360 lysC; aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CJA_1747 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CJA_2830 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CJA_2688 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:cja00521] D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CJA_1887 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CJA_3524 algC; phosphomannomutase AlgC K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D CJA_1463 suhB; extragenic suppressor protein SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CJA_3436 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CJA_3435 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CJA_3438 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CJA_3437 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CJA_0748 dTDP-4-rhamnose reductase-related protein K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D CJA_1496 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:cja00525] D CJA_3250 3-dehydroquinate synthase K19969 acbC; 2-epi-5-epi-valiolone synthase [EC:4.2.3.152] D CJA_3256 hypothetical protein K20426 acbU; 1-epi-valienol-7-phosphate kinase [EC:2.7.-.-] D CJA_3254 glgC; Glucose-1-phosphate adenylyltransferase K20427 acbR; valienol-1-phosphate guanylyltransferase [EC:2.7.7.91] D CJA_3436 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CJA_3435 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CJA_3257 homolog of 4-aminobutyrate aminotransferase GabT K20428 acbV; dTDP-4-amino-4,6-dideoxy-D-glucose transaminase [EC:2.6.1.33] D CJA_3255 gt5B; glycosyl transferase, putative, gt5B K20430 acbS; glycosyltransferase AcbS [EC:2.4.-.-] D CJA_3262 kinase, pfkB family K19978 acbK; acarbose 7IV-phosphotransferase [EC:2.7.1.187] D CJA_3253 putative glucokinase K20433 valC; C7-cyclitol 7-kinase [EC:2.7.1.214] C 00401 Novobiocin biosynthesis [PATH:cja00401] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis [PATH:cja00404] D CJA_1070 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_2881 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_3150 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_1159 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_3630 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_0218 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_2713 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_0354 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_3467 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_1049 rebH; tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] D CJA_2999 halA; halogenase A K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] C 00405 Phenazine biosynthesis D CJA_2663 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CJA_2662 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D CJA_1675 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CJA_0116 putative 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_1676 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_2303 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CJA_1677 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CJA_0101 acpC; acyl carrier protein K02078 acpP; acyl carrier protein D CJA_0108 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:cja00999] D CJA_0207 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CJA_3588 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D CJA_1140 cel3D; putative 1,4-beta-D-glucan glucohydrolase cel3D K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0223 cel3C; glucan 1,4-beta-glucosidase, putative, cel3C K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_0204 cel3A; glucan 1,4-beta-glucosidase cel3A K05349 bglX; beta-glucosidase [EC:3.2.1.21] D CJA_1497 cel3B; glucan 1,4-beta-glucosidase, putative, cel3B K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites D CJA_1863 vbsA; N6-hydroxylysine acetyl transferase K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:cja00362] D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CJA_1528 nahO; acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D CJA_2758 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation [PATH:cja00627] D CJA_0574 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CJA_2966 3-polyprenyl-4-hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:cja00364] D CJA_2039 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D CJA_1059 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:cja00625] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:cja00361] D CJA_2039 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D CJA_1059 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:cja00623] D CJA_1090 FAD binding domain protein K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1] D CJA_2039 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D CJA_1059 putative hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:cja00622] D CJA_1528 nahO; acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation D CJA_1693 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:cja00643] D CJA_0574 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation [PATH:cja00791] D CJA_1244 urea amidolyase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D CJA_1243 urea amidolyase K01941 uca; urea carboxylase [EC:6.3.4.6] D CJA_2723 urea amidolyase homolog K01941 uca; urea carboxylase [EC:6.3.4.6] C 00930 Caprolactam degradation D CJA_2000 gnl; gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_0344 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] C 00363 Bisphenol degradation C 00621 Dioxin degradation D CJA_1528 nahO; acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00626 Naphthalene degradation [PATH:cja00626] D CJA_3340 adhC; alcohol dehydrogenase C K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation D CJA_0537 choB; cholesterol oxidase K03333 choD; cholesterol oxidase [EC:1.1.3.6] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:cja03020] D CJA_0692 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CJA_0693 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CJA_0724 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CJA_3570 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:cja03010] D CJA_2114 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CJA_1110 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CJA_0705 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CJA_0723 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CJA_0716 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CJA_2982 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CJA_0695 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CJA_0713 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CJA_2786 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CJA_0698 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CJA_0722 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CJA_0694 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CJA_0721 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D CJA_0712 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14 D CJA_0439 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CJA_1433 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CJA_0708 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CJA_2981 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CJA_0703 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CJA_0852 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CJA_0767 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CJA_0689 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CJA_0702 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CJA_0699 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CJA_0700 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D CJA_0711 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CJA_0714 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CJA_0691 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CJA_2980 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CJA_0690 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CJA_0688 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CJA_2787 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CJA_0709 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CJA_0718 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CJA_0706 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CJA_0725 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CJA_0715 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CJA_1436 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CJA_2527 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CJA_0458 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CJA_0704 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CJA_0701 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CJA_0710 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CJA_0643 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D CJA_0459 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CJA_3515 ribosomal protein L28-related protein K02902 RP-L28; large subunit ribosomal protein L28 D CJA_0707 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CJA_0717 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CJA_0409 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CJA_1673 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CJA_3514 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CJA_3826 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CJA_2528 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CJA_0720 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CJA_3859 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3881 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3888 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3863 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3885 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3891 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3864 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3886 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3892 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:cja00970] D CJA_3862 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3890 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3884 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3903 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3933 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_4146 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3918 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3937 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CJA_3932 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CJA_3944 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CJA_3923 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CJA_3857 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CJA_3913 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CJA_3915 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CJA_3867 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3914 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3916 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3936 tRNA-His K14226 tRNA-His; tRNA His D CJA_3861 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3889 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3883 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3912 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_3938 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4133 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_3924 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4119 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4122 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CJA_4123 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CJA_3854 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3872 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3844 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3849 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CJA_3894 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_3934 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_4117 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_3902 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3919 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3917 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3865 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CJA_3868 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CJA_3870 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CJA_3866 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CJA_3922 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_3931 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_3945 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_1379 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CJA_2819 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CJA_2820 gatB; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CJA_2818 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CJA_1681 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CJA_1359 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CJA_1027 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CJA_0057 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CJA_0056 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CJA_2530 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CJA_2552 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CJA_1682 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CJA_1009 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CJA_3581 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CJA_1363 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CJA_0454 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CJA_3217 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CJA_2478 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CJA_2411 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CJA_2467 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CJA_1482 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CJA_2526 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CJA_2525 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CJA_0891 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CJA_2080 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:cja03060] D CJA_0719 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CJA_0686 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CJA_2670 putative preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG D CJA_1458 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CJA_1459 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CJA_1660 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CJA_3823 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D CJA_2919 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CJA_3557 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D CJA_1685 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CJA_3500 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D CJA_0485 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0743 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0489 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0742 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0488 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CJA_0741 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CJA_2583 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CJA_3216 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:cja04122] D CJA_1466 cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CJA_2345 Rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_3119 rhdA; rhodanese K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_1940 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CJA_2379 SirA protein homolog K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CJA_1333 Uncharacterized protein family UPF0033 family K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CJA_1662 dsrH; DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D CJA_1663 DsrE/DsrF-like family K07236 tusC; tRNA 2-thiouridine synthesizing protein C D CJA_1664 dsrE; dsrE protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D CJA_1661 DsrC K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D CJA_2490 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CJA_1493 molybdenum cofactor biosynthesis protein E K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D CJA_0321 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CJA_1492 moaDE; molybdenum cofactor biosynthesis protein D/E K03636 moaD; sulfur-carrier protein D CJA_0654 moeB; molybdopterin biosynthesis MoeB protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D CJA_1491 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CJA_0320 moaB1; molybdopterin biosynthetic protein B1 K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D CJA_3531 thiI; thiazole biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CJA_2107 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:cja03018] D CJA_0465 hydrolase, NUDIX family K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D CJA_1667 ribonuclease, Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CJA_0969 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CJA_0440 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CJA_1706 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CJA_1641 ATP-dependent RNA helicase, DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CJA_2995 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CJA_1979 deaD-1; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CJA_0125 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CJA_0361 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CJA_3347 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CJA_2646 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CJA_3079 hfq; Hfq protein K03666 hfq; host factor-I protein D CJA_3560 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CJA_1575 polyphosphate kinase family protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D CJA_0388 pcnB; polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:cja03030] D CJA_2048 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CJA_1127 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CJA_2441 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CJA_1989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CJA_0452 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CJA_1447 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CJA_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CJA_2978 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CJA_0765 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_2049 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CJA_1126 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:cja03410] D CJA_1102 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CJA_1068 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CJA_0530 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CJA_0666 possible DNA-3-methyladenine glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CJA_3505 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CJA_3658 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CJA_1734 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CJA_3529 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_1614 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:cja03420] D CJA_1764 mfd; transcription-repair coupling protein Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CJA_0726 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CJA_2425 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CJA_1786 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CJA_3566 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_3729 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:cja03430] D CJA_2356 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CJA_3081 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CJA_3566 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_3729 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_2637 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D CJA_2105 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CJA_3334 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CJA_1614 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_1127 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CJA_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CJA_2441 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CJA_0452 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CJA_1989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CJA_2048 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CJA_1447 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:cja03440] D CJA_1614 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_0003 recF; RecF protein K03629 recF; DNA replication and repair protein RecF D CJA_2578 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CJA_2439 recR; recombination protein RecR K06187 recR; recombination protein RecR D CJA_2230 recA; recA protein K03553 recA; recombination protein RecA D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_1030 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CJA_1031 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CJA_1029 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CJA_3491 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_3639 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_1578 putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_1127 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CJA_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CJA_2441 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CJA_0452 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CJA_1989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CJA_2048 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CJA_1447 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CJA_0407 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:cja03250] D CJA_1792 peptidyl-prolyl cis-trans isomerase A (PPIaseA) (Rotamase A) (Cyclophilin A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_2020 peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus D CJA_1334 putative peptidase, insulinase family K01408 IDE; insulysin [EC:3.4.24.56] C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:cja02010] D CJA_2349 cysP; thiosulfate ABC transporter, periplasmic thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CJA_2243 sulfate ABC transporter, periplasmic binding protein component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CJA_2348 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2242 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2347 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2241 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2240 cysA-2; sulfate/thiosulfate import ATP-binding protein cysA 2 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CJA_0009 nrtA; ABC transporter nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0529 nitrate-binding protein nrtA precursor, periplasmic K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0010 possible nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0528 nitrate ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0939 nitrate transporter system, ATPase component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_0011 nrtC; ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_2324 putative ABC transporter, substrate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2256 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2323 AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2321 atsB; AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2257 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D CJA_2343 AtsC K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_2258 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_0316 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CJA_0317 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CJA_0318 modC; ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CJA_1574 ABC transporter substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_1591 ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_3620 putative Bacterial extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_1590 afuB_2; ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein D CJA_3619 Binding-protein-dependent transport systems inner membrane component domain protein K02011 afuB; iron(III) transport system permease protein D CJA_3618 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CJA_1592 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CJA_3468 Bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D CJA_2798 Toluene tolerance, Ttg2 superfamily K07323 mlaC; phospholipid transport system substrate-binding protein D CJA_1608 conserved domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CJA_1610 ABC-type transport system, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CJA_1609 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CJA_0542 bmp family protein K07335 bmpA; basic membrane protein A and related proteins D CJA_0544 permease protein of sugar ABC transporter K23535 nupB; general nucleoside transport system permease protein D CJA_0543 ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CJA_0545 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CJA_3019 ABC transporter periplasmic binding protein K23508 ytfQ; galactofuranose transport system substrate-binding protein D CJA_3022 putative ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D CJA_3021 sugar ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D CJA_3020 sugar ABC transporter ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D CJA_2782 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_1142 OmpA family protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_2781 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein D CJA_2780 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein D CJA_2779 