+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Clavispora lusitaniae ATCC 42720
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E CLUG_02379 hypothetical protein K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E CLUG_05341 cell division control protein 28 K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E CLUG_01841 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E CLUG_02318 hypothetical protein K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E CLUG_01683 hypothetical protein K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E CLUG_01127 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E CLUG_00492 hypothetical protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
E CLUG_02945 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E CLUG_05488 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E CLUG_02075 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E CLUG_04994 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E CLUG_04248 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E CLUG_04548 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E CLUG_01082 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E CLUG_01900 hypothetical protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E CLUG_02116 hypothetical protein K15541 MPE1; protein MPE1
E CLUG_02712 hypothetical protein K15542 PFS2; polyadenylation factor subunit 2
E CLUG_02588 hypothetical protein K14962 WDR82; COMPASS component SWD2
E CLUG_00630 similar to type 1 protein phosphtase-I K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CLUG_01488 serine/threonine protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CLUG_04642 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CLUG_00292 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E CLUG_00059 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CLUG_00060 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CLUG_04563 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E CLUG_05709 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E CLUG_00365 hypothetical protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E CLUG_01270 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E CLUG_01570 hypothetical protein K11097 SNRPE; small nuclear ribonucleoprotein E
E CLUG_05171 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E CLUG_04248 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E CLUG_04548 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E CLUG_00059 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CLUG_00060 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CLUG_05709 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E CLUG_01793 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E CLUG_03278 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E CLUG_03093 hypothetical protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E CLUG_01681 hypothetical protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
D Poly(A) addition factors
E CLUG_04922 hypothetical protein K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D CLUG_05456 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D CLUG_00923 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E CLUG_00273 hypothetical protein K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E CLUG_02434 similar to ATP-dependent RNA helicase K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E CLUG_04796 hypothetical protein K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E CLUG_04517 hypothetical protein K12879 THOC2; THO complex subunit 2
E CLUG_00867 hypothetical protein K12880 THOC3; THO complex subunit 3
E CLUG_02212 hypothetical protein K18712 HPR1; THO complex subunit HPR1
D TREX-2 complex
E CLUG_00547 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E CLUG_02994 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E CLUG_05255 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E CLUG_00135 hypothetical protein K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E CLUG_03980 hypothetical protein K09291 TPR; nucleoprotein TPR
E CLUG_05317 hypothetical protein K14298 RAE1; mRNA export factor
E CLUG_03770 hypothetical protein K14004 SEC13; protein transport protein SEC13
E CLUG_05498 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E CLUG_05195 hypothetical protein K14308 NUP54; nuclear pore complex protein Nup54
E CLUG_01889 hypothetical protein K14306 NUP62; nuclear pore complex protein Nup62
E CLUG_01749 hypothetical protein K14309 NUP93; nuclear pore complex protein Nup93
E CLUG_05577 hypothetical protein K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E CLUG_03859 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E CLUG_00901 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E CLUG_05513 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E CLUG_02436 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E CLUG_02117 hypothetical protein K14303 NUP160; nuclear pore complex protein Nup160
E CLUG_03983 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E CLUG_00069 hypothetical protein K14307 NUPL1; nucleoporin p58/p45
E CLUG_01586 hypothetical protein K14315 NDC1; nucleoporin NDC1
E CLUG_01587 hypothetical protein K14315 NDC1; nucleoporin NDC1
E CLUG_05442 hypothetical protein K14299 SEH1; nucleoporin SEH1
E CLUG_01692 hypothetical protein K18715 NUP159; nucleoporin NUP159
E CLUG_03010 hypothetical protein K18716 NUP42; nucleoporin NUP42
E CLUG_03864 hypothetical protein K18717 ASM4; nucleoporin ASM4
E CLUG_01041 hypothetical protein K18718 NUP60; nucleoporin NUP60
E CLUG_02772 hypothetical protein K18719 NUP82; nucleoporin NUP82
E CLUG_00052 hypothetical protein K18720 NUP145; nucleoporin NUP145
E CLUG_02732 hypothetical protein K18721 NUP1; nucleoporin NUP1
E CLUG_02881 hypothetical protein K18722 NUP2; nucleoporin NUP2
