+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Clavispora lusitaniae CBS 6936</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        A9F13_22g00143 putative mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        A9F13_14g01133 putative cyclin-dependent kinase	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        A9F13_21g00253 putative TFIIH complex serine/threonine-protein kinase subunit	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        A9F13_22g00792 putative mRNA-capping enzyme subunit	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
E        A9F13_13g01287 putative mRNA-capping enzyme subunit beta	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
D      Cap binding complex
E        A9F13_09g01881 putative nuclear cap-binding protein complex subunit	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        A9F13_15g01496 putative nuclear cap-binding protein subunit	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        A9F13_18g00572 putative mRNA cleavage and polyadenylation factor	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        A9F13_16g01078 putative pre-mRNA cleavage and polyadenylation factor I subunit	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        A9F13_02g02167 hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        A9F13_03g02431 hypothetical protein	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        A9F13_04g02783 putative cleavage polyadenylation factor subunit	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        A9F13_11g02420 putative endoribonuclease	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        A9F13_09g01353 putative mRNA 3'-end-processing protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        A9F13_02g04026 putative pre-mRNA polyadenylation factor	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        A9F13_02g01771 putative cleavage polyadenylation factor subunit	K15541 MPE1; protein MPE1 
E        A9F13_07g01353 putative polyadenylation factor subunit	K15542 PFS2; polyadenylation factor subunit 2 
E        A9F13_07g02849 hypothetical protein	K14962 WDR82; COMPASS component SWD2 
E        A9F13_11g01529 putative serine/threonine-protein phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        A9F13_17g00088 putative serine/threonine-protein phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        A9F13_06g03047 putative serine/threonine-protein phosphatase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        A9F13_08g01001 putative RNA polymerase II subunit	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        A9F13_19g00385 putative cleavage polyadenylation factor subunit	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        A9F13_19g00407 putative mRNA 3'-end-processing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        A9F13_11g02266 putative mRNA 3'-end-processing protein	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        A9F13_05g02475 putative RNA-processing protein	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        A9F13_08g01716 putative mRNA splicing protein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        A9F13_06g00693 putative mRNA splicing protein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        A9F13_13g00110 putative mRNA splicing protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        A9F13_03g00638 putative mRNA splicing protein	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        A9F13_07g01650 putative mRNA splicing protein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        A9F13_04g02783 putative cleavage polyadenylation factor subunit	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        A9F13_11g02420 putative endoribonuclease	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        A9F13_19g00385 putative cleavage polyadenylation factor subunit	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        A9F13_19g00407 putative mRNA 3'-end-processing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        A9F13_05g02475 putative RNA-processing protein	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        A9F13_21g00825 putative transcription elongation factor	K15171 SUPT4H1; transcription elongation factor SPT4 
E        A9F13_01g09130 putative transcription elongation factor	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        A9F13_12g01133 putative mRNA (N6-adenosine)-methyltransferase	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        A9F13_13g01265 putative karyogamy protein	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
D      Poly(A) addition factors
E        A9F13_03g03047 putative poly(A) polymerase	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      A9F13_16g01408 hypothetical protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      A9F13_10g02112 putative mRNA-binding protein	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        A9F13_15g00737 putative RNA annealing protein	K12881 THOC4; THO complex subunit 4 
E        A9F13_11g01122 putative RNA-binding protein	K12881 THOC4; THO complex subunit 4 