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CJA_0956 amide-urea binding protein K11959 urtA; urea transport system substrate-binding protein D CJA_1241 ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D CJA_1240 Branched-chain amino acid transport system / permease component domain protein K11960 urtB; urea transport system permease protein D CJA_0957 amino acid/sugar ABC transporter, permease protein K11960 urtB; urea transport system permease protein D CJA_0958 fmdF; ABC transporter permease protein K11961 urtC; urea transport system permease protein D CJA_1239 possible permease of ABC transporter K11961 urtC; urea transport system permease protein D CJA_1238 branched-chain amino acid ABC transporter, ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D CJA_0959 ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D CJA_1237 putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind) K11963 urtE; urea transport system ATP-binding protein D CJA_0960 ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D CJA_2057 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2058 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2056 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CJA_2055 oppC; oligopeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CJA_2054 peptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CJA_2249 Bacterial extracellular solute-binding protein, family 5 domain protein K13893 yejA; microcin C transport system substrate-binding protein D CJA_2291 Bacterial extracellular solute-binding protein, family 5 domain protein K13893 yejA; microcin C transport system substrate-binding protein D CJA_2252 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein D CJA_2290 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein D CJA_2251 Binding-protein-dependent transport systems inner membrane component domain protein K13895 yejE; microcin C transport system permease protein D CJA_2250 ABC transporter domain protein K13896 yejF; microcin C transport system ATP-binding protein D CJA_3480 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein D CJA_3484 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D CJA_3483 znuC; zinc ABC transporter, ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CJA_3439 wzm; Wzm K09690 wzm; homopolymeric O-antigen transport system permease protein D CJA_3440 wzt; Wzt K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D CJA_0604 ABC-2 type transporter K09696 natB; sodium transport system permease protein D CJA_0603 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CJA_1775 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D CJA_1777 lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D CJA_1776 insulin-like growth factor I K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CJA_2066 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D CJA_2067 heme exporter protein C K02195 ccmC; heme exporter protein C D CJA_2068 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D CJA_2069 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D CJA_1449 putative permease, YjgP/YjgQ family superfamily K07091 lptF; lipopolysaccharide export system permease protein D CJA_1450 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein D CJA_2804 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CJA_3498 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CJA_3499 ftsE; cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CJA_0508 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CJA_2314 ABC-transport protein, ATP-binding component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_2313 ABC-transport protein, ATP-binding component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_1516 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0274 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0262 ABC transporter, ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_3604 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0141 ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D CJA_1523 ABC-type multidrug efflux pump K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_1393 toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D CJA_2533 macrolide ABC efflux protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CJA_1867 pvdE; pyoverdine ABC transporter, permease/ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:cja02060] D CJA_0466 phosphoenolpyruvate-protein phosphotransferase PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D CJA_2810 pstH; Phosphocarrier protein HPr (Histidine-containing protein) K08485 ptsO; phosphocarrier protein NPr D CJA_2808 ptsN; phosphotransferase enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:cja03070] D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_3332 gspD; General secretion pathway protein D K02453 gspD; general secretion pathway protein D D CJA_3333 gspC; General secretion pathway protein C K02452 gspC; general secretion pathway protein C D CJA_3330 gspF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F D CJA_3329 gspG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G D CJA_3328 gspH; General secretion pathway protein H K02457 gspH; general secretion pathway protein H D CJA_3327 gspI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I D CJA_3326 gspJ; General secretion pathway protein J K02459 gspJ; general secretion pathway protein J D CJA_3325 gspK; General secretion pathway protein K K02460 gspK; general secretion pathway protein K D CJA_3324 gspL; General secretion pathway protein L K02461 gspL; general secretion pathway protein L D CJA_3323 gspM; General secretion pathway protein M K02462 gspM; general secretion pathway protein M D CJA_0483 type IV pilus biogenesis protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CJA_3331 gspE; General secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CJA_1458 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CJA_1459 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CJA_0686 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CJA_2670 putative preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG D CJA_0719 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CJA_1660 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CJA_3823 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D CJA_2919 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CJA_3500 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D CJA_3557 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D CJA_1685 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CJA_0485 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0743 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0489 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0742 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0488 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CJA_0741 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CJA_1233 TraG/TraD family K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D CJA_1645 ppkA; serine/threonine protein kinase PpkA K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] B B 09132 Signal transduction C 02020 Two-component system [PATH:cja02020] D CJA_0149 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CJA_0150 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CJA_1403 alkaline phosphatase III K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CJA_2782 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_1142 OmpA family protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_0781 phoQ; Sensory transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CJA_0782 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D CJA_1802 abfS; abfS arabinofuranosidase two component system sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CJA_1803 abfR; abfR arabinofuranosidase two component system response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CJA_0037 rstA; response regulator (activator) in two-component regulatory system with RstB (OmpR family) K07661 rstA; two-component system, OmpR family, response regulator RstA D CJA_2585 mucD; MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_0424 trypsin domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_1407 creC; two-component sensor CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CJA_1406 two-component response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D CJA_2845 baeS; Sensory transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CJA_2846 baeR; DNA-binding response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D CJA_0373 HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D CJA_2319 HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D CJA_0372 RND transporter, Hydrophobe/Amphiphile Efflux family K07788 mdtB; multidrug efflux pump D CJA_0371 RND efflux transporter, permease protein K07789 mdtC; multidrug efflux pump D CJA_1830 heavy metal RND efflux membrane fusion protein, CzcB family K07798 cusB; membrane fusion protein, copper/silver efflux system D CJA_1831 heavy metal RND efflux transporter, CzcA family K07787 cusA; copper/silver efflux system protein D CJA_1917 flaA; flagellin K02406 fliC; flagellin D CJA_1919 flagellin K02406 fliC; flagellin D CJA_2141 FliA K02405 fliA; RNA polymerase sigma factor FliA D CJA_2136 transporter, MotA/TolQ/ExbB proton channel family K02556 motA; chemotaxis protein MotA D CJA_1170 motA1; chemotaxis motA protein K02556 motA; chemotaxis protein MotA D CJA_1856 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CJA_1855 kdpE; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CJA_0872 uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D CJA_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CJA_1688 sfcA1; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CJA_0250 algZ; AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D CJA_0249 algR; alginate biosynthesis regulatory protein AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D CJA_0603 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CJA_0604 ABC-2 type transporter K09696 natB; sodium transport system permease protein D CJA_3177 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CJA_2579 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CJA_1785 gacA; GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D CJA_1361 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CJA_3564 bla; beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D CJA_1088 two-component system sensor protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D CJA_1087 DNA-binding response regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D CJA_1284 Spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1285 putative type 1 pili pilus subunit K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1288 putative type 1 pili tip component K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1286 fimC; type 1 pilus chaperone FimC K07346 fimC; fimbrial chaperone protein D CJA_1287 fimD; type 1 pili usher protein FimD K07347 fimD; outer membrane usher protein D CJA_1104 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D CJA_1844 Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D CJA_3536 conserved hypothetical protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CJA_3537 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_0389 galR two-component system response regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CJA_3060 mopR; MopR K07714 atoC; two-component system, NtrC family, response regulator AtoC D CJA_2032 putative regulatory lipoprotein K08478 pgtC; phosphoglycerate transport regulatory protein PgtC D CJA_3208 pilS; sensor kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CJA_3209 pilR; PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D CJA_2806 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CJA_2728 pilA; Fimbrial protein precursor (Pilin) K02650 pilA; type IV pilus assembly protein PilA D CJA_2729 pilin K02650 pilA; type IV pilus assembly protein PilA D CJA_1892 P(-)rp(+) fimbrial protein K02650 pilA; type IV pilus assembly protein PilA D CJA_1933 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_2942 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_1188 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_0801 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_0182 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1187 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1382 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2086 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2636 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2948 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3469 product exhibits features of a methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3538 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2078 aer-2; aerotaxis receptor Aer-2 K03776 aer; aerotaxis receptor D CJA_2944 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2132 CheW K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2133 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2945 cheA-1; chemotaxis sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2138 cheA; histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2947 cheY-1; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2140 CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_1901 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2281 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2137 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_2940 cheB-1; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_1934 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CJA_0075 pilK; type IV pili chemotactic methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D CJA_0076 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D CJA_0077 pilI; Protein pilI K02659 pilI; twitching motility protein PilI D CJA_0074 pilL; type IV pili sensor histidine kinase/response regulator PilL K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D CJA_0080 pilG; twitching motility protein PilG - Pseudomonas aeruginosa K02657 pilG; twitching motility two-component system response regulator PilG D CJA_0078 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D CJA_0073 cheB; protein-glutamate methylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D CJA_0072 conserved hypothetical protein K06598 chpC; chemosensory pili system protein ChpC D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D CJA_1708 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D CJA_1709 fleR; transcriptional activator K10943 flrC; two-component system, response regulator FlrC D CJA_2659 cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_3521 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0518 cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0914 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0908 sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D CJA_0907 DNA-binding response regulator K15012 regA; two-component system, response regulator RegA D CJA_2785 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D CJA_2784 petB; ubiquinol--cytochrome c reductase, cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D CJA_2657 cbp32B; carbohydrate binding protein, putative, cbp32B K08738 CYC; cytochrome c D CJA_2634 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D CJA_2633 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D CJA_2632 cytochrome c oxidase subunit-related protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D CJA_2631 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D CJA_3226 qxtA; quinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CJA_3227 cytochrome oxidase subunit II superfamily K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CJA_1375 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_0624 epsE; EpsE K01991 wza; polysaccharide biosynthesis/export protein D CJA_3424 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein D CJA_1783 protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D CJA_0181 pme8C; pectin methylesterase, putative, pme8C K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D CJA_1633 cel9B; endo-1,4-beta glucanase, putative, cel9B K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2983 cel5B; endo-1,4-beta glucanase, cel5B K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3337 cel5E; cellulase, putative, cel5E K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_0619 cel5H; endo-1,4-beta glucanase, putative, cel5H K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2472 cel9A; endo-1,4-beta glucanase, cel9A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3010 cel5D; cellulase, putative, cel5D K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_1462 cel5A; endo-1,4-beta glucanase, cel5A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3369 cel5C; cellulase, putative, cel5C K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3305 glu5A; glucan exo-1,3-beta glucosidase, putative, glu5A K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_3804 cel9C; cellulase, putative, cel9C K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2959 cel5F; cellulase, putative, cel5F K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2760 cel5G; cellulase, putative, cel5G K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] D CJA_2473 cel6A; cellobiohydrolase, putative, cel6A K19668 CBH2; cellulose 1,4-beta-cellobiosidase [EC:3.2.1.91] D CJA_2297 fecI; Probable fecI Specialized sigma subunits of RNA K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D CJA_2293 fecR; transmembrane sensor K07165 fecR; transmembrane sensor D CJA_2680 sigma factor regulatory protein, FecR/PupR family K07165 fecR; transmembrane sensor D CJA_1861 probable transmembrane sensor K07165 fecR; transmembrane sensor D CJA_2296 transmembrane sensor K07165 fecR; transmembrane sensor D CJA_1720 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D CJA_1719 response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D CJA_2640 putative response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D CJA_1718 conserved hypothetical protein K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D CJA_2641 putative SpoIIAA family protein K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor D CJA_1936 putative negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D CJA_2785 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:cja02024] D CJA_3079 hfq; Hfq protein K03666 hfq; host factor-I protein D CJA_2663 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CJA_2662 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D CJA_0272 gt1B; rhamnosyltransferase, putative, gt1B K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D CJA_3197 gt1C; glycosyl transferase, putative, gt1C K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D CJA_3451 gt2D; glycosyl transferase, putative, gt2D K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D CJA_1740 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CJA_1855 kdpE; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CJA_1277 pelC; pectate lyase III K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0533 pel1B; pectate lyase, putative, pel1B K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0045 pel1F; pectate lyase, putative, pel1F K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0041 pme8A; pectin methylesterase, putative, pme8A K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0042 pel1D; pectate lyase, putative, pel1D K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0053 pel1E; pectate lyase, putative, pel1E K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_3120 pel1G; pectate lyase, putative, pel1G K01728 pel; pectate lyase [EC:4.2.2.2] D CJA_0016 Fibronectin type III domain protein K20276 bapA; large repetitive protein D CJA_0589 Putative Ig domain family K20276 bapA; large repetitive protein D CJA_1396 putative hemolysin K20276 bapA; large repetitive protein D CJA_2869 cbp26A; carbohydrate binding protein, putative, cbp26A K20276 bapA; large repetitive protein D CJA_1075 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CJA_2659 cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_3521 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0518 cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0914 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_3482 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CJA_2480 man26B; endo-1,4-beta mannanase, man26B K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_3338 man5A; endo-1,4-beta-mannanase man5A K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_0236 man26C; endo-1,4-beta mannanase, putative, man26C K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_2475 man5B; endo-1,4-beta mannanase, man5B K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_2770 man26A; endo-1,4-beta mannanase, man26A K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78] D CJA_2689 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CJA_2698 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CJA_2057 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2058 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2056 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CJA_2055 oppC; oligopeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CJA_2054 peptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CJA_2265 putative oligopeptide binding protein (ABC superfamily, peri_bind)(OppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CJA_3823 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D CJA_0686 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CJA_2670 putative preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG D CJA_0719 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CJA_1660 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CJA_2919 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CJA_3500 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D CJA_3557 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D CJA_1685 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:cja02030] D CJA_0801 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_0182 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1187 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1382 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2086 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2636 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2948 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3469 product exhibits features of a methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3538 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2078 aer-2; aerotaxis receptor Aer-2 K03776 aer; aerotaxis receptor D CJA_2945 cheA-1; chemotaxis sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2138 cheA; histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2944 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2132 CheW K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2133 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2947 cheY-1; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2140 CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_1901 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2281 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2060 conserved hypothetical protein K03410 cheC; chemotaxis protein CheC D CJA_2139 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D CJA_2137 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_2940 cheB-1; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_1934 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CJA_2941 putative cheB, glutamate methylesterase K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D CJA_1933 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_2942 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_1188 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_1714 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CJA_1723 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CJA_1724 fliN; flagellar protein K02417 fliN; flagellar motor switch protein FliN D CJA_2136 transporter, MotA/TolQ/ExbB proton channel family K02556 motA; chemotaxis protein MotA D CJA_1170 motA1; chemotaxis motA protein K02556 motA; chemotaxis protein MotA D CJA_2135 hypothetical protein K02557 motB; chemotaxis protein MotB D CJA_1171 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:cja02040] D CJA_1712 fliE; flagellar hook-basal body complex protein (FliE) K02408 fliE; flagellar hook-basal body complex protein FliE D CJA_1713 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CJA_1714 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CJA_1715 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CJA_1716 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CJA_1717 putative flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D CJA_1721 putative flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D CJA_1722 Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CJA_0165 Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CJA_1723 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CJA_1724 fliN; flagellar protein K02417 fliN; flagellar motor switch protein FliN D CJA_1725 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D CJA_1726 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP D CJA_1727 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CJA_1728 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CJA_2144 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CJA_1729 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CJA_1935 putative flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CJA_1931 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CJA_1930 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CJA_1929 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D CJA_1928 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D CJA_1927 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D CJA_1926 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CJA_1925 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D CJA_1924 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D