+E Transcription factors KO
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Transcription Factors - Cellvibrio japonicus
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D CJA_3029 transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator
D CJA_1634 putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D CJA_0667 LysR substrate binding domain protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D CJA_2446 metR-1; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D CJA_3492 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CJA_3151 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CJA_1945 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D CJA_1147 rbcR; rubisco operon transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D CJA_1201 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
C LacI family
D CJA_1165 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CJA_1495 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CJA_0240 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D CJA_3595 putative Fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D CJA_0847 transcriptional regulatory protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D CJA_2253 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
C TetR/AcrR family
D CJA_3526 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D CJA_0541 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D CJA_1040 inactive regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D CJA_0965 putative transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D CJA_1473 transcriptional regulator, TetR family K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
C Lrp/AsnC family
D CJA_0023 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CJA_2085 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
C MarR family
C MerR family
D CJA_2025 hmrR2; MerR-family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D CJA_1837 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D CJA_1624 hmrR; heavy metal regulator HmrR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D CJA_3352 fur; transcriptional regulator Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CJA_3482 np20; transcriptional regulator np20 K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D CJA_2659 cyclic AMP receptor-like protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CJA_3521 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CJA_0518 cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CJA_0914 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CJA_2196 anr; Transcriptional activator protein anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D CJA_1465 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CJA_1549 rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D CJA_3700 arsR; arsenic resistance operon regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CJA_1374 transcriptional activator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
C Other families
D CJA_0980 conserved hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CJA_0677 biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CJA_2746 fis; Hin recombinational enhancer binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D CJA_0821 conserved hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D CJA_1704 fleQ; regulatory protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D CJA_0008 transcriptional regulatory protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D CJA_0319 modE; MopB-like protein K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D CJA_2203 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D CJA_3817 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CJA_3377 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D CJA_0083 Uncharacterized ACR K07735 algH; putative transcriptional regulator
D CJA_0393 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CJA_2699 conserved hypothetical protein TIGR00244 K07738 nrdR; transcriptional repressor NrdR
D CJA_2938 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0