E        A9F13_08g00814 putative ATP-dependent RNA helicase	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        A9F13_24g00605 putative ATP-dependent RNA helicase	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        A9F13_27g00176 putative phosphodiesterase	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        A9F13_25g00539 putative THO complex subunit	K12879 THOC2; THO complex subunit 2 
E        A9F13_10g01463 hypothetical protein	K12880 THOC3; THO complex subunit 3 
E        A9F13_15g00737 putative RNA annealing protein	K12881 THOC4; THO complex subunit 4 
E        A9F13_11g01122 putative RNA-binding protein	K12881 THOC4; THO complex subunit 4 
E        A9F13_02g00913 hypothetical protein	K18712 HPR1; THO complex subunit HPR1 
D      TREX-2 complex
E        A9F13_15g00891 putative nuclear mRNA export protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        A9F13_18g01144 putative proteasome regulatory particle lid subunit	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        A9F13_14g00264 putative transcription and mRNA export factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        A9F13_01g04389 putative centrin	K16466 CETN3; centrin-3 
E        A9F13_20g00627 putative nuclear mRNA export protein	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        A9F13_01g01496 hypothetical protein	K09291 TPR; nucleoprotein TPR 
E        A9F13_14g00902 putative RNA export factor	K14298 RAE1; mRNA export factor 
E        A9F13_01g03718 putative protein transport protein	K14004 SEC13; protein transport protein SEC13 
E        A9F13_16g00968 putative nucleoporin	K14304 NUP85; nuclear pore complex protein Nup85 
E        A9F13_03g00407 putative FG-nucleoporin	K14308 NUP54; nuclear pore complex protein Nup54 
E        A9F13_02g04136 putative FG-nucleoporin	K14306 NUP62; nuclear pore complex protein Nup62 
E        A9F13_13g02002 putative linker nucleoporin	K14309 NUP93; nuclear pore complex protein Nup93 
E        A9F13_25g00099 putative FG-nucleoporin	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        A9F13_01g02750 putative nucleoporin	K14301 NUP107; nuclear pore complex protein Nup107 
E        A9F13_10g01804 putative nucleoporin	K14300 NUP133; nuclear pore complex protein Nup133 
E        A9F13_16g00781 putative nucleoporin	K14311 NUP188; nuclear pore complex protein Nup188 
E        A9F13_24g00627 putative nucleoporin	K14312 NUP155; nuclear pore complex protein Nup155 
E        A9F13_02g01760 putative nucleoporin	K14303 NUP160; nuclear pore complex protein Nup160 
E        A9F13_01g01441 putative nucleoporin	K14310 NUP205; nuclear pore complex protein Nup205 
E        A9F13_19g00297 putative FG-nucleoporin	K14307 NUPL1; nucleoporin p58/p45 
E        A9F13_13g00253 putative nucleoporin	K14315 NDC1; nucleoporin NDC1 
E        A9F13_23g00847 putative nucleoporin	K14299 SEH1; nucleoporin SEH1 
E        A9F13_13g01375 hypothetical protein	K18715 NUP159; nucleoporin NUP159 
E        A9F13_12g00176 putative stress protein	K18716 NUP42; nucleoporin NUP42 
E        A9F13_01g02706 putative FG-nucleoporin	K18717 ASM4; nucleoporin ASM4 
E        A9F13_09g00880 hypothetical protein	K18718 NUP60; nucleoporin NUP60 
E        A9F13_07g00605 putative linker nucleoporin	K18719 NUP82; nucleoporin NUP82 
E        A9F13_19g00484 putative nucleocytoplasmic transporter	K18720 NUP145; nucleoporin NUP145 
E        A9F13_07g01089 putative fG-nucleoporin	K18721 NUP1; nucleoporin NUP1 
E        A9F13_26g00143 putative nucleoporin	K18722 NUP2; nucleoporin NUP2 
E        A9F13_01g04389 putative centrin	K16466 CETN3; centrin-3 
E        A9F13_11g01573 putative nucleoporin	K18723 GLE1; nucleoporin GLE1 
E        A9F13_01g04422 putative mRNA export factor	K14284 NXF; nuclear RNA export factor 
E        A9F13_08g00088 putative mRNA transport regulator	K14543 MTR2; mRNA transport regulator MTR2 
E        A9F13_02g02244 putative nucleoporin	K18724 POM34; nucleoporin POM34 
E        A9F13_08g01386 putative nucleoporin	K18725 POM152; nucleoporin POM152 
E        A9F13_08g00341 putative BAG family molecular chaperone regulator	K14017 SNL1; HSP70 co-chaperone SNL1 
D      Ran-mediated transport factors
E        A9F13_13g00671 putative GTP-binding nuclear protein	K07936 RAN; GTP-binding nuclear protein Ran 
E        A9F13_01g02629 hypothetical protein	K18726 FAF2; FAS-associated factor 2 
E        A9F13_01g06358 putative AAA family ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        A9F13_04g01551 putative exportin	K14290 XPO1; exportin-1 
E        A9F13_17g00814 putative GTPase-activating protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        A9F13_13g01925 putative mRNA-binding protein	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      eIF4F and regulatory proteins
E        A9F13_01g06963 putative eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        A9F13_02g03135 putative ATP-dependent RNA helicase	K03257 EIF4A; translation initiation factor 4A 
E        A9F13_07g03410 putative translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        A9F13_05g02002 putative eukaryotic translation initiation factor	K03258 EIF4B; translation initiation factor 4B 