CJA_1923 acm73B; endo-beta-N-acetylglucosaminidase, putative, acm73B K02395 flgJ; peptidoglycan hydrolase FlgJ D CJA_1922 flgK; flagellar hook-associated protein 1 FlgK K02396 flgK; flagellar hook-associated protein 1 D CJA_1921 flgL; flagellar hook-associated protein type 3 FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D CJA_2588 putative sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D CJA_1917 flaA; flagellin K02406 fliC; flagellin D CJA_1919 flagellin K02406 fliC; flagellin D CJA_1916 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CJA_1701 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CJA_1703 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CJA_1702 conserved hypothetical protein K02423 fliT; flagellar protein FliT D CJA_1920 hypothetical protein K02423 fliT; flagellar protein FliT D CJA_2136 transporter, MotA/TolQ/ExbB proton channel family K02556 motA; chemotaxis protein MotA D CJA_1170 motA1; chemotaxis motA protein K02556 motA; chemotaxis protein MotA D CJA_2135 hypothetical protein K02557 motB; chemotaxis protein MotB D CJA_1171 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CJA_1936 putative negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CJA_1937 FlgN protein superfamily K02399 flgN; flagellar biosynthesis protein FlgN D CJA_0764 rpoD; transcription initiation factor sigma 70 K03086 rpoD; RNA polymerase primary sigma factor D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D CJA_2806 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CJA_1709 fleR; transcriptional activator K10943 flrC; two-component system, response regulator FlrC D CJA_2141 FliA K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D CJA_2542 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:cja01501] D CJA_0442 AmpG protein, beta-lactamase induction signal transducer K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CJA_2650 AmpG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CJA_3564 bla; beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D CJA_2057 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2058 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2056 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CJA_2055 oppC; oligopeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CJA_2054 peptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CJA_0981 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1 D CJA_0980 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CJA_3110 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CJA_1475 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2370 RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2483 acrE; efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_1474 acrB; AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2369 RND transporter, Hydrophobe/Amphiphile Efflux family K18138 acrB; multidrug efflux pump D CJA_2482 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_0411 gt51D; murein polymerase, putative, gt51D K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CJA_0789 mrdA-2; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CJA_2935 ftsI; penicillin-binding protein 3 - Pseudomonas aeruginosa K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:cja01502] D CJA_2927 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CJA_0676 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CJA_2933 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CJA_2932 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CJA_2929 mur28A; mur beta-N-acetylglucosaminyltransferase, putative, mur28A K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cja01503] D CJA_0781 phoQ; Sensory transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CJA_0782 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D CJA_0946 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CJA_1802 abfS; abfS arabinofuranosidase two component system sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CJA_1803 abfR; abfR arabinofuranosidase two component system response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CJA_3082 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CJA_2585 mucD; MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_0424 trypsin domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_3474 dsbA; DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CJA_1792 peptidyl-prolyl cis-trans isomerase A (PPIaseA) (Rotamase A) (Cyclophilin A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_2020 peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_1475 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2370 RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2483 acrE; efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_1474 acrB; AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2369 RND transporter, Hydrophobe/Amphiphile Efflux family K18138 acrB; multidrug efflux pump D CJA_2482 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_1124 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:cja01000] C 01001 Protein kinases [BR:cja01001] D CJA_1645 ppkA; serine/threonine protein kinase PpkA K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D CJA_3701 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_1541 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_3740 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_2546 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_0201 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_3295 putative serine/threonine protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1] D CJA_0622 epsG; EpsG K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CJA_3422 putative polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CJA_0149 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CJA_0781 phoQ; Sensory transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CJA_1802 abfS; abfS arabinofuranosidase two component system sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CJA_1407 creC; two-component sensor CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CJA_2845 baeS; Sensory transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CJA_1856 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CJA_0038 putative two-component regulatory system, sensor kinase protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CJA_3510 probable two-component sensor K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CJA_3177 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CJA_2579 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CJA_1088 two-component system sensor protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D CJA_0250 algZ; AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D CJA_3536 conserved hypothetical protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CJA_3208 pilS; sensor kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CJA_2945 cheA-1; chemotaxis sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2138 cheA; histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_0074 pilL; type IV pili sensor histidine kinase/response regulator PilL K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D CJA_1708 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D CJA_0908 sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D CJA_0359 mmoS; MmoS K20972 retS; two-component system, sensor histidine kinase RetS D CJA_1733 Response regulator receiver domain protein K20972 retS; two-component system, sensor histidine kinase RetS D CJA_1190 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D CJA_0253 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:cja01009] D CJA_0206 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG D CJA_1646 protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D CJA_2960 ACT domain protein/phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:cja01002] D CJA_3216 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CJA_2732 pilD; type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CJA_2103 guaA; GMP synthase, C-domain protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CJA_1516 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0274 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0262 ABC transporter, ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_3604 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_1757 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CJA_3147 glutamate synthase large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CJA_3802 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CJA_3031 cell wall degradation protein K21470 ycbB; L,D-transpeptidase YcbB D CJA_3345 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CJA_2170 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CJA_3625 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D CJA_3166 peptidase, M16 (pitrilysin) family K01407 ptrA; protease III [EC:3.4.24.55] D CJA_3602 peptidase, M16 (pitrilysin) family K01407 ptrA; protease III [EC:3.4.24.55] D CJA_1334 putative peptidase, insulinase family K01408 IDE; insulysin [EC:3.4.24.56] D CJA_1648 Peptidase M16 inactive domain family K06972 PITRM1; presequence protease [EC:3.4.24.-] D CJA_1448 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CJA_1091 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CJA_0579 amaB; N-carbamoyl-L-amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D CJA_1105 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CJA_0294 pepP; aminopeptidase P II K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CJA_2674 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CJA_0517 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D CJA_1332 Peptidase family M48 family K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D CJA_1119 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CJA_0981 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1 D CJA_1294 Regulatory P domain of the subtilisin-like proprotein K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33] D CJA_0276 cbp6B; carbohydrate binding protein, putative, cbp6B K23743 E3.4.24.33; peptidyl-Asp metalloendopeptidase [EC:3.4.24.33] D CJA_2585 mucD; MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_0424 trypsin domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_2792 algW; AlgW protein K04691 hhoB; serine protease DegS [EC:3.4.21.-] D CJA_0793 D-alanyl-D-alanine carboxypeptidase family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CJA_2006 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CJA_2004 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CJA_1697 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CJA_2583 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CJA_3656 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CJA_1735 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CJA_3551 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CJA_3033 Peptidase family S41B family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CJA_2286 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D CJA_2044 possible protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-] D CJA_2172 peptidase, rhomboid family K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D CJA_0405 peptidase, T1 family superfamily K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D CJA_0575 gamma-glutamyltranspeptidase K22602 hpxW; oxamate amidohydrolase [EC:3.5.1.126] D CJA_3631 Alpha-2-macroglobulin family N-terminal region family K06894 yfhM; alpha-2-macroglobulin D CJA_3076 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D CJA_3077 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:cja01003] D CJA_3156 gt39A; glycosyl transferase, putative, gt39A K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109] D CJA_1886 gt5A; ADP-glucose:starch glucosyltransferase, gt5A K00703 glgA; starch synthase [EC:2.4.1.21] D CJA_1025 gt51A; murein polymerase, putative, gt51A K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CJA_3382 gt51B; murein polymerase, putative, gt51B K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CJA_0659 gt51C; murein polymerase, putative, gt51C K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CJA_0411 gt51D; murein polymerase, putative, gt51D K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CJA_0272 gt1B; rhamnosyltransferase, putative, gt1B K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D CJA_3197 gt1C; glycosyl transferase, putative, gt1C K18101 rhlB; rhamnosyltransferase subunit B [EC:2.4.1.-] D CJA_0357 gt2K; glycosyl transferase, putative, gt2K K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D CJA_0617 gt26A; glycosyl transferase, putative, gt26A K13660 gumM; beta-1,4-glucosyltransferase [EC:2.4.1.-] D CJA_0620 gt4J-2; glycosyl transferase, putative, gt4J K13657 gumH; alpha-1,3-mannosyltransferase [EC:2.4.1.252] D CJA_0618 gt70A; UDP-GlcA beta-glucuronosyltransferase, putative, gt70A K13659 gumK; 2-beta-glucuronyltransferase [EC:2.4.1.264] D CJA_0616 gt4J-1; glycosyl transferase, putative, gt4J K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251] D CJA_0066 gt4G; glycosyl transferase, putative, gt4G K26815 manT; MMP alpha-(1->4)-mannosyltransferase [EC:2.4.1.393] C 01005 Lipopolysaccharide biosynthesis proteins [BR:cja01005] D CJA_1124 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CJA_1125 lpx19A; lipid-A-disaccharide synthase, putative, lpx19A K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CJA_2921 lpx11A; UDP-3-0-acyl N-acetylglucosamine deacetylase, putative, lpx11A K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CJA_1122 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CJA_1995 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CJA_1781 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CJA_0060 uvs111; Uvs111 K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_1415 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_2840 htrB; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CJA_0951 lpxO; beta-hydroxylase K12979 lpxO; beta-hydroxylase [EC:1.14.11.-] D CJA_2916 kdt30A; KDO transferase, putative, kdt30A K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CJA_0946 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CJA_2226 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CJA_1782 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CJA_2801 phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CJA_2800 sugar isomerase, KpsF/GutQ family subfamily K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CJA_1369 gt9B; lipopolysaccharide heptosyltransferase, putative, gt9B K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D CJA_0502 gt9A; glycosyl transferase, putative, gt9A K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CJA_0504 gt4E; glycosyl transferase, putative, gt4E K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] D CJA_0503 waaP; lipopolysaccharide core biosynthesis protein WaaP K02848 waaP; lipopolysaccharide core heptose(I) kinase [EC:2.7.1.235] D CJA_0925 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CJA_0055 uvs117; Uvs117 K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D CJA_0509 rfaE; LPS biosynthesis protein RfaE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D CJA_3457 wbpL; Glycosyl transferase group 4-like protein K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-] D CJA_3451 gt2D; glycosyl transferase, putative, gt2D K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D CJA_1622 gt2H; glycosyl transferase, putative, gt2H K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cja01011] D CJA_2796 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CJA_1784 murB; UDP-N-acetylpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CJA_2928 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CJA_2931 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CJA_2934 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CJA_2927 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CJA_0676 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CJA_2190 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CJA_2932 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CJA_2929 mur28A; mur beta-N-acetylglucosaminyltransferase, putative, mur28A K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CJA_0397 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_2207 membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CJA_3219 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D CJA_0411 gt51D; murein polymerase, putative, gt51D K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CJA_0659 gt51C; murein polymerase, putative, gt51C K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CJA_3382 gt51B; murein polymerase, putative, gt51B K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CJA_0789 mrdA-2; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CJA_2935 ftsI; penicillin-binding protein 3 - Pseudomonas aeruginosa K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CJA_0793 D-alanyl-D-alanine carboxypeptidase family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CJA_1025 gt51A; murein polymerase, putative, gt51A K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CJA_3031 cell wall degradation protein K21470 ycbB; L,D-transpeptidase YcbB D CJA_2017 lmt23A; lytic murein transglycosylase, putative, lmt23A K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CJA_0247 plt103B; peptidoglycan lytic transglycosylase, putative, plt103B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D CJA_0791 plt103A; peptidoglycan lytic transglycosylase, putative, plt103A K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D CJA_2053 lmt23B; lytic murein transglycosylase, putative, lmt23B K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D CJA_2597 lmt23C; lytic murein transglycosylase, putative, lmt23C K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D CJA_1680 Uncharacterized BCR, YceG family K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D CJA_0792 Six5 K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CJA_3082 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CJA_2654 ampD; N-acetyl-anhydromuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:cja01004] D CJA_1675 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CJA_1432 probable beta-ketoacyl synthase K18473 fabY; acetoacetyl-[acyl-carrier protein] synthase [EC:2.3.1.180] D CJA_0097 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_0749 fabB; beta-ketoacyl-ACP synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CJA_1678 Beta-ketoacyl synthase, N-terminal domain protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0117 fabF-2; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CJA_0116 putative 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_1676 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_2303 oxidoreductase, short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CJA_0750 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D CJA_1123 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CJA_1411 Short-chain alcohol dehydrogenase superfamily K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CJA_1615 tesA; acyl-CoA thioesterase I K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CJA_0197 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D CJA_2972 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CJA_1075 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CJA_1674 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CJA_0054 uvs118; Uvs118 K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:cja01008] D CJA_2998 pksE; involved in polyketide synthesis K15329 pksE; trans-AT polyketide synthase, acyltransferase and oxidoreductase domains D CJA_1874 MbtH-like protein-related protein K05375 mbtH; MbtH protein D CJA_2999 halA; halogenase A K14257 ctcP; tetracycline 7-halogenase / FADH2 O2-dependent halogenase [EC:1.14.19.49 1.14.19.-] D CJA_2997 pchC; pyochelin biosynthetic protein PchC K12242 pchC; pyochelin biosynthesis protein PchC C 01006 Prenyltransferases [BR:cja01006] D CJA_3335 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CJA_0751 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CJA_1116 uppS; undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CJA_3080 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CJA_0151 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D CJA_0873 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:cja01007] D CJA_1379 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CJA_1681 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CJA_0392 glutamyl- and glutaminyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D CJA_0891 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CJA_2080 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CJA_1682 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CJA_2411 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CJA_1009 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CJA_3217 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CJA_1363 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CJA_0454 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CJA_2478 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CJA_1027 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CJA_1482 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CJA_0057 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CJA_0056 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CJA_2552 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CJA_2467 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CJA_2530 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CJA_1359 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CJA_2526 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CJA_2525 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CJA_2895 maspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CJA_2280 avtA; valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D CJA_2373 aminotransferase, classes I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CJA_1103 aminotransferase, class I K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D CJA_2901 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CJA_0427 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D CJA_1896 patB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CJA_2877 argD acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CJA_1875 diaminobutyrate-2-oxoglutarate transaminase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D CJA_3237 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76] D CJA_2079 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D CJA_0880 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CJA_0501 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CJA_1071 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CJA_0577 pucG; purine catabolism protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:cja00194] D CJA_3808 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CJA_3809 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CJA_3810 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CJA_3811 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CJA_3812 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CJA_3813 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CJA_3814 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CJA_3815 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CJA_3816 putative membrane protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:cja03000] D CJA_3029 transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator D CJA_1634 putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CJA_0667 LysR substrate binding domain protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D CJA_2446 metR-1; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D CJA_3492 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CJA_3151 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CJA_1945 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D CJA_1147 rbcR; rubisco operon transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D CJA_1201 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D CJA_1165 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CJA_1495 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CJA_0240 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CJA_3595 putative Fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D CJA_0847 transcriptional regulatory protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D CJA_2253 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D CJA_3526 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D CJA_0541 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D CJA_1040 inactive regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CJA_0965 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CJA_1473 transcriptional regulator, TetR family K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D CJA_0023 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CJA_2085 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D CJA_2025 hmrR2; MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1837 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1624 hmrR; heavy metal regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_3352 fur; transcriptional regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CJA_3482 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CJA_2659 cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_3521 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0518 cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0914 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_2196 anr; Transcriptional activator protein anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CJA_1465 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D CJA_1549 rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D CJA_3700 arsR; arsenic resistance operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CJA_1374 transcriptional activator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D CJA_0980 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CJA_0677 