+E Transcription factors KO #

  Transcription Factors - Cellvibrio japonicus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D CJA_3029 transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator D CJA_1634 putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D CJA_0667 LysR substrate binding domain protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D CJA_2446 metR-1; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D CJA_3492 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CJA_3151 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CJA_1945 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D CJA_1147 rbcR; rubisco operon transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D CJA_1201 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family D CJA_1165 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CJA_1495 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CJA_0240 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CJA_3595 putative Fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D CJA_0847 transcriptional regulatory protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D CJA_2253 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator C TetR/AcrR family D CJA_3526 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D CJA_0541 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D CJA_1040 inactive regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CJA_0965 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CJA_1473 transcriptional regulator, TetR family K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon C Lrp/AsnC family D CJA_0023 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CJA_2085 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family C MerR family D CJA_2025 hmrR2; MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1837 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CJA_1624 hmrR; heavy metal regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D CJA_3352 fur; transcriptional regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CJA_3482 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D CJA_2659 cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_3521 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0518 cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_0914 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CJA_2196 anr; Transcriptional activator protein anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D CJA_1465 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D CJA_1549 rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D CJA_3700 arsR; arsenic resistance operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CJA_1374 transcriptional activator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D CJA_0980 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CJA_0677 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CJA_2746 fis; Hin recombinational enhancer binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CJA_0821 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D CJA_0008 transcriptional regulatory protein K15836 fhlA; formate hydrogenlyase transcriptional activator D CJA_0319 modE; MopB-like protein K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D CJA_2203 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CJA_3817 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CJA_3377 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D CJA_0083 Uncharacterized ACR K07735 algH; putative transcriptional regulator D CJA_0393 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D CJA_2699 conserved hypothetical protein TIGR00244 K07738 nrdR; transcriptional repressor NrdR D CJA_2938 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0