E        A9F13_13g01001 putative ATP-dependent RNA helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        A9F13_01g03971 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        A9F13_01g00759 putative polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        A9F13_26g00627 putative SKI complex RNA helicase subunit	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        A9F13_21g00462 putative RNA helicase	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        A9F13_09g01001 putative translation machinery-associated protein	K07575 MCTS; malignant T-cell-amplified sequence 
E        A9F13_30g00165 putative translation machinery-associated protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        A9F13_25g00253 putative nuclear polyadenylated RNA-binding protein	K14411 MSI; RNA-binding protein Musashi 
E        A9F13_01g00990 putative ribosome dissociation factor GTPase	K14416 HBS1; elongation factor 1 alpha-like protein 
E        A9F13_01g03113 hypothetical protein	K06965 PELO; protein pelota 
E        A9F13_09g02662 putative RNA-binding protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        A9F13_17g00737 putative ATP-dependent RNA helicase	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        A9F13_14g00616 putative pre-mRNA-splicing factor	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        A9F13_04g03586 hypothetical protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        A9F13_15g01166 putative Ran guanyl-nucleotide exchange factor	K11493 RCC1; regulator of chromosome condensation 
E        A9F13_01g06182 hypothetical protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        A9F13_08g02189 putative translation termination factor	K03265 ETF1; peptide chain release factor subunit 1 
E        A9F13_04g03476 putative eukaryotic peptide chain release factor GTP-binding subunit	K03267 ERF3; peptide chain release factor subunit 3 
E        A9F13_10g01177 putative ATP-dependent RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        A9F13_23g00242 putative nonsense-mediated mRNA decay protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        A9F13_15g00902 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        A9F13_02g03036 putative serine/threonine-protein phosphatase	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        A9F13_01g06798 putative protein phosphatase structural subunit	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        A9F13_12g01078 putative protein phosphatase PP2A regulatory subunit	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        A9F13_13g00594 putative protein phosphatase 2A regulatory subunit	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        A9F13_01g03971 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        A9F13_16g00660 putative SWI5-dependent HO expression protein	K18737 SHE3; SWI5-dependent HO expression protein 3 
E        A9F13_01g03586 hypothetical protein	K14844 PUF6; pumilio homology domain family member 6 
E        A9F13_20g00495 putative PAB1-binding protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        A9F13_03g02893 putative heterogeneous nuclear rnp K-like protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        A9F13_01g09405 putative myosin	K10357 MYO5; myosin V 
E        A9F13_08g00110 putative transcriptional regulatory protein	K18658 ASH1; transcriptional regulatory protein ASH1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        A9F13_54g00066 putative elongation factor	K03231 EEF1A; elongation factor 1-alpha 
E        A9F13_02g02662 putative translation elongation factor EF1B gamma	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        A9F13_21g00704 putative mRNA-binding translational repressor	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        A9F13_19g00242 putative chromatin-binding exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        A9F13_01g06963 putative eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        A9F13_10g01177 putative ATP-dependent RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        A9F13_13g01001 putative ATP-dependent RNA helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        A9F13_01g00286 putative ATP-dependent RNA helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        A9F13_01g08558 hypothetical protein	K18749 LSM14; protein LSM14 
E        A9F13_08g02387 putative importin subunit	K18752 TNPO1; transportin-1 
E        A9F13_15g00605 putative cAMP-dependent protein kinase type	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        A9F13_05g01353 putative cAMP-dependent protein kinase catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        A9F13_09g02266 hypothetical protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        A9F13_26g00682 putative decapping enzyme complex catalytic subunit	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        A9F13_02g00946 putative mRNA-decapping enzyme subunit	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        A9F13_20g00099 hypothetical protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        A9F13_05g03256 hypothetical protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        A9F13_06g03333 putative U4/U6-U5 snRNP complex subunit	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        A9F13_01g05093 putative u6 snRNA complex subunit	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        A9F13_05g02794 putative RNA-binding protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        A9F13_07g02211 putative U6 snRNA-associated Sm-like protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        A9F13_03g00561 hypothetical protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        A9F13_10g00209 putative U4/U6-U5 snRNP complex subunit	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        A9F13_01g09405 putative myosin	K10357 MYO5; myosin V 