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CJA_2746 fis; Hin recombinational enhancer binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CJA_0821 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D CJA_0008 transcriptional regulatory protein K15836 fhlA; formate hydrogenlyase transcriptional activator D CJA_0319 modE; MopB-like protein K02019 modE; molybdate transport system regulatory protein D CJA_2203 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CJA_3817 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CJA_3377 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D CJA_0083 Uncharacterized ACR K07735 algH; putative transcriptional regulator D CJA_0393 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D CJA_2699 conserved hypothetical protein TIGR00244 K07738 nrdR; transcriptional repressor NrdR D CJA_2938 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:cja03021] D CJA_0724 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CJA_0692 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CJA_0693 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CJA_3570 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CJA_0764 rpoD; transcription initiation factor sigma 70 K03086 rpoD; RNA polymerase primary sigma factor D CJA_2218 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D CJA_2213 RNA polymerase sigma-H factor (Sigma-30) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CJA_3024 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CJA_0661 algT; RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CJA_2297 fecI; Probable fecI Specialized sigma subunits of RNA K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily D CJA_3497 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D CJA_2806 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CJA_2141 FliA K02405 fliA; RNA polymerase sigma factor FliA D CJA_1981 hepA; RNA polymerase-associated protein HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D CJA_0435 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CJA_2693 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CJA_0687 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CJA_2783 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D CJA_1486 response regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D CJA_2212 mucA; mucA K03597 rseA; sigma-E factor negative regulatory protein RseA D CJA_2211 mucB; sigma factor algU regulatory protein MucB K03598 rseB; sigma-E factor negative regulatory protein RseB D CJA_2210 mucC; positive regulator for alginate biosynthesis MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D CJA_0393 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D CJA_2685 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA D CJA_1011 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D CJA_0361 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CJA_0248 Modulator of Rho-dependent transcription termination (ROF) superfamily K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:cja03019] D CJA_1667 ribonuclease, Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CJA_2813 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CJA_2581 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CJA_2995 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CJA_3117 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CJA_0969 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D CJA_1706 Superfamily II DNA and RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CJA_1641 ATP-dependent RNA helicase, DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CJA_1979 deaD-1; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CJA_0125 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CJA_0440 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CJA_0361 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CJA_3347 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CJA_2646 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CJA_3079 hfq; Hfq protein K03666 hfq; host factor-I protein D CJA_3560 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CJA_1575 polyphosphate kinase family protein K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] D CJA_0388 pcnB; polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D CJA_0465 hydrolase, NUDIX family K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D CJA_1361 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CJA_2809 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ D CJA_2367 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D CJA_2847 putative HrpA-like helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:cja03011] D CJA_2114 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CJA_1110 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CJA_0705 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CJA_0723 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CJA_0716 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CJA_2982 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CJA_0695 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CJA_0713 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CJA_2786 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CJA_0698 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CJA_0722 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CJA_0694 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CJA_0721 rpsM; ribosomal protein S13p/S18e K02952 RP-S13; small subunit ribosomal protein S13 D CJA_0712 rpsN; ribosomal protein S14p/S29e K02954 RP-S14; small subunit ribosomal protein S14 D CJA_0439 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CJA_1433 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CJA_0708 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CJA_2981 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CJA_0703 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CJA_0852 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CJA_0767 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CJA_0689 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CJA_0702 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CJA_0699 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CJA_0700 rplD; ribosomal protein L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4 D CJA_0711 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CJA_0714 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CJA_2980 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CJA_0690 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CJA_0688 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CJA_0691 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CJA_2787 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CJA_0709 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CJA_0718 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CJA_0706 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CJA_0725 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CJA_0715 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CJA_1436 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CJA_2527 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CJA_0458 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CJA_0704 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CJA_0701 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CJA_0710 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CJA_0459 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CJA_3515 ribosomal protein L28-related protein K02902 RP-L28; large subunit ribosomal protein L28 D CJA_0707 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CJA_0717 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CJA_0409 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CJA_1673 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CJA_3514 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CJA_3826 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CJA_2528 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CJA_0720 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CJA_0643 ribosomal protein L25, Ctc-form K02897 RP-L25; large subunit ribosomal protein L25 D CJA_3864 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3886 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3892 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3859 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3881 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3888 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3863 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3885 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3891 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:cja03009] D CJA_2581 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CJA_3117 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CJA_2580 era; GTP-binding protein Era K03595 era; GTPase D CJA_0460 GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-] D CJA_0393 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D CJA_0435 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CJA_2693 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CJA_0687 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CJA_1966 rsuA1; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D CJA_0861 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CJA_3580 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CJA_2422 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CJA_1967 putative ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D CJA_3501 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CJA_0070 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CJA_3819 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CJA_2937 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CJA_0928 conserved hypothetical protein TIGR00096 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CJA_0983 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D CJA_1391 rrmA; rRNA guanine-N1-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D CJA_2994 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CJA_1790 RNA methyltransferase, TrmH family K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CJA_2675 rrmJ; ribosomal RNA large subunit J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D CJA_0788 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CJA_0463 putative lipoprotein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CJA_2374 predicted SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CJA_3372 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D CJA_2156 Putative RNA methylase family UPF0020 family K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D CJA_2381 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D CJA_1478 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CJA_2576 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CJA_1991 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1082 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1971 pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1611 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1800 RNA pseudouridylate synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CJA_1669 pseudouridine synthase, RluA family subfamily K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CJA_3205 pseudouridine synthase, RluA family subfamily K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CJA_2572 pseudouridylate synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D CJA_0906 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D CJA_1251 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D CJA_1434 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D CJA_1894 MiaB-like tRNA modifying enzyme YliG, TIGR01125 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D CJA_2742 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CJA_1950 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D CJA_2493 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D CJA_1667 ribonuclease, Rne/Rng family protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CJA_2813 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CJA_0084 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D CJA_0306 DbpA RNA binding domain family K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D CJA_1979 deaD-1; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CJA_1387 ATP-dependent RNA helicase, DEAD box family K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D CJA_3118 GTPase, YjeQ family K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CJA_1485 GTP-binding protein EngA K03977 engA; GTPase D CJA_1443 predicted GTPase K14540 rbgA; ribosome biogenesis GTPase A D CJA_3078 hypothetical protein K03665 hflX; GTPase D CJA_3586 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CJA_3571 spoT; guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CJA_0437 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D CJA_0434 Uncharacterized BCR, YhbC family K09748 rimP; ribosome maturation factor RimP D CJA_0787 iojap domain protein K09710 ybeB; ribosome-associated protein D CJA_1637 hypothetical protein K07042 ybeY; probable rRNA maturation factor D CJA_2676 hypothetical protein K07574 yhbY; RNA-binding protein D CJA_2812 conserved hypothetical protein K09889 yjgA; ribosome-associated protein D CJA_2157 ribosome modulation factor-related protein K03812 rmf; ribosome modulation factor D CJA_2807 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D CJA_0641 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D CJA_1672 predicted metal-binding/nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:cja03016] D CJA_0773 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D CJA_1379 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CJA_2467 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CJA_3217 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CJA_0454 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CJA_1009 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CJA_1681 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CJA_2411 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CJA_2478 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CJA_1027 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CJA_1359 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CJA_2530 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CJA_2552 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CJA_1682 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CJA_1363 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CJA_1482 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CJA_2526 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CJA_2525 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CJA_0891 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CJA_2080 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CJA_3655 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D CJA_1976 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CJA_3495 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CJA_0235 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D CJA_1749 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CJA_0438 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CJA_2221 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D CJA_1466 cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CJA_3586 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CJA_3080 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CJA_3822 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CJA_3820 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CJA_0312 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D CJA_3825 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CJA_2590 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D CJA_0203 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D CJA_2089 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D CJA_2438 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D CJA_1314 probable ATP-binding component of ABC transporter K06020 ettA; energy-dependent translational throttle protein EttA D CJA_0057 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CJA_0056 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CJA_0392 glutamyl- and glutaminyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D CJA_0920 YbaK / prolyl-tRNA synthetases associated domain protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D CJA_1345 Cytidine and deoxycytidylate deaminase zinc-binding region domain protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CJA_1490 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D CJA_2745 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CJA_1386 dihydrouridine synthase family protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D CJA_1640 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CJA_1807 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D CJA_1805 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D CJA_1651 smtA; smtA protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D CJA_2186 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D CJA_1435 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CJA_1464 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D CJA_2402 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CJA_2664 rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family D CJA_1965 RNA pseudouridine synthase family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D CJA_1991 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1082 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1971 pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_1611 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CJA_2490 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CJA_2075 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CJA_2379 SirA protein homolog K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CJA_1333 Uncharacterized protein family UPF0033 family K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CJA_1662 dsrH; DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D CJA_1663 DsrE/DsrF-like family K07236 tusC; tRNA 2-thiouridine synthesizing protein C D CJA_1664 dsrE; dsrE protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D CJA_1661 DsrC K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D CJA_2216 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ D CJA_1997 miaE; tRNA-(MS[2]IO[6]A)-hydroxylase subfamily K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D CJA_2405 D-amino acid oxidase family protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D CJA_1456 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CJA_2835 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CJA_2836 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CJA_1554 GTP cyclohydrolase I family protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CJA_3093 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CJA_1457 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CJA_3531 thiI; thiazole biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CJA_1016 mesJ; mesJ protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CJA_2083 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CJA_0768 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CJA_3086 conserved hypothetical protein TIGR00150 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CJA_1185 ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D CJA_2995 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CJA_0440 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CJA_3607 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D CJA_1576 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:cja03012] D CJA_1328 putative translation initation factor SUI1 K03113 EIF1; translation initiation factor 1 D CJA_0436 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CJA_2529 infC; initiation factor 3 K02520 infC; translation initiation factor IF-3 D CJA_3547 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CJA_1111 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CJA_0684 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_0697 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_0696 translation elongation factor G K02355 fusA; elongation factor G D CJA_1060 translation elongation factor G K02355 fusA; elongation factor G D CJA_0652 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CJA_1115 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D CJA_0653 methyltransferase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D CJA_0642 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CJA_2567 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CJA_2149 efp; translation elongation factor P K02356 efp; elongation factor P D CJA_2479 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D CJA_0910 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D CJA_2209 peptidyl-tRNA hydrolase domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:cja03110] D CJA_2568 clpA; ATP-binding protease component ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D CJA_3194 clpB; ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D CJA_2005 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CJA_0404 hslU; heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG D CJA_3347 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CJA_1169 hscC; chaperone protein hscC K04045 hscC; molecular chaperone HscC D CJA_2646 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CJA_3346 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CJA_2612 DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein D CJA_0307 hslO; heat shock protein HSP33 K04083 hslO; molecular chaperone Hsp33 D CJA_3348 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CJA_1092 hspC2; small heat shock protein K13993 HSP20; HSP20 family protein D CJA_1093 16 kDa heat shock protein A K04080 ibpA; molecular chaperone IbpA D CJA_1430 16 kDa heat shock protein A K04080 ibpA; molecular chaperone IbpA D CJA_0309 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D CJA_2647 groES; GroES protein K04078 groES; chaperonin GroES D CJA_2585 mucD; MucD K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_0424 trypsin domain protein K04771 degP; serine protease Do [EC:3.4.21.107] D CJA_2674 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CJA_3815 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CJA_1286 fimC; type 1 pilus chaperone FimC K07346 fimC; fimbrial chaperone protein D CJA_3557 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D CJA_1804 putative periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy D CJA_0874 conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A D CJA_0350 hex20A; N-acetyl-beta-hexosaminidase, putative, hex20A K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_0287 hex20B; beta-hexaminidase, putative, hex20B K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CJA_1792 peptidyl-prolyl cis-trans isomerase A (PPIaseA) (Rotamase A) (Cyclophilin A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_2020 peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_1994 ppiB-1; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D CJA_2002 putative peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D CJA_0161 macrophage infectivity potentiator K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D CJA_1151 fklB; peptidylprolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D CJA_3215 peptidyl-prolyl cis-trans isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D CJA_0753 peptidyl-prolyl cis-trans isomerase, FkbP family K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D CJA_1627 FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D CJA_2519 peptidyl-prolyl cis-trans isomerase D K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D CJA_0859 surA; peptidyl-prolyl cis-trans isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D CJA_0360 trx; thioredoxin K03671 TXN; thioredoxin D CJA_1441 thioredoxin-like protein K05838 ybbN; putative thioredoxin D CJA_3556 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D CJA_2843 glutaredoxin homolog K07390 grxD; monothiol glutaredoxin D CJA_3474 dsbA; DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CJA_0163 dsbH; protein-disulfide reductase K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D CJA_1438 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D CJA_2063 uvs015; Uvs015 K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:cja04131] D CJA_1477 ndk; nucleotide diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CJA_1975 Uncharacterized protein family UPF0016 family K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D CJA_1353 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CJA_1354 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG D CJA_0521 transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system [BR:cja04121] C 03051 Proteasome [BR:cja03051] D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:cja03032] D CJA_2049 rnhA; RNase H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CJA_2003 DNA-binding protein HU superfamily K03530 hupB; DNA-binding protein HU-beta D CJA_0153 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CJA_2524 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CJA_2113 himD; himD/ihfB K05788 ihfB; integration host factor subunit beta D CJA_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CJA_2978 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CJA_0765 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_1127 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CJA_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CJA_1447 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CJA_0452 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CJA_1989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CJA_2048 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CJA_2441 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CJA_1126 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CJA_1632 DnaA family protein K10763 hda; DnaA-homolog protein D CJA_2125 