+F Repair protein KO #

  DNA Repair and Recombination Proteins - Clostridium kluyveri DSM 555

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CKL_0119 ogt; Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CKL_3744 Predicted 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CKL_0461 Predicted 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E CKL_3410 Hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CKL_1144 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CKL_0119 ogt; Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CKL_3767 Phage-related DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CKL_3806 Uracil DNA glycosylase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CKL_3744 Predicted 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CKL_3410 Hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CKL_1412 Hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E CKL_2140 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CKL_3482 ligA1; LigA1 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CKL_0669 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CKL_3571 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A E CKL_3572 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B E CKL_3566 uvrC; UvrC K03703 uvrC; excinuclease ABC subunit C E CKL_1652 UvrABC-related protein, protein C K03703 uvrC; excinuclease ABC subunit C E CKL_3484 pcrA; PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_1468 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_2529 Predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_0604 Predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_1765 Conserved hypothetical protein with LexA domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_0669 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E CKL_3482 ligA1; LigA1 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CKL_0216 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CKL_0217 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CKL_0252 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CKL_1366 Predicted DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CKL_0152 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CKL_1574 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS E CKL_3183 MutS-related protein K07456 mutS2; DNA mismatch repair protein MutS2 E CKL_0555 MutS-related protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CKL_1575 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CKL_1228 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CKL_1229 xseB; XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CKL_3560 dnaE; DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CKL_1426 polC; PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E CKL_0002 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CKL_0893 Conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CKL_3793 DNA polymerase-related protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CKL_4034 DNA polymerase III, epsilon subunit related exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CKL_3827 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CKL_3482 ligA1; LigA1 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CKL_3484 pcrA; PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_1468 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_2529 Predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_0604 Predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_1765 Conserved hypothetical protein with LexA domain K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CKL_3909 ssb3; Ssb3 K03111 ssb; single-strand DNA-binding protein E CKL_4013 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CKL_1147 ssb1; Ssb1 K03111 ssb; single-strand DNA-binding protein E CKL_2314 Predicted DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_4048 predicted DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_1889 Hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_4008 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_3897 Predicted DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_1987 Predicted DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CKL_3294 Predicted DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CKL_3670 Predicted exodeoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CKL_1445 recA; RecA K03553 recA; recombination protein RecA E CKL_3145 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CKL_3144 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CKL_1368 Hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CKL_0121 Predicted exonuclease, sbcC related K03546 sbcC; DNA repair protein SbcC/Rad50 E CKL_4015 SbcCD related DNA repair protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CKL_0122 Predicted exonuclease, sbcD related K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CKL_1445 recA; RecA K03553 recA; recombination protein RecA E CKL_0196 radA; RadA K04485 radA; DNA repair protein RadA/Sms E CKL_0004 recF; RecF K03629 recF; DNA replication and repair protein RecF E CKL_1384 Hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CKL_2761 DNA helicase-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CKL_3659 Predicted transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CKL_2140 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CKL_0917 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CKL_3825 recR; RecR K06187 recR; recombination protein RecR E CKL_1235 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CKL_3145 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CKL_3144 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E CKL_0706 Predicted ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CKL_0996 addB; AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E CKL_2752 Conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E CKL_0121 Predicted exonuclease, sbcC related K03546 sbcC; DNA repair protein SbcC/Rad50 E CKL_4015 SbcCD related DNA repair protein K03546 sbcC; DNA repair protein SbcC/Rad50 E CKL_0122 Predicted exonuclease, sbcD related K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CKL_0007 gyrA1; GyrA1 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CKL_0006 gyrB1; GyrB1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CKL_1415 Hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CKL_0157 hup; Hup K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CKL_0416 Phage-related protein K07455 recT; recombination protein RecT F CKL_1895 Phage-related rekombinase protein K07455 recT; recombination protein RecT F CKL_1992 Phage-related rekombinase protein K07455 recT; recombination protein RecT F CKL_2140 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CKL_0917 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CKL_3825 recR; RecR K06187 recR; recombination protein RecR F CKL_3482 ligA1; LigA1 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CKL_2379 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CKL_3571 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A F CKL_3572 uvrB; UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CKL_3439 dinB; DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CKL_1445 recA; RecA K03553 recA; recombination protein RecA D CKL_1579 lexA; LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CKL_1646 Transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D CKL_1235 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CKL_3909 ssb3; Ssb3 K03111 ssb; single-strand DNA-binding protein D CKL_4013 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CKL_1147 ssb1; Ssb1 K03111 ssb; single-strand DNA-binding protein D CKL_3329 Predicted regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D CKL_1144 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D CKL_1433 Predicted hydrolase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024