E        A9F13_07g01056 putative tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        A9F13_03g00275 putative CCR4-NOT core subunit	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        A9F13_04g03949 putative CCR4-NOT core subunit	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        A9F13_20g01012 putative general negative regulator of transcription subunit	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        A9F13_05g00979 putative CCR4-NOT core subunit	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        A9F13_01g01672 putative ubiquitin-protein ligase subunit	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        A9F13_06g01111 putative glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        A9F13_06g01122 putative glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        A9F13_09g00759 putative CCR4-NOT core DEDD family RNase subunit	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        A9F13_04g02310 putative poly(A)-specific ribonuclease subunit	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        A9F13_06g00286 putative PAB-dependent poly(A)-specific ribonuclease subunit	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        A9F13_07g03080 putative DNA topoisomerase 2-associated protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        A9F13_11g02222 putative enhancer of mRNA-decapping protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        A9F13_19g00473 putative enhancer of mRNA-decapping protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        A9F13_23g00242 putative nonsense-mediated mRNA decay protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        A9F13_15g00902 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        A9F13_01g05335 putative DNA-directed RNA polymerase II subunit	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        A9F13_27g00165 putative mRNA-binding phosphate metabolism regulator	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        A9F13_11g00286 putative nuclear and cytoplasmic polyadenylated RNA-binding protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        A9F13_01g00759 putative polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        A9F13_13g01419 putative eukaryotic translation initiation factor	K15026 EIF2A; translation initiation factor 2A 
E        A9F13_06g02838 putative eukaryotic translation initiation factor subunit	K03253 EIF3B; translation initiation factor 3 subunit B 
E        A9F13_02g03135 putative ATP-dependent RNA helicase	K03257 EIF4A; translation initiation factor 4A 
E        A9F13_24g00605 putative ATP-dependent RNA helicase	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        A9F13_05g02002 putative eukaryotic translation initiation factor	K03258 EIF4B; translation initiation factor 4B 
E        A9F13_07g03410 putative translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        A9F13_05g02893 putative guanine nucleotide-binding protein subunit	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        A9F13_01g04422 putative mRNA export factor	K14284 NXF; nuclear RNA export factor 
E        A9F13_04g01947 putative histone deacetylase	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        A9F13_02g00946 putative mRNA-decapping enzyme subunit	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        A9F13_26g00682 putative decapping enzyme complex catalytic subunit	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        A9F13_01g00286 putative ATP-dependent RNA helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        A9F13_11g02222 putative enhancer of mRNA-decapping protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        A9F13_19g00473 putative enhancer of mRNA-decapping protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        A9F13_07g03080 putative DNA topoisomerase 2-associated protein	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        A9F13_20g00099 hypothetical protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        A9F13_05g03256 hypothetical protein	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        A9F13_06g03333 putative U4/U6-U5 snRNP complex subunit	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        A9F13_01g05093 putative u6 snRNA complex subunit	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        A9F13_05g02794 putative RNA-binding protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        A9F13_07g02211 putative U6 snRNA-associated Sm-like protein	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        A9F13_03g00561 hypothetical protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        A9F13_10g00209 putative U4/U6-U5 snRNP complex subunit	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        A9F13_19g00242 putative chromatin-binding exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        A9F13_01g01562 putative 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        A9F13_04g02376 putative 5'-(N(7)-methyl 5'-triphosphoguanosine)-(mRNA) diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        A9F13_10g02200 putative exosome non-catalytic core subunit	K07573 CSL4; exosome complex component CSL4 