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CJA_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CJA_3132 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CJA_2903 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CJA_2010 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:cja03036] D CJA_2581 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CJA_2003 DNA-binding protein HU superfamily K03530 hupB; DNA-binding protein HU-beta D CJA_0153 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CJA_2524 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CJA_2113 himD; himD/ihfB K05788 ihfB; integration host factor subunit beta D CJA_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CJA_2432 Dps family protein K04047 dps; starvation-inducible DNA-binding protein D CJA_2746 fis; Hin recombinational enhancer binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CJA_3079 hfq; Hfq protein K03666 hfq; host factor-I protein D CJA_0023 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CJA_1041 ndpA; nucleoid-associated protein NdpA superfamily K06899 ndpA; nucleoid-associated protein D CJA_1911 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D CJA_1798 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D CJA_1799 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D CJA_2925 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CJA_2224 Septum formation initiator superfamily K05589 ftsB; cell division protein FtsB D CJA_3499 ftsE; cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CJA_2935 ftsI; penicillin-binding protein 3 - Pseudomonas aeruginosa K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CJA_2556 ftsK; DNA translocase ftsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CJA_2936 cell division protein FtsL K03586 ftsL; cell division protein FtsL D CJA_2926 ftsQ; FtsQ K03589 ftsQ; cell division protein FtsQ D CJA_2930 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D CJA_3498 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CJA_2923 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CJA_1910 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D CJA_0291 Family of unknown function (DUF710) superfamily K09888 zapA; cell division protein ZapA D CJA_0292 putative conserved hypothetical protein TIGR02449 K09892 zapB; cell division protein ZapB D CJA_2788 Predicted ATPase K06916 zapE; cell division protein ZapE D CJA_3082 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CJA_1475 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2370 RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2483 acrE; efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_1318 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CJA_1319 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CJA_1320 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CJA_1696 conserved domain protein K13053 sulA; cell division inhibitor SulA D CJA_3526 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D CJA_2817 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CJA_2816 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CJA_2815 putative rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D CJA_0790 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CJA_3818 soj; chromosome partitioning protein Soj K03496 parA; chromosome partitioning protein D CJA_2134 ParA family protein K03496 parA; chromosome partitioning protein D CJA_0144 probable partition-related protein K03496 parA; chromosome partitioning protein D CJA_0368 ATPase, ParA family K03496 parA; chromosome partitioning protein D CJA_1579 phage-related regulatory protein cII K03496 parA; chromosome partitioning protein D CJA_3817 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CJA_3132 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CJA_2903 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CJA_3820 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CJA_3819 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CJA_3288 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D CJA_1437 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D CJA_2481 CobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CJA_1577 fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D CJA_3477 putative GTPase, involved in coordination of cell cycle (EngB) K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:cja03400] D CJA_3721 methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CJA_1942 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CJA_1068 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CJA_0666 possible DNA-3-methyladenine glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CJA_0530 mutY; A / G specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CJA_1102 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CJA_2917 putative mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CJA_3063 nuhA; Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CJA_1634 putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CJA_3658 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CJA_3505 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CJA_1734 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CJA_3529 crc; catabolite repression control protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CJA_1614 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CJA_1909 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CJA_3478 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CJA_0726 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CJA_2425 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CJA_1786 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CJA_3566 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_3729 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CJA_0692 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CJA_0693 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CJA_0724 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CJA_3570 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CJA_1764 mfd; transcription-repair coupling protein Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CJA_2356 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CJA_3081 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CJA_2637 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D CJA_2105 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CJA_3334 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CJA_1127 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CJA_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CJA_1447 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CJA_0452 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CJA_1989 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CJA_2048 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CJA_2441 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_2230 recA; recA protein K03553 recA; recombination protein RecA D CJA_1030 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CJA_1031 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CJA_1029 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CJA_0407 priA; primosomal protein N` K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CJA_2600 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 D CJA_1269 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D CJA_0003 recF; RecF protein K03629 recF; DNA replication and repair protein RecF D CJA_3491 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_3639 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_1578 putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CJA_2578 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CJA_2439 recR; recombination protein RecR K06187 recR; recombination protein RecR D CJA_3351 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CJA_1150 rdgC; recombinaison associated protein K03554 rdgC; recombination associated protein RdgC D CJA_2452 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D CJA_1322 conserved domain protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D CJA_2125 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CJA_0004 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CJA_2010 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CJA_2003 DNA-binding protein HU superfamily K03530 hupB; DNA-binding protein HU-beta D CJA_0153 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CJA_2746 fis; Hin recombinational enhancer binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CJA_2524 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CJA_2113 himD; himD/ihfB K05788 ihfB; integration host factor subunit beta D CJA_0125 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CJA_1697 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CJA_2886 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D CJA_2228 Regulatory protein recX K03565 recX; regulatory protein D CJA_3396 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CJA_2417 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CJA_1569 nrdA; ribonucleoside reductase, large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CJA_1568 nrdB; ribonucleoside reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:cja03029] D CJA_2784 petB; ubiquinol--cytochrome c reductase, cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D CJA_0436 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CJA_2529 infC; initiation factor 3 K02520 infC; translation initiation factor IF-3 D CJA_1111 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CJA_0684 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_0697 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_0696 translation elongation factor G K02355 fusA; elongation factor G D CJA_1060 translation elongation factor G K02355 fusA; elongation factor G D CJA_2580 era; GTP-binding protein Era K03595 era; GTPase D CJA_0891 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CJA_0454 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CJA_1027 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CJA_2411 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CJA_2819 gatA; glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CJA_2820 gatB; glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit subfamily K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CJA_2818 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CJA_0728 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CJA_1120 outer membrane protein, bacterial surface antigen family K07277 SAM50; outer membrane protein insertion porin family D CJA_3347 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CJA_3348 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CJA_2646 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CJA_2647 groES; GroES protein K04078 groES; chaperonin GroES D CJA_3346 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CJA_1466 cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CJA_2843 glutaredoxin homolog K07390 grxD; monothiol glutaredoxin D CJA_2481 CobQ/CobB/MinD/ParA nucleotide binding domain protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CJA_0873 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CJA_0867 coxG; cytochrome oxidase assembly factor K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D CJA_0872 uncharacterized protein required for cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D CJA_3823 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D CJA_0870 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein D CJA_0875 SCO1/SenC superfamily K07152 SCO1; protein SCO1 D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:cja02000] D CJA_0508 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CJA_2314 ABC-transport protein, ATP-binding component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_2313 ABC-transport protein, ATP-binding component K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_1516 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0274 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0262 ABC transporter, ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_3604 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0141 ABC transporter, ATP-binding protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D CJA_1523 ABC-type multidrug efflux pump K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D CJA_2341 ABC transporter protein, ATP-binding component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CJA_2340 putative transport protein (ABC superfamily, atp_bind and membrane) K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CJA_1393 toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D CJA_2533 macrolide ABC efflux protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CJA_1867 pvdE; pyoverdine ABC transporter, permease/ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D CJA_2015 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D CJA_2349 cysP; thiosulfate ABC transporter, periplasmic thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CJA_2243 sulfate ABC transporter, periplasmic binding protein component K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CJA_2348 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2242 sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CJA_2347 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2241 sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CJA_2240 cysA-2; sulfate/thiosulfate import ATP-binding protein cysA 2 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CJA_0316 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CJA_0317 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CJA_0318 modC; ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CJA_0009 nrtA; ABC transporter nitrate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0529 nitrate-binding protein nrtA precursor, periplasmic K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D CJA_0010 possible nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0528 nitrate ABC transporter permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D CJA_0939 nitrate transporter system, ATPase component K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_0011 nrtC; ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D CJA_2324 putative ABC transporter, substrate binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2256 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D CJA_2323 AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2321 atsB; AtsB K15554 ssuC; sulfonate transport system permease protein D CJA_2257 ABC transporter, permease protein K15554 ssuC; sulfonate transport system permease protein D CJA_2343 AtsC K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_2258 ABC transporter ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D CJA_1574 ABC transporter substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_1591 ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_3620 putative Bacterial extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CJA_1590 afuB_2; ABC transporter permease protein K02011 afuB; iron(III) transport system permease protein D CJA_3619 Binding-protein-dependent transport systems inner membrane component domain protein K02011 afuB; iron(III) transport system permease protein D CJA_3618 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CJA_1592 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CJA_2718 ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CJA_2719 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D CJA_2720 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CJA_3468 Bacterial extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D CJA_3019 ABC transporter periplasmic binding protein K23508 ytfQ; galactofuranose transport system substrate-binding protein D CJA_3022 putative ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D CJA_3021 sugar ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D CJA_3020 sugar ABC transporter ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D CJA_0542 bmp family protein K07335 bmpA; basic membrane protein A and related proteins D CJA_0544 permease protein of sugar ABC transporter K23535 nupB; general nucleoside transport system permease protein D CJA_0543 ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CJA_0545 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CJA_1608 conserved domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CJA_1610 ABC-type transport system, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CJA_1609 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CJA_2798 Toluene tolerance, Ttg2 superfamily K07323 mlaC; phospholipid transport system substrate-binding protein D CJA_2782 pstS; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_1142 OmpA family protein K02040 pstS; phosphate transport system substrate-binding protein D CJA_2781 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein D CJA_2780 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein D CJA_2779 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CJA_0956 amide-urea binding protein K11959 urtA; urea transport system substrate-binding protein D CJA_1241 ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D CJA_1240 Branched-chain amino acid transport system / permease component domain protein K11960 urtB; urea transport system permease protein D CJA_0957 amino acid/sugar ABC transporter, permease protein K11960 urtB; urea transport system permease protein D CJA_0958 fmdF; ABC transporter permease protein K11961 urtC; urea transport system permease protein D CJA_1239 possible permease of ABC transporter K11961 urtC; urea transport system permease protein D CJA_1238 branched-chain amino acid ABC transporter, ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D CJA_0959 ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D CJA_1237 putative branched-chain amino acid transport protein (ABC superfamily, ATP_bind) K11963 urtE; urea transport system ATP-binding protein D CJA_0960 ABC transporter ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D CJA_2540 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CJA_2700 putative amino acid ABC transporter, periplasmic amino acid-binding portion K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CJA_2057 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2058 oligopeptide ABC transporter periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CJA_2056 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CJA_2055 oppC; oligopeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CJA_2054 peptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CJA_2265 putative oligopeptide binding protein (ABC superfamily, peri_bind)(OppA) K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CJA_2249 Bacterial extracellular solute-binding protein, family 5 domain protein K13893 yejA; microcin C transport system substrate-binding protein D CJA_2291 Bacterial extracellular solute-binding protein, family 5 domain protein K13893 yejA; microcin C transport system substrate-binding protein D CJA_2252 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein D CJA_2290 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein D CJA_2251 Binding-protein-dependent transport systems inner membrane component domain protein K13895 yejE; microcin C transport system permease protein D CJA_2250 ABC transporter domain protein K13896 yejF; microcin C transport system ATP-binding protein D CJA_3772 probable permease of ABC transporter K25133 hmuU; heme transport system permease protein D CJA_3771 heme/hemin ABC transporter, ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D CJA_3767 Periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CJA_3480 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein D CJA_3484 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D CJA_3483 znuC; zinc ABC transporter, ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CJA_3439 wzm; Wzm K09690 wzm; homopolymeric O-antigen transport system permease protein D CJA_3440 wzt; Wzt K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D CJA_1449 putative permease, YjgP/YjgQ family superfamily K07091 lptF; lipopolysaccharide export system permease protein D CJA_1450 putative permease, YjgP/YjgQ family K11720 lptG; lipopolysaccharide export system permease protein D CJA_2804 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CJA_0604 ABC-2 type transporter K09696 natB; sodium transport system permease protein D CJA_0603 natA; sodium ABC transporter ATP-binding protein K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CJA_1095 putative membrane protein K25151 gldF; gliding motility-associated transport system permease protein D CJA_1094 ABC transporter domain protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D CJA_1775 efflux ABC transporter, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D CJA_1777 lipoprotein releasing system, permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D CJA_1776 insulin-like growth factor I K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CJA_2066 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D CJA_2067 heme exporter protein C K02195 ccmC; heme exporter protein C D CJA_2068 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D CJA_2069 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D CJA_3498 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CJA_3499 ftsE; cell division ABC transporter, ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CJA_1553 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D CJA_3189 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CJA_3190 ABC-2 type transporter domain protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CJA_3614 ABC-type multidrug transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D CJA_0599 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CJA_1552 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CJA_3615 ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CJA_1617 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_3461 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_0027 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_0030 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_0028 putative ABC transporter, ATP-binding protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_0031 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CJA_0029 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CJA_0260 phnL; ABC transporter, ATP-binding subunit K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CJA_1616 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CJA_3462 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CJA_1468 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D CJA_2900 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CJA_3309 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CJA_3379 MATE efflux family protein subfamily K26937 dinF; MATE family, multidrug efflux pump D CJA_0909 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D CJA_1618 MATE domain protein K26937 dinF; MATE family, multidrug efflux pump D CJA_3064 xylE; MFS transporter K08139 HXT; MFS transporter, SP family, sugar:H+ symporter D CJA_1132 fucP; L-fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D CJA_1494 Glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D CJA_1161 gluP; glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D CJA_1446 Sugar efflux transporter A K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D CJA_2192 exuT; hexuronate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D CJA_1948 putative transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D CJA_3699 Permease of the major facilitator superfamily K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D CJA_0330 nitrate permease K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CJA_0442 AmpG protein, beta-lactamase induction signal transducer K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CJA_2650 AmpG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CJA_1707 bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D CJA_0143 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D CJA_0233 putative transmembrane efflux protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D CJA_0521 transporter K06902 UMF1; MFS transporter, UMF1 family D CJA_0466 phosphoenolpyruvate-protein phosphotransferase PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D CJA_2810 pstH; Phosphocarrier protein HPr (Histidine-containing protein) K08485 ptsO; phosphocarrier protein NPr D CJA_2808 ptsN; phosphotransferase enzyme IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D CJA_2112 ammonium transporter K03320 amt; ammonium transporter, Amt family D CJA_3391 ammonium transporter K03320 amt; ammonium transporter, Amt family D CJA_0484 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CJA_0605 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CJA_1174 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog D CJA_2165 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog D CJA_2166 TPR domain protein K07114 yfbK; Ca-activated chloride channel homolog D CJA_1665 integral membrane protein K19416 yccA; modulator of FtsH protease D CJA_2263 formate/nitrate transporter K21993 fdhC; formate transporter D CJA_1002 small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D CJA_0167 transporter, small conductance mechanosensitive ion channel (MscS) family K16053 ybdG; miniconductance mechanosensitive channel D CJA_2136 transporter, MotA/TolQ/ExbB proton channel family K02556 motA; chemotaxis protein MotA D CJA_1170 motA1; chemotaxis motA protein K02556 motA; chemotaxis protein MotA D CJA_2135 hypothetical protein K02557 motB; chemotaxis protein MotB D CJA_1171 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CJA_2588 putative sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D CJA_1779 MotA/TolQ/ExbB proton channel family domain protein K03561 exbB; biopolymer transport protein ExbB D CJA_0473 TonB system transport protein ExbB2 K03561 exbB; biopolymer transport protein ExbB D CJA_2328 exbB1; ExbB K03561 exbB; biopolymer transport protein ExbB D CJA_1300 exbB; ExbB K03561 