E CLUG_04638 hypothetical protein K18723 GLE1; nucleoporin GLE1
E CLUG_03708 hypothetical protein K14284 NXF; nuclear RNA export factor
E CLUG_02067 hypothetical protein K18724 POM34; nucleoporin POM34
E CLUG_00330 hypothetical protein K18725 POM152; nucleoporin POM152
E CLUG_00229 hypothetical protein K14017 SNL1; HSP70 co-chaperone SNL1
D Ran-mediated transport factors
E CLUG_01626 GTP-binding nuclear protein GSP1/Ran K07936 RAN; GTP-binding nuclear protein Ran
E CLUG_03870 hypothetical protein K18726 FAF2; FAS-associated factor 2
E CLUG_03535 cell division control protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase
E CLUG_04355 similar to nuclear export factor CRM1 K14290 XPO1; exportin-1
E CLUG_01743 hypothetical protein K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E CLUG_03483 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E CLUG_01979 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E CLUG_02531 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E CLUG_02532 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E CLUG_05755 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E CLUG_01657 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E CLUG_03747 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E CLUG_04038 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E CLUG_01820 hypothetical protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E CLUG_01053 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E CLUG_01774 hypothetical protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E CLUG_04544 hypothetical protein K14411 MSI; RNA-binding protein Musashi
E CLUG_04018 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E CLUG_03824 hypothetical protein K06965 PELO; protein pelota
E CLUG_01203 hypothetical protein K14396 PABPN1; polyadenylate-binding protein 2
E CLUG_00689 hypothetical protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E CLUG_05289 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E CLUG_04165 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E CLUG_00523 hypothetical protein K11493 RCC1; regulator of chromosome condensation
E CLUG_03552 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E CLUG_00415 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E CLUG_04177 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
E CLUG_00841 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E CLUG_05392 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E CLUG_00546 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E CLUG_01990 serine/threonine protein phosphatase PP2A-2 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E CLUG_03496 hypothetical protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E CLUG_03088 hypothetical protein K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E CLUG_01618 hypothetical protein K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E CLUG_03747 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E CLUG_05521 hypothetical protein K18737 SHE3; SWI5-dependent HO expression protein 3
E CLUG_03781 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E CLUG_04947 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E CLUG_00120 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E CLUG_03252 hypothetical protein K10357 MYO5; myosin V
E CLUG_00208 hypothetical protein K18658 ASH1; transcriptional regulatory protein ASH1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E CLUG_00476 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E CLUG_00178 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E CLUG_02026 hypothetical protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E CLUG_01802 hypothetical protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E CLUG_00073 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E CLUG_03483 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E CLUG_00841 hypothetical protein K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E CLUG_01657 hypothetical protein K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E CLUG_04081 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E CLUG_03337 hypothetical protein K18749 LSM14; protein LSM14
E CLUG_00433 hypothetical protein K18752 TNPO1; transportin-1
E CLUG_00572 hypothetical protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E CLUG_05816 cAMP-dependent protein kinase type 2 K04345 PKA; protein kinase A [EC:2.7.11.11]
E CLUG_01164 hypothetical protein K18757 LARP1; la-related protein 1
D P-body specific factors
E CLUG_02825 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E CLUG_02209 hypothetical protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E CLUG_00092 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E CLUG_01514 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E CLUG_03652 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E CLUG_03252 hypothetical protein K10357 MYO5; myosin V
E CLUG_02735 tubulin alpha chain K07374 TUBA; tubulin alpha
E CLUG_05207 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CLUG_05208 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CLUG_04136 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E CLUG_00168 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CLUG_05852 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CLUG_03959 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E CLUG_01307 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CLUG_01308 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CLUG_01028 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E CLUG_04289 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E CLUG_01235 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E CLUG_02565 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E CLUG_04567 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E CLUG_00053 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E CLUG_05392 hypothetical protein K14327 UPF2; regulator of nonsense transcripts 2
