+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Cedecea lapagei
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D NCTC11466_04103 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C NCTC11466_00909 era; GTP-binding protein Era K03595 era; GTPase
C NCTC11466_00350 obg; GTP-binding protein obg K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C NCTC11466_03784 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C NCTC11466_00364 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C NCTC11466_03458 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C NCTC11466_04362 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D NCTC11466_01370 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D NCTC11466_03868 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NCTC11466_00258 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NCTC11466_03942 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D NCTC11466_00103 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NCTC11466_00593 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NCTC11466_01795 rsmF; Ribosomal RNA small subunit methyltransferase F K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D NCTC11466_04628 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NCTC11466_03841 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NCTC11466_04124 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NCTC11466_00072 rsmJ; Ribosomal RNA small subunit methyltransferase J K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D NCTC11466_01810 rlmA; Ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D NCTC11466_04085 rlmB_2; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NCTC11466_00356 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D NCTC11466_03112 rlmF; Ribosomal RNA large subunit methyltransferase F K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D NCTC11466_04024 rlmG; Ribosomal RNA large subunit methyltransferase G K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D NCTC11466_03307 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NCTC11466_02975 rlmI; Ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D NCTC11466_00069 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D NCTC11466_02997 rlmL; Ribosomal RNA large subunit methyltransferase L K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D NCTC11466_00704 rlmM; Ribosomal RNA large subunit methyltransferase M K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D NCTC11466_00986 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NCTC11466_00721 rlmD; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NCTC11466_03082 rlmC; 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D NCTC11466_03863 rluA_2; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NCTC11466_01227 rluA_1; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D NCTC11466_01910 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NCTC11466_02820 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D NCTC11466_00882 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NCTC11466_02749 rluE; Ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D NCTC11466_04320 rluF; Ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D NCTC11466_00896 rlmB_1; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
B ribosomal protein modification factors
C NCTC11466_03940 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C NCTC11466_02845 ydaF_2; Putative ribosomal N-acetyltransferase YdaF K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C NCTC11466_03089 lysX; Alpha-aminoadipate--lysW ligase lysX K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C NCTC11466_02512 rimL; Ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C NCTC11466_00868 rimM; 21K K02860 rimM; 16S rRNA processing protein RimM
C NCTC11466_01434 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C NCTC11466_03038 YcaO-like family K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C NCTC11466_00284 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C NCTC11466_01256 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C NCTC11466_02757 Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
C NCTC11466_03156 Cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C NCTC11466_02822 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C NCTC11466_00298 rng; Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C NCTC11466_00590 yqgF; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C NCTC11466_02148 dbpA; ATP-independent RNA helicase dbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C NCTC11466_00372 deaD; Cold-shock DEAD box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C NCTC11466_00899 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
B GTPases
C NCTC11466_00909 era; GTP-binding protein Era K03595 era; GTPase
C NCTC11466_04104 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C NCTC11466_00992 der; GTP-binding protein EngA K03977 engA; GTPase
C NCTC11466_00350 obg; GTP-binding protein obg K03979 obgE; GTPase [EC:3.6.5.-]
C NCTC11466_04092 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C NCTC11466_00264 rimN; t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C NCTC11466_04576 spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C NCTC11466_02097 rsh; GTP pyrophosphokinase rsh K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C NCTC11466_00366 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C NCTC11466_03341 ybcJ; ribosome-associated protein K14761 rlbA; ribosome-associated protein
C NCTC11466_03306 ybeB; ribosome-associated protein K09710 ybeB; ribosome-associated protein
C NCTC11466_03293 ybeY; Probable rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
C NCTC11466_00355 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
C NCTC11466_00058 yibL; Protein of uncharacterised function (DUF2810) K14762 yibL; ribosome-associated protein
C NCTC11466_04150 yjgA; x96 protein K09889 yjgA; ribosome-associated protein
C NCTC11466_02992 rmf; Ribosome modulation factor K03812 rmf; ribosome modulation factor
C NCTC11466_00330 yhbH; ribosome hibernation promoting factor HPF K05808 hpf; ribosome hibernation promoting factor
C NCTC11466_00880 raiA; SpotY K05809 raiA; ribosome-associated inhibitor A
C NCTC11466_01996 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase
C NCTC11466_02809 Uncharacterized ACR, COG1399 K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024