exbB; biopolymer transport protein ExbB D CJA_0472 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB D CJA_0567 TolR K03561 exbB; biopolymer transport protein ExbB D CJA_0568 TonB system transport protein ExbB2 K03561 exbB; biopolymer transport protein ExbB D CJA_3315 aglR; adventurous gliding motility protein R K03561 exbB; biopolymer transport protein ExbB D CJA_0474 TonB system transport protein ExbD2 K03559 exbD; biopolymer transport protein ExbD D CJA_0569 TonB system transport protein ExbD2 K03559 exbD; biopolymer transport protein ExbD D CJA_1299 exbD; ExbD K03559 exbD; biopolymer transport protein ExbD D CJA_1780 ExbD/TolR family protein K03559 exbD; biopolymer transport protein ExbD D CJA_2329 exbD1; ExbD K03559 exbD; biopolymer transport protein ExbD D CJA_1032 tolQ-2; tolQ protein K03562 tolQ; biopolymer transport protein TolQ D CJA_1033 tolR; TolR protein K03560 tolR; biopolymer transport protein TolR D CJA_0771 putative magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D CJA_2839 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D CJA_2553 crcB; crcB protein K06199 crcB; fluoride exporter D CJA_1291 uvs045; Uvs045 K03699 tlyC; magnesium and cobalt exporter, CNNM family D CJA_3662 OmpA-like transmembrane domain protein K16079 omp31; outer membrane immunogenic protein D CJA_1293 ompA; outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family D CJA_3494 oprF; OmpA domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D CJA_0064 putative OmpA-like transmembrane domain K03286 TC.OOP; OmpA-OmpF porin, OOP family D CJA_2521 fadL; Putative fatty acid transport system, membrane protein K06076 fadL; long-chain fatty acid transport protein D CJA_1287 fimD; type 1 pili usher protein FimD K07347 fimD; outer membrane usher protein D CJA_1963 outer membrane iron(III) dicitrate receptor K16091 fecA; Fe(3+) dicitrate transport protein D CJA_3775 putative TonB-dependent receptor K16092 btuB; vitamin B12 transporter D CJA_2867 putative TonB-dependent receptor protein K16092 btuB; vitamin B12 transporter D CJA_1868 TonB-dependent receptor protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_2292 TonB-dependent receptor protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_1298 ferripyoverdine receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_1308 TonB-dependent receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_0560 outer membrane ferric siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_2301 Ferric-pseudobactin 358 receptor precursor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D CJA_2539 cirA2; exogenous ferric siderophore TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D CJA_0755 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D CJA_2679 hasR; HasR K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D CJA_1197 hupA; hypothetical heme receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D CJA_2031 prrA; TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_1306 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2312 ferrisiderophore receptor-like protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2873 iron transporter K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3233 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0565 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2333 putative tonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0733 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3304 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2295 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3722 TonB-dependent ferric achromobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_1157 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0800 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0353 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0929 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0498 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_1050 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_1069 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2246 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2287 putative tonB-dependent receptor protein (outer membrane salicin receptor) K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2298 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0039 putative TonB dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_0171 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2709 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_2882 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3160 tonB dependent receptor-related protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3244 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3246 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3298 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3466 putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3596 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CJA_3697 putative cation efflux system protein K15725 czcC; outer membrane protein, heavy metal efflux system D CJA_1841 czcC; cation efflux system protein K15725 czcC; outer membrane protein, heavy metal efflux system D CJA_2026 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_1392 probable agglutination protein K12543 lapE; outer membrane protein, adhesin transport system D CJA_0624 epsE; EpsE K01991 wza; polysaccharide biosynthesis/export protein D CJA_3424 Polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein D CJA_1120 outer membrane protein, bacterial surface antigen family K07277 SAM50; outer membrane protein insertion porin family D CJA_1484 PQQ enzyme repeat domain protein K17713 bamB; outer membrane protein assembly factor BamB D CJA_2829 putative lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D CJA_3206 competence protein ComL K05807 bamD; outer membrane protein assembly factor BamD D CJA_3353 Outer membrane lipoprotein omlA precursor K06186 bamE; outer membrane protein assembly factor BamE D CJA_3371 outer membrane protein, OMP85 family K07278 tamA; translocation and assembly module TamA D CJA_3370 putative membrane protein K09800 tamB; translocation and assembly module TamB D CJA_1017 putative lipoprotein K21449 ata; trimeric autotransporter adhesin D CJA_2803 OstA-like protein superfamily K09774 lptA; lipopolysaccharide export system protein LptA D CJA_2802 conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D CJA_0858 putative organic solvent tolerance protein K04744 lptD; LPS-assembly protein D CJA_0453 putative rare lipoprotein B precursor K03643 lptE; LPS-assembly lipoprotein D CJA_1636 magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein D CJA_0730 transporter, major facilitator family K16211 malY; maltose/moltooligosaccharide transporter D CJA_1108 gufA protein K07238 TC.ZIP; zinc transporter, ZIP family D CJA_3487 putative integral membrane protein K07238 TC.ZIP; zinc transporter, ZIP family D CJA_1843 heavy metal efflux pump, CzcA family subfamily K15726 czcA; heavy metal efflux system protein D CJA_3695 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D CJA_1831 heavy metal RND efflux transporter, CzcA family K07787 cusA; copper/silver efflux system protein D CJA_1474 acrB; AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2369 RND transporter, Hydrophobe/Amphiphile Efflux family K18138 acrB; multidrug efflux pump D CJA_2482 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_0372 RND transporter, Hydrophobe/Amphiphile Efflux family K07788 mdtB; multidrug efflux pump D CJA_0371 RND efflux transporter, permease protein K07789 mdtC; multidrug efflux pump D CJA_3192 qacG; quaternary ammonium compound resistance protein K03297 emrE; small multidrug resistance pump D CJA_3703 putative inner membrane lipoprotein K09771 TC.SMR3; small multidrug resistance family-3 protein D CJA_0346 gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D CJA_1604 lctP; L-lactate permease K03303 lutP; lactate permease D CJA_1888 uvs037; Uvs037 K07301 yrbG; cation:H+ antiporter D CJA_3234 transporter, solute:sodium symporter (SSS) family K11928 putP; sodium/proline symporter D CJA_1085 sodium:solute symporter family protein K14393 actP; cation/acetate symporter D CJA_1514 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D CJA_2088 Cell volume regulation protein A homolog K11105 cvrA; potassium/hydrogen antiporter D CJA_2911 putative pH regulated Na(+)/H(+) antiporter K11105 cvrA; potassium/hydrogen antiporter D CJA_0883 putative membrane protein K03316 nhaP; Na+:H+ antiporter D CJA_3513 kefB; glutathione-regulated potassium-efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D CJA_1173 transporter, monovalent cation:proton antiporter-2 (CPA2) family K26735 KEA4_5_6; K+:H+ antiporter D CJA_3152 cation:proton antiporter K26731 CHX; K+:H+ antiporter D CJA_3532 transporter, monovalent cation:proton antiporter family K26731 CHX; K+:H+ antiporter D CJA_1857 trkH-2; potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D CJA_3579 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein D CJA_0884 voltage-gated chloride channel K03281 clcA; chloride channel protein, CIC family D CJA_1307 chrA; chromate transporter K07240 chrA; chromate transporter D CJA_1149 sul1; sulfate permease family protein K03321 TC.SULP; sulfate permease, SulP family D CJA_3145 Na/Pi cotransporter family protein K03324 yjbB; phosphate:Na+ symporter D CJA_0046 NADH dehydrogenase subunit 5 K05559 phaA; multicomponent K+:H+ antiporter subunit A D CJA_0047 pH adaptation potassium efflux system C transmembrane protein K05560 phaC; multicomponent K+:H+ antiporter subunit C D CJA_0048 PhaD protein K05561 phaD; multicomponent K+:H+ antiporter subunit D D CJA_0049 PhaE protein K05562 phaE; multicomponent K+:H+ antiporter subunit E D CJA_0050 PhaF protein K05563 phaF; multicomponent K+:H+ antiporter subunit F D CJA_0051 pH adaptation potassium efflux system protein G K05564 phaG; multicomponent K+:H+ antiporter subunit G D CJA_3219 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D CJA_2774 putative membrane protein K13936 mdcF; malonate transporter and related proteins D CJA_2111 Auxin Efflux Carrier superfamily K24180 mleP; malate permease and related proteins D CJA_1598 Auxin Efflux Carrier superfamily K24180 mleP; malate permease and related proteins D CJA_0379 probable homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D CJA_1000 membrane protein, PerM family K03548 perM; putative permease D CJA_0966 nodulin 21-like protein K22736 VIT; vacuolar iron transporter family protein D CJA_0630 putative membrane protein K05595 marC; multiple antibiotic resistance protein D CJA_2930 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D CJA_1975 Uncharacterized protein family UPF0016 family K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D CJA_1845 pbrT; PbrT protein K07243 FTR; high-affinity iron transporter D CJA_3508 putative membrane protein K07243 FTR; high-affinity iron transporter D CJA_0475 putative tonB2 protein K03832 tonB; periplasmic protein TonB D CJA_0982 TonB2 K03832 tonB; periplasmic protein TonB D CJA_1301 uvs044; Uvs044 K03832 tonB; periplasmic protein TonB D CJA_2327 tonB-2; tonB protein K03832 tonB; periplasmic protein TonB D CJA_0082 TonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB D CJA_2684 possible energy transducer TonB, C-terminal region K03832 tonB; periplasmic protein TonB D CJA_0570 TonB2 protein K03832 tonB; periplasmic protein TonB D CJA_0913 TonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB D CJA_3312 TonB family C-terminal domain protein K03832 tonB; periplasmic protein TonB D CJA_1036 outer membrane protein K03640 pal; peptidoglycan-associated lipoprotein D CJA_1034 putative biopolymer transport protein TolA K03646 tolA; colicin import membrane protein D CJA_1035 tolB; tolB protein K03641 tolB; TolB protein D CJA_2758 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D CJA_2757 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D CJA_2756 oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D CJA_1842 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor K15727 czcB; membrane fusion protein, heavy metal efflux system D CJA_3696 cation efflux system protein K15727 czcB; membrane fusion protein, heavy metal efflux system D CJA_1830 heavy metal RND efflux membrane fusion protein, CzcB family K07798 cusB; membrane fusion protein, copper/silver efflux system D CJA_1394 HlyD-family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D CJA_0275 putative toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D CJA_1515 putative membrane-fusion protein K13408 cvaA; membrane fusion protein D CJA_3605 putative toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D CJA_1475 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2370 RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2483 acrE; efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_0373 HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D CJA_2319 HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D CJA_2534 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D CJA_0622 epsG; EpsG K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CJA_3422 putative polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CJA_3423 polysaccharide chain length determinant protein K25590 epsF; protein tyrosine kinase modulator D CJA_0623 putative chain length determinant protein EpsF K25590 epsF; protein tyrosine kinase modulator D CJA_1155 ferrous iron transport protein K04758 feoA; ferrous iron transport protein A D CJA_1154 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CJA_2064 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D CJA_0296 Uncharacterized membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D CJA_2274 mgtC; Mg(2+) transport ATPase K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D CJA_0550 Transthyretin-like protein precursor K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D CJA_0035 MltA-interacting protein MipA superfamily K07274 mipA; MipA family protein D CJA_0305 hypothetical protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:cja02044] D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein D CJA_1393 toxin secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D CJA_1394 HlyD-family secretion protein K12542 lapC; membrane fusion protein, adhesin transport system D CJA_1392 probable agglutination protein K12543 lapE; outer membrane protein, adhesin transport system D CJA_0275 putative toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D CJA_1515 putative membrane-fusion protein K13408 cvaA; membrane fusion protein D CJA_3605 putative toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D CJA_1516 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0274 putative toxin secretion ABC transporter, ATP-binding subunit/permease protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_0262 ABC transporter, ATP-binding protein K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_3604 putative toxin transporter K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D CJA_1063 gspA; general secretion pathway protein a K02450 gspA; general secretion pathway protein A D CJA_1064 hypothetical protein K02451 gspB; general secretion pathway protein B D CJA_3333 gspC; General secretion pathway protein C K02452 gspC; general secretion pathway protein C D CJA_3332 gspD; General secretion pathway protein D K02453 gspD; general secretion pathway protein D D CJA_0483 type IV pilus biogenesis protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CJA_3331 gspE; General secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CJA_3330 gspF; General secretion pathway protein F K02455 gspF; general secretion pathway protein F D CJA_3329 gspG; General secretion pathway protein G K02456 gspG; general secretion pathway protein G D CJA_3328 gspH; General secretion pathway protein H K02457 gspH; general secretion pathway protein H D CJA_3327 gspI; General secretion pathway protein I K02458 gspI; general secretion pathway protein I D CJA_3326 gspJ; General secretion pathway protein J K02459 gspJ; general secretion pathway protein J D CJA_3325 gspK; General secretion pathway protein K K02460 gspK; general secretion pathway protein K D CJA_3324 gspL; General secretion pathway protein L K02461 gspL; general secretion pathway protein L D CJA_3323 gspM; General secretion pathway protein M K02462 gspM; general secretion pathway protein M D CJA_3322 hypothetical protein K02463 gspN; general secretion pathway protein N D CJA_2732 pilD; type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CJA_2728 pilA; Fimbrial protein precursor (Pilin) K02650 pilA; type IV pilus assembly protein PilA D CJA_2729 pilin K02650 pilA; type IV pilus assembly protein PilA D CJA_1892 P(-)rp(+) fimbrial protein K02650 pilA; type IV pilus assembly protein PilA D CJA_2730 pilB; PilB protein K02652 pilB; type IV pilus assembly protein PilB D CJA_2731 pilC; type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC D CJA_3210 type IV pilin K02655 pilE; type IV pilus assembly protein PilE D CJA_1479 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF D CJA_0080 pilG; twitching motility protein PilG - Pseudomonas aeruginosa K02657 pilG; twitching motility two-component system response regulator PilG D CJA_0078 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D CJA_0077 pilI; Protein pilI K02659 pilI; twitching motility protein PilI D CJA_0076 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D CJA_0075 pilK; type IV pili chemotactic methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D CJA_0412 pilM; type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D CJA_0413 pilN; type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D CJA_0414 pilO; pilO K02664 pilO; type IV pilus assembly protein PilO D CJA_0415 pilP; type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP D CJA_0416 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ D CJA_0087 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT D CJA_0086 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU D CJA_3212 pilW; type 4 fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW D CJA_3211 putative fimbrial protein K02674 pilY1; type IV pilus assembly protein PilY1 D CJA_1988 pilZ; type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D CJA_2047 PA1822-like protein K27041 fimL; scaffold protein FimL D CJA_3213 fimT; pre-pilin like leader sequence K08084 fimT; type IV fimbrial biogenesis protein FimT D CJA_1748 conserved hypothetical protein K08086 fimV; pilus assembly protein FimV D CJA_2389 msha pilin protein mshc K10926 mshC; MSHA pilin protein MshC D CJA_2388 mshD; MSHA pilin protein MshD K10927 mshD; MSHA pilin protein MshD D CJA_2394 mshE; MSHA biogenesis protein MshE K12276 mshE; MSHA biogenesis protein MshE D CJA_2392 mshG; MSHA biogenesis protein MshG K12278 mshG; MSHA biogenesis protein MshG D CJA_2401 putative MSHA biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI D CJA_2399 putative MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ D CJA_2398 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK D CJA_2397 mshL; MSHA biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL D CJA_2396 mshM; MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM D CJA_2395 putative MSHA biogenesis protein MshN K12284 mshN; MSHA biogenesis protein MshN D CJA_2387 conserved hypothetical protein K12285 mshO; MSHA biogenesis protein MshO D CJA_2386 putative MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP D CJA_2385 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ D CJA_0090 YGGT family protein K02221 yggT; YggT family protein D CJA_2120 comEA; integral membrane protein K02237 comEA; competence protein ComEA D CJA_1778 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D CJA_2144 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CJA_1729 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CJA_2071 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D CJA_1713 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CJA_1715 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CJA_1716 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CJA_1724 fliN; flagellar protein K02417 fliN; flagellar motor switch protein FliN D CJA_1725 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D CJA_1726 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP D CJA_1727 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CJA_1728 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CJA_1233 TraG/TraD family K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D CJA_1438 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D CJA_1645 ppkA; serine/threonine protein kinase PpkA K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D CJA_1286 fimC; type 1 pilus chaperone FimC K07346 fimC; fimbrial chaperone protein D CJA_1287 fimD; type 1 pili usher protein FimD K07347 fimD; outer membrane usher protein D CJA_1284 Spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1285 putative type 1 pili pilus subunit K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1288 putative type 1 pili tip component K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_2919 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CJA_3557 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D CJA_1458 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CJA_0686 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CJA_1459 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CJA_2670 putative preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG D CJA_0719 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CJA_1685 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CJA_3500 ftsY; signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor D CJA_1660 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CJA_3823 inner membrane protein, 60 kDa K03217 yidC; YidC/Oxa1 family membrane protein insertase D CJA_0485 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0743 twin arginine-targeting protein translocase, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA D CJA_0489 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0742 TatB K03117 tatB; sec-independent protein translocase protein TatB D CJA_0488 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CJA_0741 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:cja02042] D CJA_1291 uvs045; Uvs045 K03699 tlyC; magnesium and cobalt exporter, CNNM family D CJA_1347 hyl84; hyaluronidase, putative, hyl84A K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 02022 Two-component system [BR:cja02022] D CJA_0149 phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CJA_0150 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CJA_0781 phoQ; Sensory transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CJA_0782 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D CJA_0037 rstA; response regulator (activator) in two-component regulatory system with RstB (OmpR family) K07661 rstA; two-component system, OmpR family, response regulator RstA D CJA_1802 abfS; abfS arabinofuranosidase two component system sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CJA_1803 abfR; abfR arabinofuranosidase two component system response regulator K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CJA_1407 creC; two-component sensor CreC K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CJA_1406 two-component response regulator CreB K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D CJA_2845 baeS; Sensory transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CJA_2846 baeR; DNA-binding response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D CJA_1856 kdpD; two-component sensor KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CJA_1855 kdpE; DNA-binding response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CJA_0038 putative two-component regulatory system, sensor kinase protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CJA_3510 probable two-component sensor K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CJA_3511 Response regulator receiver domain protein K02483 K02483; two-component system, OmpR family, response regulator D CJA_0139 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D CJA_3177 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CJA_2579 gacS; GacS K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CJA_1785 gacA; GacA K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D CJA_1088 two-component system sensor protein K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3] D CJA_1087 DNA-binding response regulator, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR D CJA_0250 algZ; AlgZ K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3] D CJA_0249 algR; alginate biosynthesis regulatory protein AlgR K08083 algR; two-component system, LytTR family, response regulator AlgR D CJA_3536 conserved hypothetical protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CJA_3537 ntrC; nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D CJA_0389 galR two-component system response regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D CJA_3060 mopR; MopR K07714 atoC; two-component system, NtrC family, response regulator AtoC D CJA_3208 pilS; sensor kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CJA_3209 pilR; PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D CJA_3399 prsR; putative PEP-CTERM system response regulator K02481 flgR; two-component system, NtrC family, response regulator D CJA_2945 cheA-1; chemotaxis sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2138 cheA; histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2947 cheY-1; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2140 CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_1901 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2281 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2137 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_2940 cheB-1; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_1934 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CJA_0074 pilL; type IV pili sensor histidine kinase/response regulator PilL