E        A9F13_10g00847 putative exosome non-catalytic core subunit	K03679 RRP4; exosome complex component RRP4 
E        A9F13_06g02574 putative exosome non-catalytic core subunit	K03681 RRP40; exosome complex component RRP40 
E        A9F13_03g02167 putative exosome non-catalytic core subunit	K11600 RRP41; exosome complex component RRP41 
E        A9F13_02g02376 putative exosome non-catalytic core subunit	K12590 RRP46; exosome complex component RRP46 
E        A9F13_02g00627 putative exosome non-catalytic core subunit	K12587 MTR3; exosome complex component MTR3 
E        A9F13_01g02717 putative exosome non-catalytic core subunit	K12589 RRP42; exosome complex component RRP42 
E        A9F13_01g06039 putative exosome non-catalytic core subunit	K12586 RRP43; exosome complex component RRP43 
E        A9F13_15g01034 putative exosome non-catalytic core subunit	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        A9F13_15g01210 putative exosome nuclease subunit	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        A9F13_05g00781 putative exosome complex protein	K12592 C1D; exosome complex protein LRP1 
D      TRAMP complex
E        A9F13_02g00869 putative non-canonical poly(A) polymerase	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        A9F13_15g00858 putative TRAMP complex RNA-binding subunit	K12597 AIR1_2; protein AIR1/2 
E        A9F13_18g00825 putative ATP-dependent RNA helicase	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        A9F13_26g00627 putative SKI complex RNA helicase subunit	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        A9F13_09g00825 putative sKI complex subunit tetratricopeptide repeat protein	K12600 SKI3; superkiller protein 3 
E        A9F13_07g00638 putative SKI complex subunit WD repeat protein	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        A9F13_06g01111 putative glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        A9F13_06g01122 putative glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        A9F13_03g00275 putative CCR4-NOT core subunit	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        A9F13_04g03949 putative CCR4-NOT core subunit	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        A9F13_20g01012 putative general negative regulator of transcription subunit	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        A9F13_05g00979 putative CCR4-NOT core subunit	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        A9F13_01g01672 putative ubiquitin-protein ligase subunit	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        A9F13_09g00759 putative CCR4-NOT core DEDD family RNase subunit	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        A9F13_01g09262 hypothetical protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        A9F13_09g01892 putative ATP-binding cassette family ATPase	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        A9F13_02g01298 hypothetical protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
E        A9F13_10g02398 hypothetical protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        A9F13_04g02310 putative poly(A)-specific ribonuclease subunit	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        A9F13_06g00286 putative PAB-dependent poly(A)-specific ribonuclease subunit	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        A9F13_04g02376 putative 5'-(N(7)-methyl 5'-triphosphoguanosine)-(mRNA) diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        A9F13_04g00550 hypothetical protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        A9F13_01g00605 putative ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        A9F13_04g00726 putative oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        A9F13_01g02321 putative enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        A9F13_09g00352 putative ATP-dependent 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        A9F13_21g00594 putative ATP-dependent 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        A9F13_01g02541 putative hsp70 family ATPase	K04043 dnaK; molecular chaperone DnaK 
E        A9F13_32g00077 putative heat shock protein	K04043 dnaK; molecular chaperone DnaK 
E        A9F13_15g00165 putative heat shock protein	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        A9F13_10g00847 putative exosome non-catalytic core subunit	K03679 RRP4; exosome complex component RRP4 
E        A9F13_10g02200 putative exosome non-catalytic core subunit	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        A9F13_03g02167 putative exosome non-catalytic core subunit	K11600 RRP41; exosome complex component RRP41 
E        A9F13_01g02717 putative exosome non-catalytic core subunit	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024