+F Repair protein KO
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DNA Repair and Recombination Proteins - Clostridium ljungdahlii
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CLJU_c17870 methylated-DNA--protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CLJU_c01950 predicted 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E CLJU_c37230 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E CLJU_c39270 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D CLJU_c15020 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLJU_c14320 putative 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLJU_c10140 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CLJU_c17870 methylated-DNA--protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CLJU_c01120 predicted Uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E CLJU_c01720 predicted phage related DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E CLJU_c01950 predicted 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E CLJU_c36310 predicted methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E CLJU_c39270 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E CLJU_c20270 predicted endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E CLJU_c09240 recJ1; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E CLJU_c36970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E CLJU_c33610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E CLJU_c03120 uvrA1; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E CLJU_c14750 uvrA2; predicted excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E CLJU_c03110 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
E CLJU_c03170 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C
E CLJU_c30170 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c21950 predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c14310 predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c28400 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c16530 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c38340 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c36980 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c33610 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E CLJU_c36970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CLJU_c41120 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CLJU_c41110 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CLJU_c40770 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F CLJU_c12530 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F CLJU_c41720 mfd; predicted transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E CLJU_c21240 mutS1; predicted DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E CLJU_c34380 DNA mismatch repair MutS related protein K07456 mutS2; DNA mismatch repair protein MutS2
E CLJU_c15050 MutS related protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E CLJU_c21230 mutL1; predicted DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E CLJU_c11130 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E CLJU_c11140 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E CLJU_c03240 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E CLJU_c30690 polC; DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E CLJU_c00020 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E CLJU_c07890 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E CLJU_c01410 DNA polymerase related protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E CLJU_c19140 predicted exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CLJU_c36230 putative exonuclease with a BRCT domain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CLJU_c36410 predicted DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CLJU_c00850 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E CLJU_c36970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E CLJU_c30170 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c21950 predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c14310 predicted helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c28400 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c16530 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c38340 predicted ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c36980 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CLJU_c10150 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E CLJU_c42780 ssb3; predicted single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E CLJU_c30980 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E CLJU_c02590 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E CLJU_c13280 recA; recombinase RecA K03553 recA; recombination protein RecA
E CLJU_c33830 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E CLJU_c33820 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CLJU_c12550 predicted primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E CLJU_c31640 phage-related protein K03546 sbcC; DNA repair protein SbcC/Rad50
E CLJU_c20320 sbcCD; predicted nuclease sbcCD, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E CLJU_c20310 sbcD; predicted exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E CLJU_c13280 recA; recombinase RecA K03553 recA; recombination protein RecA
E CLJU_c41320 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E CLJU_c00040 recF; predicted DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E CLJU_c12700 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CLJU_c05370 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CLJU_c09240 recJ1; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E CLJU_c08110 recO; predicted DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E CLJU_c00870 recR; predicted recombination protein RecR K06187 recR; recombination protein RecR
E CLJU_c11200 recN; predicted DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E CLJU_c33830 ruvA; Holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E CLJU_c33820 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E CLJU_c33160 predicted ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E CLJU_c06980 addB; predicted ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E CLJU_c31640 phage-related protein K03546 sbcC; DNA repair protein SbcC/Rad50
E CLJU_c20320 sbcCD; predicted nuclease sbcCD, subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E CLJU_c20310 sbcD; predicted exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F CLJU_c00070 gyrA1; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F CLJU_c00060 gyrB1; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F CLJU_c13000 topA1; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F CLJU_c41670 hup; predicted DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F CLJU_c31630 phage-related protein K07455 recT; recombination protein RecT
F CLJU_c09240 recJ1; single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F CLJU_c08110 recO; predicted DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F CLJU_c00870 recR; predicted recombination protein RecR K06187 recR; recombination protein RecR
F CLJU_c36970 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F CLJU_c25260 recQ; predicted ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F CLJU_c03120 uvrA1; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F CLJU_c14750 uvrA2; predicted excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F CLJU_c03110 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D CLJU_c21040 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D CLJU_c13280 recA; recombinase RecA K03553 recA; recombination protein RecA
D CLJU_c21030 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLJU_c36670 predicted transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLJU_c11200 recN; predicted DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CLJU_c10150 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CLJU_c42780 ssb3; predicted single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLJU_c35400 putative regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D CLJU_c15020 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLJU_c14320 putative 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLJU_c10140 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLJU_c06840 predicted ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D CLJU_c13170 putative phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024