K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D CJA_0080 pilG; twitching motility protein PilG - Pseudomonas aeruginosa K02657 pilG; twitching motility two-component system response regulator PilG D CJA_0078 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D CJA_0073 cheB; protein-glutamate methylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D CJA_1708 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D CJA_1709 fleR; transcriptional activator K10943 flrC; two-component system, response regulator FlrC D CJA_0908 sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D CJA_0907 DNA-binding response regulator K15012 regA; two-component system, response regulator RegA D CJA_1720 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D CJA_1719 response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D CJA_2640 putative response regulator K20977 hsbR; two-component system, HptB-dependent secretion and biofilm response regulator D CJA_0359 mmoS; MmoS K20972 retS; two-component system, sensor histidine kinase RetS D CJA_1733 Response regulator receiver domain protein K20972 retS; two-component system, sensor histidine kinase RetS D CJA_1190 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D CJA_0253 Response regulator receiver domain protein K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:cja02035] D CJA_2945 cheA-1; chemotaxis sensor histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2138 cheA; histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CJA_2944 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2132 CheW K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2133 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CJA_2060 conserved hypothetical protein K03410 cheC; chemotaxis protein CheC D CJA_2941 putative cheB, glutamate methylesterase K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D CJA_1933 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_2942 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_1188 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CJA_2137 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_2940 cheB-1; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CJA_2947 cheY-1; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2140 CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_1901 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2281 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CJA_2139 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D CJA_1934 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CJA_0801 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_0182 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1187 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_1382 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2086 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2636 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2948 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2955 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3469 product exhibits features of a methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_3538 Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CJA_2078 aer-2; aerotaxis receptor Aer-2 K03776 aer; aerotaxis receptor D CJA_1715 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CJA_1716 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CJA_1717 putative flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D CJA_1725 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ D CJA_1726 fliP; Flagellar biosynthetic protein fliP K02419 fliP; flagellar biosynthesis protein FliP D CJA_1727 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CJA_1728 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CJA_2144 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CJA_1729 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CJA_1714 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CJA_1723 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CJA_1724 fliN; flagellar protein K02417 fliN; flagellar motor switch protein FliN D CJA_1713 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CJA_1924 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI D CJA_1935 putative flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CJA_1925 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH D CJA_1722 Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CJA_0165 Flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CJA_1712 fliE; flagellar hook-basal body complex protein (FliE) K02408 fliE; flagellar hook-basal body complex protein FliE D CJA_1721 putative flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D CJA_1931 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CJA_1930 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CJA_1929 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D CJA_1927 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D CJA_1926 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CJA_1923 acm73B; endo-beta-N-acetylglucosaminidase, putative, acm73B K02395 flgJ; peptidoglycan hydrolase FlgJ D CJA_1928 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D CJA_1922 flgK; flagellar hook-associated protein 1 FlgK K02396 flgK; flagellar hook-associated protein 1 D CJA_1921 flgL; flagellar hook-associated protein type 3 FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D CJA_1937 FlgN protein superfamily K02399 flgN; flagellar biosynthesis protein FlgN D CJA_2588 putative sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY D CJA_1917 flaA; flagellin K02406 fliC; flagellin D CJA_1919 flagellin K02406 fliC; flagellin D CJA_1916 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CJA_1701 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CJA_1703 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CJA_1702 conserved hypothetical protein K02423 fliT; flagellar protein FliT D CJA_1920 hypothetical protein K02423 fliT; flagellar protein FliT D CJA_2141 FliA K02405 fliA; RNA polymerase sigma factor FliA D CJA_2136 transporter, MotA/TolQ/ExbB proton channel family K02556 motA; chemotaxis protein MotA D CJA_1170 motA1; chemotaxis motA protein K02556 motA; chemotaxis protein MotA D CJA_2135 hypothetical protein K02557 motB; chemotaxis protein MotB D CJA_1171 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D CJA_1708 fleS; two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D CJA_1709 fleR; transcriptional activator K10943 flrC; two-component system, response regulator FlrC D CJA_1936 putative negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CJA_1918 FlaG K06603 flaG; flagellar protein FlaG D CJA_2143 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D CJA_2142 fleN; flagellar number regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG D CJA_0080 pilG; twitching motility protein PilG - Pseudomonas aeruginosa K02657 pilG; twitching motility two-component system response regulator PilG D CJA_0078 pilH; twitching motility protein PilH K02658 pilH; twitching motility two-component system response regulator PilH D CJA_0077 pilI; Protein pilI K02659 pilI; twitching motility protein PilI D CJA_0076 pilJ; twitching motility protein PilJ K02660 pilJ; twitching motility protein PilJ D CJA_0075 pilK; type IV pili chemotactic methyltransferase PilK K02661 pilK; type IV pilus assembly protein PilK D CJA_0074 pilL; type IV pili sensor histidine kinase/response regulator PilL K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) D CJA_3209 pilR; PilR K02667 pilR; two-component system, NtrC family, response regulator PilR D CJA_3208 pilS; sensor kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] D CJA_0087 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT D CJA_0086 pilU; twitching motility protein PilU K02670 pilU; twitching motility protein PilU D CJA_0073 cheB; protein-glutamate methylesterase CheB K06597 chpB; chemosensory pili system protein ChpB (putative protein-glutamate methylesterase) D CJA_0072 conserved hypothetical protein K06598 chpC; chemosensory pili system protein ChpC D CJA_2728 pilA; Fimbrial protein precursor (Pilin) K02650 pilA; type IV pilus assembly protein PilA D CJA_2729 pilin K02650 pilA; type IV pilus assembly protein PilA D CJA_1892 P(-)rp(+) fimbrial protein K02650 pilA; type IV pilus assembly protein PilA D CJA_2730 pilB; PilB protein K02652 pilB; type IV pilus assembly protein PilB D CJA_2731 pilC; type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC D CJA_2732 pilD; type IV pilus prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CJA_1479 pilF; type IV pilus biogenesis protein PilF K02656 pilF; type IV pilus assembly protein PilF D CJA_0416 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ D CJA_0415 pilP; type IV pilus biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP D CJA_0414 pilO; pilO K02664 pilO; type IV pilus assembly protein PilO D CJA_0413 pilN; type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D CJA_0412 pilM; type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D CJA_1988 pilZ; type 4 fimbrial biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D CJA_3212 pilW; type 4 fimbrial biogenesis protein PilW K02672 pilW; type IV pilus assembly protein PilW D CJA_3211 putative fimbrial protein K02674 pilY1; type IV pilus assembly protein PilY1 D CJA_3210 type IV pilin K02655 pilE; type IV pilus assembly protein PilE D CJA_1286 fimC; type 1 pilus chaperone FimC K07346 fimC; fimbrial chaperone protein D CJA_1287 fimD; type 1 pili usher protein FimD K07347 fimD; outer membrane usher protein D CJA_1284 Spore Coat Protein U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1285 putative type 1 pili pilus subunit K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D CJA_1288 putative type 1 pili tip component K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:cja04812] D CJA_2817 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CJA_2923 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CJA_2925 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CJA_1318 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CJA_1319 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CJA_1320 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CJA_3818 soj; chromosome partitioning protein Soj K03496 parA; chromosome partitioning protein D CJA_2134 ParA family protein K03496 parA; chromosome partitioning protein D CJA_0144 probable partition-related protein K03496 parA; chromosome partitioning protein D CJA_0368 ATPase, ParA family K03496 parA; chromosome partitioning protein D CJA_1579 phage-related regulatory protein cII K03496 parA; chromosome partitioning protein D CJA_3817 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:cja04147] D CJA_1760 putative Hsp90 protein K04079 HSP90A; molecular chaperone HtpG D CJA_2225 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CJA_1353 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CJA_0211 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CJA_1354 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CJA_1792 peptidyl-prolyl cis-trans isomerase A (PPIaseA) (Rotamase A) (Cyclophilin A) K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_2020 peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CJA_1067 probable peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D CJA_2646 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CJA_3347 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CJA_1348 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CJA_2000 gnl; gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_0344 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D CJA_2104 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CJA_0684 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_0697 translation elongation factor Tu K02358 tuf; elongation factor Tu D CJA_1976 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CJA_1075 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CJA_0206 ahcY; adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D CJA_2084 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CJA_0251 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CJA_2635 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CJA_0183 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CJA_2204 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CJA_1885 gbe13A; 1,4-alpha-glucan branching enzyme, putative, gbe13A K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CJA_1644 putative glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CJA_3534 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CJA_1906 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CJA_2278 4a-hydroxytetrahydrobiopterin dehydratase (PCD) K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D CJA_1403 alkaline phosphatase III K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CJA_0232 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CJA_2747 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CJA_1507 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_3573 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CJA_2605 etfA; electron transfer flavoprotein FAD-binding domain K03522 fixB; electron transfer flavoprotein alpha subunit D CJA_1350 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CJA_2671 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CJA_0185 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:cja02048] D CJA_2452 cas1; CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D CJA_2451 cas2; CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D CJA_2457 cas3; CRISPR-associated helicase Cas3 domain protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D CJA_2453 cas4; CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D CJA_2455 csd1; CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D CJA_2454 csd2; CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2 D CJA_2456 CRISPR-associated protein Cas5, Dvulg subtype K19119 cas5d; CRISPR-associated protein Cas5d D CJA_0639 type I restriction-modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D CJA_3632 HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D CJA_3638 hsdS-1; type I restriction system specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D CJA_0636 type I restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D CJA_3640 type I restriction-modification system specificity subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D CJA_0638 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D CJA_1582 res; type III restriction system endonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5] D CJA_3651 putative restriction endonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5] D CJA_1580 hypothetical protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CJA_3649 possible DNA methylase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CJA_1581 mod; type III restriction-modification system methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CJA_0809 conserved hypothetical protein K19048 symE; toxic protein SymE D CJA_2496 conserved hypothetical protein K19048 symE; toxic protein SymE D CJA_2510 hypothetical protein K19048 symE; toxic protein SymE D CJA_2979 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D CJA_1013 addiction module toxin, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-] D CJA_2977 prevent-host-death family protein K19159 yefM; antitoxin YefM D CJA_1012 prevent-host-death family protein K19159 yefM; antitoxin YefM D CJA_3701 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_1541 Conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_3740 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_2546 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_0201 conserved hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CJA_3183 ccdA; CcdB antidote CcdA K19164 ccdA; antitoxin CcdA D CJA_3725 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4 D CJA_0820 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-] D CJA_3612 Plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1 D CJA_0821 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D CJA_3613 helix-turn-helix domain protein K21498 higA-1; antitoxin HigA-1 D CJA_3607 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D CJA_1576 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D CJA_3608 possible virulence-associated protein K18829 mvpT; antitoxin VapB D CJA_2923 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CJA_2817 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CJA_3132 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CJA_2903 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CJA_1379 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CJA_2215 TPR repeat family protein K09159 cptB; antitoxin CptB D CJA_1466 cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:cja04090] C 01504 Antimicrobial resistance genes [BR:cja01504] D CJA_0981 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1 D CJA_0980 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CJA_3110 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CJA_0781 phoQ; Sensory transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CJA_0782 phoP; DNA-binding response regulator K07660 phoP; two-component system, OmpR family, response regulator PhoP D CJA_1475 acrA; multidrug resistance protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2370 RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_2483 acrE; efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D CJA_1474 acrB; AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2369 RND transporter, Hydrophobe/Amphiphile Efflux family K18138 acrB; multidrug efflux pump D CJA_2482 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D CJA_2025 hmrR2; MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1837 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1624 hmrR; heavy metal regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_2913 opmH; outer membrane efflux protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:cja00536] D CJA_1347 hyl84; hyaluronidase, putative, hyl84A K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cja00537] D CJA_1403 alkaline phosphatase III K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CJA_1999 tre37B; trehalase, putative, tre37B K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D CJA_0284 tre37A; trehalase, putative, tre37A K01194 TREH; alpha,alpha-trehalase [EC:3.2.1.28] D CJA_1347 hyl84; hyaluronidase, putative, hyl84A K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:cja03100] D CJA_3862 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3890 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3884 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3903 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CJA_3933 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3935 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_4146 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3918 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CJA_3937 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CJA_3932 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CJA_3944 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CJA_3923 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CJA_3857 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CJA_3913 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CJA_3915 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CJA_3867 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3914 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3916 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CJA_3936 tRNA-His K14226 tRNA-His; tRNA His D CJA_3861 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3889 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3883 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CJA_3912 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_3938 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4133 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_3924 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4119 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CJA_4122 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CJA_4123 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CJA_3854 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3872 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3844 tRNA-Met K14230 tRNA-Met; tRNA Met D CJA_3849 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CJA_3894 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_3934 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_4117 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CJA_3902 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3919 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3917 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CJA_3865 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CJA_3868 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CJA_3870 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CJA_3866 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CJA_3922 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_3931 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_3945 tRNA-Val K14237 tRNA-Val; tRNA Val D CJA_3859 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3881 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3888 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CJA_3863 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3885 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3891 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CJA_3864 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3886 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3892 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CJA_3895 10Sa RNA (tmRNA) K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CJA_0168 Short-chain alcohol dehydrogenase family protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D CJA_1409 oxidoreductase, aldo/keto reductase family K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D CJA_3101 oxidoreductase, GMC family K26059 gtd1; glucoside 3-dehydrogenase (cytochrome c) catalytic subunit [EC:1.1.2.11] D CJA_3659 hydrophobic compound transport factor K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D CJA_2304 putative polyketide synthase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D CJA_1512 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55] D CJA_2608 etf-QO; electrotransfer ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D CJA_1342 alcohol dehydrogenase, zinc-containing K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D CJA_2428 Flavodoxin-like fold subfamily K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D CJA_0376 ahpF; AhpF K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D CJA_2043 protein-methionine-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CJA_2029 possible msrA, pms peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D CJA_2372 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CJA_1658 bcp; Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CJA_2443 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CJA_2352 antioxidant protein LsfA K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CJA_0375 ahpC; AhpC K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D CJA_3611 Protein yhhW K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CJA_2429 pirin K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CJA_1864 conserved hypothetical protein K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D CJA_2027 multicopper oxidase K22348 moxA; manganese oxidase [EC:1.16.3.3] D CJA_2604 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D CJA_2283 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D CJA_1891 glutaredoxin NrdH-related protein K18917 mrx1; mycoredoxin [EC:1.20.4.3] D CJA_2220 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D CJA_2147 cfa1; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CJA_0304 putative secreted protein K24288 meT1; MMP 1-O-methyltransferase [EC:2.1.1.365] D CJA_2487 nodulation protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D CJA_2755 hypothetical protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D CJA_3760 putative arylamine N-acetyltransferase K00675 nhoA; N-hydroxyarylamine O-acetyltransferase [EC:2.3.1.118] D CJA_1635 cutE; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D CJA_2408 glutaminyl-peptide cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D CJA_2565 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D CJA_1176 transglutaminase-like domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D CJA_2566 arginine-tRNA-protein transferase-related protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D CJA_3248 agd31B; alpha-glucosidase, putative, adg31B K18820 agd31B; oligosaccharide 4-alpha-D-glucosyltransferase [EC:2.4.1.161] D CJA_0242 unk1; conserved domain protein K16212 mgp; 4-O-beta-D-mannosyl-D-glucose phosphorylase [EC:2.4.1.281] D CJA_0849 cgs94A; cyclic beta-1,2-glucan synthetase, putative, cgs94A K18786 E2.4.1.321; cellobionic acid phosphorylase [EC:2.4.1.321] D CJA_2668 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D CJA_1649 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D CJA_0467 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CJA_3321 putative membrane protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CJA_1148 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CJA_0500 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D CJA_3185 putative maturase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D CJA_2613 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D CJA_3164 sialic acid-specific 9-O-acetylesterase K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53] D CJA_3554 hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D CJA_0832 Cip2 K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117] D CJA_0831 Cellulose or protein binding domain K25010 GE; (4-O-methyl)-D-glucuronate---lignin esterase [EC:3.1.1.117] D CJA_3598 estA1; carboxylesterase type B