E CLUG_00546 hypothetical protein K14328 UPF3; regulator of nonsense transcripts 3
E CLUG_03627 similar to RNA polymerase II subunit 7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E CLUG_04795 hypothetical protein K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E CLUG_04765 hypothetical protein K13201 TIA1; nucleolysin TIA-1/TIAR
E CLUG_04038 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E CLUG_01697 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E CLUG_01470 hypothetical protein K03253 EIF3B; translation initiation factor 3 subunit B
E CLUG_01979 eukaryotic initiation factor 4A K03257 EIF4A; translation initiation factor 4A
E CLUG_02434 similar to ATP-dependent RNA helicase K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E CLUG_05755 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E CLUG_02531 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E CLUG_02532 hypothetical protein K03260 EIF4G; translation initiation factor 4G
E CLUG_05667 hypothetical protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E CLUG_03708 hypothetical protein K14284 NXF; nuclear RNA export factor
E CLUG_04316 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E CLUG_02209 hypothetical protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E CLUG_02825 hypothetical protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E CLUG_04081 hypothetical protein K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E CLUG_04567 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E CLUG_00053 hypothetical protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E CLUG_02565 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E CLUG_00092 hypothetical protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E CLUG_01514 hypothetical protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E CLUG_03652 hypothetical protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
D 5' exonucleases
E CLUG_00073 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E CLUG_03973 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E CLUG_03974 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E CLUG_04283 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E CLUG_00931 hypothetical protein K07573 CSL4; exosome complex component CSL4
E CLUG_00815 hypothetical protein K03679 RRP4; exosome complex component RRP4
E CLUG_01445 hypothetical protein K03681 RRP40; exosome complex component RRP40
E CLUG_05019 hypothetical protein K11600 RRP41; exosome complex component RRP41
E CLUG_02055 hypothetical protein K12590 RRP46; exosome complex component RRP46
E CLUG_03863 hypothetical protein K12589 RRP42; exosome complex component RRP42
E CLUG_03564 hypothetical protein K12586 RRP43; exosome complex component RRP43
E CLUG_00535 hypothetical protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E CLUG_00520 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E CLUG_05868 hypothetical protein K12592 C1D; exosome complex protein LRP1
E CLUG_03655 hypothetical protein K12594 MPP6; M-phase phosphoprotein 6, fungi type
D TRAMP complex
E CLUG_02216 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E CLUG_00550 hypothetical protein K12597 AIR1_2; protein AIR1/2
E CLUG_02971 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E CLUG_01036 hypothetical protein K12600 SKI3; superkiller protein 3
E CLUG_02770 hypothetical protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E CLUG_01307 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CLUG_01308 hypothetical protein K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CLUG_05207 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CLUG_05208 hypothetical protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CLUG_04136 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E CLUG_00168 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CLUG_05852 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CLUG_03959 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E CLUG_01028 hypothetical protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E CLUG_03266 similar to potential CCR4-NOT complex associated factor Caf40p K12606 RCD1; CCR4-NOT transcription complex subunit 9
E CLUG_01128 hypothetical protein K12608 CAF16; CCR4-NOT complex subunit CAF16
E CLUG_02166 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
E CLUG_00949 hypothetical protein K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120
D Pan complex
E CLUG_04289 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E CLUG_01235 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E CLUG_04283 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E CLUG_04449 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E CLUG_04049 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E CLUG_04431 hypothetical protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E CLUG_03897 enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E CLUG_00984 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E CLUG_01811 hypothetical protein K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E CLUG_04122 heat shock protein SSC1, mitochondrial precursor K04043 dnaK; molecular chaperone DnaK
E CLUG_03878 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E CLUG_00619 heat shock protein 60, mitochondrial precursor K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E CLUG_00815 hypothetical protein K03679 RRP4; exosome complex component RRP4
E CLUG_00931 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E CLUG_05019 hypothetical protein K11600 RRP41; exosome complex component RRP41
E CLUG_03863 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024