+E Transcription factors KO
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Transcription Factors - Clostridium sp. AWRP
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D DMR38_00210 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D DMR38_16395 hypothetical protein K13653 K13653; AraC family transcriptional regulator
D DMR38_15395 helix-turn-helix domain-containing protein K13653 K13653; AraC family transcriptional regulator
C LysR family
C DeoR family
D DMR38_10550 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D DMR38_01140 spoIIID; sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D DMR38_08065 DeoR/GlpR transcriptional regulator K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor
D DMR38_03880 transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D DMR38_00845 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D DMR38_15035 LacI family DNA-binding transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
C GntR family
D DMR38_00535 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D DMR38_12005 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D DMR38_03220 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DMR38_03240 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DMR38_07055 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DMR38_07765 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DMR38_11155 FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DMR38_08860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D DMR38_21410 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D DMR38_13545 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
C Lrp/AsnC family
D DMR38_03205 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DMR38_01700 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DMR38_10785 Lrp/AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
C MerR family
C Fur family
D DMR38_06160 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DMR38_09910 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DMR38_02785 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DMR38_17850 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D DMR38_06845 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D DMR38_05095 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DMR38_12210 cyclic nucleotide-binding domain-containing protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DMR38_15070 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D DMR38_06115 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D DMR38_07925 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DMR38_00825 metalloregulator ArsR/SmtB family transcription factor K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D DMR38_06885 helix-turn-helix domain-containing protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D DMR38_15215 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D DMR38_08185 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D DMR38_16475 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D DMR38_17165 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D DMR38_17175 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D DMR38_19335 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D DMR38_13925 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D DMR38_17185 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D DMR38_10500 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DMR38_06820 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DMR38_09725 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DMR38_13005 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DMR38_19325 BlaI/MecI/CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DMR38_13795 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DMR38_14210 PAS domain-containing protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D DMR38_04385 TrmB family transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D DMR38_20730 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D DMR38_10300 PAS domain S-box protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_10305 PAS domain S-box protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_10325 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_10345 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12055 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12310 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12350 PAS domain S-box protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12390 PAS domain S-box protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12845 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_12855 PAS domain-containing protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_03395 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_11760 AAA family ATPase K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D DMR38_14345 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
D DMR38_10840 PAS domain S-box protein K06714 rocR; arginine utilization regulatory protein
D DMR38_12445 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D DMR38_09830 transporter K02019 modE; molybdate transport system regulatory protein
D DMR38_18565 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D DMR38_06590 codY; GTP-sensing pleiotropic transcriptional regulator CodY K03706 codY; transcriptional pleiotropic repressor
D DMR38_12830 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D DMR38_08725 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D DMR38_09195 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D DMR38_09315 transcriptional regulator K07729 K07729; putative transcriptional regulator
D DMR38_16445 helix-turn-helix domain-containing protein K07729 K07729; putative transcriptional regulator
D DMR38_21480 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
D DMR38_09895 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D DMR38_01405 CopG family transcriptional regulator K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
C Others
D DMR38_05770 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D DMR38_07135 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D DMR38_12880 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D DMR38_16135 metal-sensing transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D DMR38_12630 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D DMR38_00685 AbrB/MazE/SpoVT family DNA-binding domain-containing protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D DMR38_20680 spoVT; stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D DMR38_09285 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DMR38_21620 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DMR38_21630 noc; nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DMR38_04350 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D DMR38_05625 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D DMR38_03790 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D DMR38_13170 tenA; thiaminase II K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D DMR38_20505 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D DMR38_19525 sugar-binding transcriptional regulator K05311 cggR; central glycolytic genes regulator
D DMR38_09050 sugar-binding transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D DMR38_05010 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D DMR38_06245 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D DMR38_04905 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0