K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-] D CJA_0111 4-hydroxybenzoyl-CoA thioesterase domain protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CJA_3488 thioesterase family protein domain protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CJA_0628 thioesterase family protein domain protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CJA_1796 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D CJA_1955 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D CJA_1897 response regulator K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D CJA_3357 HD domain protein K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D CJA_1986 deoxyribonuclease, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CJA_1183 Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CJA_0214 glu81A; glucan endo-1,3-beta-glucanase, putative, glu81A K01180 E3.2.1.6; endo-1,3(4)-beta-glucanase [EC:3.2.1.6] D CJA_2888 xyn10D; endo-1,4-beta-xylanase, xyn10D K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D CJA_2471 xyn10A; endo-1,4-beta-xylanase, xyn10A K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D CJA_3066 xyn10C; endo-beta-1,4-xylanase, xyn10C K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D CJA_3280 xyn10B; endo-1,4-beta-xylanase, xyn10B K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D CJA_3762 xyn11B; endo-1,4-beta-xylanase, xyn11B K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8] D CJA_0491 gal53A-1; arabinogalactan endo-1,4-beta-galactosidase, putative, gal53A K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D CJA_0492 gal53B; arabinogalactan endo-1,4-beta-galactosidase, putative, gal53B K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D CJA_0497 gal53A-2; Arabinogalactan endo-1,4-beta-galactosidase gal53A K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D CJA_0805 arb43A; arabinanase and alpha-L-arabinofuranosidase, arb43A K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D CJA_0816 gly43C; beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43C K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D CJA_0799 gly43E; beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43E K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99] D CJA_0735 amy13E; alpha-amylase, putative, amy13E K21575 susA; neopullulanase [EC:3.2.1.135] D CJA_3279 xyn5A; endo-1,4-beta-xylanase, putative, xyn5A K15924 xynC; glucuronoarabinoxylan endo-1,4-beta-xylanase [EC:3.2.1.136] D CJA_2887 gla67A; alpha-glucuronidase, gla67A K01235 aguA; alpha-glucuronidase [EC:3.2.1.139] D CJA_2477 gly74A; endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A K18578 CEL74A; xyloglucan-specific exo-beta-1,4-glucanase [EC:3.2.1.155] D CJA_0170 urh105A; unsaturated rhamnogalacturonyl hydrolase, putative, urh105A K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] D CJA_2706 xyl31A; alpha-xylosidase, putative, xyl31A K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177] D CJA_0068 hypothetical protein K27194 mmpH; MMP endo-(1,4)-3-O-methyl-alpha-D-mannosidase [EC:3.2.1.221] D CJA_3704 glu16C; beta glucanase, putative, glu16C K16559 exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-] D CJA_3706 glu16G; beta glucanse, putative, glu16G K16559 exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-] D CJA_0348 ndeD; N-acyl-D-amino acid deacylase family protein K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D CJA_3582 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CJA_1862 penicillin amidase family protein K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D CJA_3763 xyn11A; endo-1,4-beta-xylanase, esterase, xyn11A K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D CJA_0540 hydroxydechloroatrazine ethylaminohydrolase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32] D CJA_1671 septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D CJA_2162 MoxR-like protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D CJA_1178 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D CJA_0378 Alpha/Beta hydrolase family of unknown function (DUF1234) family K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D CJA_0174 dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D CJA_3087 YjeF family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D CJA_3559 rgl11A; rhamnogalacturonan lyase, rgl11A K18197 yesW; rhamnogalacturonan endolyase [EC:4.2.2.23] D CJA_0243 unk2; Unk2 K16213 cbe; cellobiose epimerase [EC:5.1.3.11] D CJA_0069 peptidyl-prolyl cis-trans isomerase, FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D CJA_2964 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D CJA_1005 Electron transport complex protein rnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D CJA_1006 Electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D CJA_1007 Electron transport complex protein rnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D CJA_1765 nqrA; NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D CJA_1766 nqrB; NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D CJA_1767 nqrC; NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D CJA_1768 nqrD; NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D CJA_1769 nqrE; NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D CJA_1770 nqrF; NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D CJA_2628 cation-transporting P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D CJA_0052 cadA-1; cadmium translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D CJA_0395 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D CJA_3100 conserved hypothetical protein K26060 gtd2; glucoside 3-dehydrogenase (cytochrome c) hitch-hiker subunit C 99982 Energy metabolism D CJA_2357 fdxA; 7-Fe ferredoxin K05524 fdxA; ferredoxin D CJA_1004 rnfE K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D CJA_1003 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D CJA_1008 RnfA-related protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D CJA_2404 flavodoxin K03840 fldB; flavodoxin II D CJA_1806 flavodoxin K03839 fldA; flavodoxin I D CJA_1279 flavodoxin K03839 fldA; flavodoxin I D CJA_2606 electron transfer flavoprotein beta subunit K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D CJA_0972 putative sulfate transporter K06203 cysZ; CysZ protein D CJA_0935 glyoxylase I family protein K08234 yaeR; glyoxylase I family protein D CJA_0178 glyoxylase family protein K08234 yaeR; glyoxylase I family protein D CJA_0088 conserved hypothetical protein TIGR00044 K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D CJA_1639 putative membrane protein K07027 K07027; glycosyltransferase 2 family protein D CJA_0614 gt25A; glycosyl transferase, putative, gt25A K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D CJA_3383 hemY protein K02498 hemY; HemY protein D CJA_3645 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D CJA_3644 conserved hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D CJA_3393 conserved hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK C 99988 Secondary metabolism D CJA_2430 NAD(P)H:quinone oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D CJA_3610 DoxD-like family protein K15977 K15977; putative oxidoreductase D CJA_1044 acetyltransferase, GNAT family K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D CJA_1762 cold-shock domain family protein K03704 cspA; cold shock protein D CJA_0298 cold-shock domain family protein K03704 cspA; cold shock protein D CJA_2195 cold shock protein-related protein K03704 cspA; cold shock protein D CJA_2153 'Cold-shock' DNA-binding domain protein K03704 cspA; cold shock protein D CJA_2570 cspD; cold-shock protein CspD K03704 cspA; cold shock protein D CJA_0162 algQ; transcriptional regulator AlgQ K07740 rsd; regulator of sigma D D CJA_3390 Nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D CJA_3392 Nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D CJA_3169 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D CJA_2569 ATP-dependent Clp protease adaptor protein clpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D CJA_2007 tig; trigger factor K03545 tig; trigger factor D CJA_3362 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D CJA_3394 Mg chelatase homolog K07391 comM; magnesium chelatase family protein D CJA_0985 SM-20 domain protein K07394 K07394; SM-20-related protein D CJA_1001 conserved hypothetical protein K07395 K07395; putative proteasome-type protease D CJA_2658 OsmC/Ohr family protein K07397 yhfA; putative redox protein D CJA_1890 possible hydrolase K07397 yhfA; putative redox protein D CJA_2541 yhgI protein K07400 nfuA; Fe/S biogenesis protein NfuA D CJA_0445 Selenoprotein W-related family K07401 K07401; selenoprotein W-related protein D CJA_0548 putative xanthine dehydrogenase accessory factor XdhC K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D CJA_2651 MGMT family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D CJA_3731 conserved hypothetical protein K07454 K07454; putative restriction endonuclease D CJA_3522 DNA repair protein RadC K03630 radC; DNA repair protein RadC D CJA_2189 RmuC domain protein family K09760 rmuC; DNA recombination protein RmuC D CJA_3730 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D CJA_0926 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease D CJA_1650 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease D CJA_3585 smf; smf protein K04096 smf; DNA processing protein D CJA_2554 ATPase, AAA family domain protein K07478 ycaJ; putative ATPase D CJA_0334 IS3 family transposase, orfA K07483 K07483; transposase D CJA_0265 ISCja1, transposase orfA K07483 K07483; transposase D CJA_3793 ISCja1, transposase orfA K07483 K07483; transposase D CJA_3786 ISCja1, transposase orfA K07483 K07483; transposase D CJA_3735 ISCja1, transposase orfA K07483 K07483; transposase D CJA_1255 ISCja1, transposase orfA K07483 K07483; transposase D CJA_1428 transposase K07483 K07483; transposase D CJA_2622 IS66 family element, transposase K07484 K07484; transposase D CJA_1312 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_1313 IS66 family element, transposase K07484 K07484; transposase D CJA_2095 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_2097 IS66 family element, transposase K07484 K07484; transposase D CJA_2098 IS66 family element, transposase K07484 K07484; transposase D CJA_2099 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_0131 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_0132 IS66 family element, transposase K07484 K07484; transposase D CJA_0336 IS66 family element, transposase K07484 K07484; transposase D CJA_0337 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_1252 hypothetical protein K07484 K07484; transposase D CJA_1254 IS66 family element, transposase K07484 K07484; transposase D CJA_1260 IS66 family element, transposase K07484 K07484; transposase D CJA_1261 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_2621 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_2856 IS66 family element, transposase K07484 K07484; transposase D CJA_2862 IS66 family element, transposase K07484 K07484; transposase D CJA_2863 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_2951 IS66 family element, transposase K07484 K07484; transposase D CJA_3782 IS66 family element, Orf2 protein K07484 K07484; transposase D CJA_3783 IS66 family element, transposase K07484 K07484; transposase D CJA_2499 putative protein encoding reversible inactivation of extracellular polysaccharide production K07486 K07486; transposase D CJA_0823 transposase K07497 K07497; putative transposase D CJA_0555 transposase K07497 K07497; putative transposase D CJA_0822 transposase K07497 K07497; putative transposase D CJA_0556 transposase K07497 K07497; putative transposase D CJA_1421 IS3 family element, transposase orfB K07497 K07497; putative transposase D CJA_1427 transposase K07497 K07497; putative transposase D CJA_0128 Integrase core domain protein K07497 K07497; putative transposase D CJA_0335 IS3 family transposase, orfB K07497 K07497; putative transposase D CJA_1256 ISCja1, transposase orfB K07497 K07497; putative transposase D CJA_0266 ISCja1, transposase orfB K07497 K07497; putative transposase D CJA_2512 Integrase core domain protein K07497 K07497; putative transposase D CJA_3734 ISCja1, transposase orfB K07497 K07497; putative transposase D CJA_3785 ISCja1, transposase orfB K07497 K07497; putative transposase D CJA_3792 ISCja1, transposase orfB K07497 K07497; putative transposase D CJA_3800 tnsB; Tn7-Cj, transposase protein TnsB K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D CJA_1325 phage shock protein K03972 pspE; phage shock protein E D CJA_2440 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CJA_0848 cation symporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D CJA_3013 YicJ-like protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D CJA_1315 transport protein K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D CJA_1051 amino acid permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D CJA_0481 pho4 family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D CJA_2775 sodium/glucose cotransport protein K03307 TC.SSS; solute:Na+ symporter, SSS family D CJA_0241 Na+/glucose symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D CJA_3387 high affinity choline transporter K03307 TC.SSS; solute:Na+ symporter, SSS family C 99978 Cell growth D CJA_1236 ccrB; Site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase D CJA_2562 SpoVR like family protein K06415 spoVR; stage V sporulation protein R D CJA_3552 peptidase, M23/M37 family K22719 envC; murein hydrolase activator C 99993 Cell motility D CJA_0519 TfoX C-terminal domain superfamily K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D CJA_2653 putative AmpE K03807 ampE; AmpE protein D CJA_2014 universal stress protein family K06149 uspA; universal stress protein A D CJA_2593 universal stress protein family K14055 uspE; universal stress protein E D CJA_3664 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein D CJA_2021 HPP family K07168 K07168; CBS domain-containing membrane protein D CJA_1389 phoH; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D CJA_1638 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D CJA_2564 protein kinase K07180 prkA; serine protein kinase D CJA_1793 conserved hypothetical protein K07184 ygiM; SH3 domain protein D CJA_2652 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D CJA_2555 lolA; outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D CJA_0647 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D CJA_2359 vacJ; vacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D CJA_1121 putative outer membrane protein OmpH K06142 hlpA; outer membrane protein D CJA_2219 nlpD; lipoprotein NlpD K06194 nlpD; lipoprotein NlpD D CJA_1414 putative outer membrane protein K07283 ydiY; putative salt-induced outer membrane protein D CJA_0525 AsmA family superfamily K07289 asmA; AsmA protein D CJA_1077 putative membrane protein K07340 ybbJ; inner membrane protein D CJA_3188 HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein D CJA_3616 membrane-fusion protein K01993 ABC-2.TX; HlyD family secretion protein D CJA_0032 membrane fusion efflux protein K02005 ABC.CD.TX; HlyD family secretion protein D CJA_0261 putative ABC transporter permease K02005 ABC.CD.TX; HlyD family secretion protein D CJA_1408 creD; inner membrane protein CreD K06143 creD; inner membrane protein D CJA_2065 CycJ K02197 ccmE; cytochrome c-type biogenesis protein CcmE D CJA_1912 ccmI; cytochrome c-type biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D CJA_1913 Cytochrome c-type biogenesis protein cycL precursor K02200 ccmH; cytochrome c-type biogenesis protein CcmH D CJA_0621 putative GumE protein K13662 gumE; putative polymerase D CJA_1480 putative DNA-binding protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D CJA_2778 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D CJA_1066 bacterioferritin-associated ferredoxin-related protein K02192 bfd; bacterioferritin-associated ferredoxin D CJA_0358 mdoG; periplasmic glucans biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein D CJA_0862 conserved hypothetical protein K06195 apaG; ApaG protein D CJA_1826 copB; hypothetical protein K07233 pcoB; copper resistance protein B D CJA_1548 NnrS protein superfamily K07234 K07234; uncharacterized protein involved in response to NO B B 09194 Poorly characterized C 99996 General function prediction only D CJA_1756 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production D CJA_3125 acm73A; endo-beta-N-acetylglucosaminidase, putative, acm73A K03796 bax; Bax protein D CJA_1078 uvs083; Uvs083 K07001 K07001; NTE family protein D CJA_1741 phospholipase, patatin family K07001 K07001; NTE family protein D CJA_0888 HesB/YadR/YfhF family protein K15724 erpA; iron-sulfur cluster insertion protein D CJA_1471 HesB protein K05997 sufA; Fe-S cluster assembly protein SufA D CJA_1467 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D CJA_1469 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D CJA_2282 probable ribonuclease K07058 K07058; membrane protein D CJA_2648 fsxA; fxsA protein K07113 fxsA; UPF0716 protein FxsA D CJA_1476 Fe-S metabolism associated domain protein K02426 sufE; cysteine desulfuration protein SufE D CJA_1184 uncharacterized protein conserved in bacteria K02426 sufE; cysteine desulfuration protein SufE D CJA_2201 rhodanese-like domain protein K07146 K07146; UPF0176 protein D CJA_2491 conserved hypothetical protein K07153 hflD; high frequency lysogenization protein D CJA_1194 DGPF domain family K04750 phnB; PhnB protein D CJA_0923 uncharacterized conserved protein K03744 lemA; LemA protein D CJA_1330 host factor for lysis of phiX174 infection-related protein K03745 slyX; SlyX protein D CJA_1755 Sporulation related repeat family K03749 dedD; DedD protein D CJA_0419 conserved hypothetical protein K03112 damX; DamX protein D CJA_0231 Predicted membrane protein K08974 K08974; putative membrane protein D CJA_2544 putative membrane protein K08984 yjdF; putative membrane protein D CJA_1562 putative membrane protein K08987 K08987; putative membrane protein D CJA_2766 predicted membrane protein K08989 K08989; putative membrane protein D CJA_3807 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein D CJA_3171 phnA; alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D CJA_1056 putative ankyrin G K06867 K06867; uncharacterized protein D CJA_0267 radical SAM domain protein protein K06871 K06871; uncharacterized protein D CJA_1544 dienelactone hydrolase domain protein K06889 K06889; uncharacterized protein D CJA_3045 hypothetical protein K06903 W; Bacteriophage baseplate protein W D CJA_3677 GPW / gp25 family protein K06903 W; Bacteriophage baseplate protein W D CJA_3054 Phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein D CJA_3670 conserved hypothetical protein K06907 FI; Bacteriophage tail sheath protein D CJA_1900 conserved hypothetical protein K06923 K06923; uncharacterized protein D CJA_1584 rloA; RloA protein K06926 K06926; uncharacterized protein D CJA_1998 conserved hypothetical protein K06938 K06938; uncharacterized protein D CJA_2557 conserved hypothetical protein K06938 K06938; uncharacterized protein D CJA_1893 conserved hypothetical protein K06975 K06975; uncharacterized protein D CJA_2102 Predicted deacylase K06987 K06987; uncharacterized protein D CJA_2904 conserved hypothetical protein K07000 K07000; uncharacterized protein D CJA_0446 putative membrane protein K07003 K07003; uncharacterized protein D CJA_3753 putative transporter K07003 K07003; uncharacterized protein D CJA_1368 putative membrane protein K07014 K07014; uncharacterized protein D CJA_0401 putative membrane protein K07014 K07014; uncharacterized protein D CJA_2789 conserved hypothetical protein K07018 K07018; uncharacterized protein D CJA_3027 conserved hypothetical protein K07032 K07032; uncharacterized protein D CJA_1689 yecA family protein subfamily K07039 K07039; uncharacterized protein D CJA_3626 conserved hypothetical protein K07070 K07070; uncharacterized protein D CJA_1429 conserved hypothetical protein TIGR01777 K07071 K07071; uncharacterized protein D CJA_1146 sodium bicarbonate cotransporter K07086 K07086; uncharacterized protein D CJA_0490 putative membrane protein K07090 K07090; uncharacterized protein D CJA_2423 putative membrane protein K07090 K07090; uncharacterized protein D CJA_1372 putative membrane protein K07090 K07090; uncharacterized protein D CJA_2354 Domain of unknown function domain protein K07090 K07090; uncharacterized protein D CJA_0576 hypothetical integral membrane protein K07090 K07090; uncharacterized protein D CJA_3663 putative membrane protein K07090 K07090; uncharacterized protein D CJA_0844 Tat (twin-arginine translocation) pathway signal sequence domain protein K07093 K07093; uncharacterized protein D CJA_0487 Tat (twin-arginine translocation) pathway signal sequence domain protein K07093 K07093; uncharacterized protein D CJA_1570 Tat (twin-arginine translocation) pathway signal sequence domain protein K07093 K07093; uncharacterized protein D CJA_0580 hpt-1; hypoxanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein D CJA_2346 putative membrane protein K07112 K07112; uncharacterized protein D CJA_0927 LppC putative lipoprotein K07121 K07121; uncharacterized protein D CJA_3757 short-chain dehydrogenase K07124 K07124; uncharacterized protein D CJA_3724 conserved hypothetical protein K07133 K07133; uncharacterized protein D CJA_2665 uncharacterized FAD-dependent dehydrogenase K07137 K07137; uncharacterized protein D CJA_3824 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein D CJA_0766 GatB/Yqey domain superfamily K09117 K09117; uncharacterized protein D CJA_0091 conserved hypothetical protein TIGR00251 K09131 K09131; uncharacterized protein D CJA_0795 conserved hypothetical protein K09158 K09158; uncharacterized protein D CJA_2436 conserved hypothetical protein K09160 K09160; uncharacterized protein D CJA_1978 YaiI/YqxD family protein superfamily K09768 K09768; uncharacterized protein D CJA_1794 YCII-related domain family K09780 K09780; uncharacterized protein D CJA_2563 conserved hypothetical protein K09786 K09786; uncharacterized protein D CJA_2683 putative membrane protein K09790 K09790; uncharacterized protein D CJA_1547 putative membrane protein K09790 K09790; uncharacterized protein D CJA_1358 Tetraacyldisaccharide-1-P 4-kinase K09791 K09791; uncharacterized protein D CJA_0093 Tetraacyldisaccharide-1-P 4-kinase K09791 K09791; uncharacterized protein D CJA_2626 TRAP transporter, DctM-like membrane protein K09792 K09792; uncharacterized protein D CJA_3550 Divergent polysaccharide deacetylase family K09798 K09798; uncharacterized protein D CJA_3360 Protein yfjF K09801 K09801; uncharacterized protein D CJA_3090 conserved hypothetical protein K09807 K09807; uncharacterized protein D CJA_1771 conserved hypothetical protein K05952 K05952; uncharacterized protein D CJA_2751 nucleic acid binding protein K00243 K00243; uncharacterized protein D CJA_1607 putative lipoprotein K09857 K09857; uncharacterized protein D CJA_0191 conserved hypothetical protein K09861 K09861; uncharacterized protein D CJA_2734 Domain of unknown function (DUF329) family K09862 K09862; uncharacterized protein D CJA_0293 yecA family protein K09895 K09895; uncharacterized protein D CJA_2382 conserved hypothetical protein K09898 K09898; uncharacterized protein D CJA_2437 conserved hypothetical protein K09902 K09902; uncharacterized protein D CJA_2791 conserved hypothetical protein K09908 K09908; uncharacterized protein D CJA_2146 conserved hypothetical protein K09912 K09912; uncharacterized protein D CJA_1529 conserved hypothetical protein K09915 K09915; uncharacterized protein D CJA_2171 conserved hypothetical protein K09916 K09916; uncharacterized protein D CJA_3220 hypothetical protein K09918 K09918; uncharacterized protein D CJA_3539 conserved hypothetical protein K09919 K09919; uncharacterized protein D CJA_2907 uvs098; Uvs098 K09920 K09920; uncharacterized protein D CJA_3289 conserved hypothetical protein K09921 K09921; uncharacterized protein D CJA_3374 putative membrane protein K09922 K09922; uncharacterized protein D CJA_2629 conserved hypothetical protein K09926 K09926; uncharacterized protein D CJA_2365 conserved hypothetical protein K09929 K09929; uncharacterized protein D CJA_2366 conserved hypothetical protein K09930 K09930; uncharacterized protein D CJA_3075 conserved hypothetical protein K09937 K09937; uncharacterized protein D CJA_1631 conserved hypothetical protein K09938 K09938; uncharacterized protein D CJA_2538 plasmolipin K09939 K09939; uncharacterized protein D CJA_1010 conserved hypothetical protein K09940 K09940; uncharacterized protein D CJA_2752 hypothetical protein K09941 K09941; uncharacterized protein D CJA_0085 Domain of unknown function (DUF1508) family K09946 K09946; uncharacterized protein D CJA_1167 conserved hypothetical protein K09948 K09948; uncharacterized protein D CJA_3463 Conserved hypothetical protein K09950 K09950; uncharacterized protein D CJA_1327 conserved protein K09954 K09954; uncharacterized protein D CJA_0803 conserved hypothetical protein K09955 K09955; uncharacterized protein D CJA_0013 conserved hypothetical protein K09958 K09958; uncharacterized protein D CJA_2721 conserved hypothetical protein K09967 K09967; uncharacterized protein D CJA_2722 conserved hypothetical protein K09967 K09967; uncharacterized protein D CJA_0598 GumN protein superfamily K09973 K09973; uncharacterized protein D CJA_1338 conserved hypothetical protein K09974 K09974; uncharacterized protein D CJA_2175 conserved hypothetical protein K09977 K09977; uncharacterized protein D CJA_0850 conserved hypothetical protein K09981 K09981; uncharacterized protein D CJA_0285 conserved hypothetical protein K09983 K09983; uncharacterized protein D CJA_1172 conserved hypothetical protein K09983 K09983; uncharacterized protein D CJA_3155 conserved hypothetical protein K09992 K09992; uncharacterized protein D CJA_0482 conserved hypothetical protein TIGR00153 K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 11, 2024