+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Columba livia (rock pigeon)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 102086695 FBL; rRNA 2'-O-methyltransferase fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D 102089139 NOP56; LOW QUALITY PROTEIN: nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 102086502 NOP58; nucleolar protein 58 K14565 NOP58; nucleolar protein 58
C Box H/ACA snoRNPs
D 102091240 DKC1; H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 102092259 GAR1; H/ACA ribonucleoprotein complex subunit 1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D 106145707 NHP2; H/ACA ribonucleoprotein complex subunit 2 K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D 102097364 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D 102091737 SHQ1; LOW QUALITY PROTEIN: protein SHQ1 homolog K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D 102097667 MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D 102098178 RRP7A; ribosomal RNA-processing protein 7 homolog A K14545 RRP7; ribosomal RNA-processing protein 7
D 102085849 PWP2; periodic tryptophan protein 2 homolog K14558 PWP2; periodic tryptophan protein 2
D 102092150 NOP14; nucleolar protein 14 K14766 NOP14; nucleolar protein 14
D 102093493 UTP3; something about silencing protein 10 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D 102086781 UTP4; U3 small nucleolar RNA-associated protein 4 homolog K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D 102095882 UTP6; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 6 homolog K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D 102090671 HEATR1; LOW QUALITY PROTEIN: HEAT repeat-containing protein 1 K14550 UTP10; U3 small nucleolar RNA-associated protein 10
D 102089644 UTP11; probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D 102086600 WDR3; WD repeat-containing protein 3 isoform X1 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D 102090686 TBL3; transducin beta-like protein 3 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 102087638 UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D 102095595 UTP15; U3 small nucleolar RNA-associated protein 15 homolog K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D 102093914 WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 102088223 WD repeat-containing protein 75-like K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 102091122 UTP18; U3 small nucleolar RNA-associated protein 18 homolog K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D 102092991 NOC4L; nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 102091727 UTP20; small subunit processome component 20 homolog K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D 102092473 WDR36; WD repeat-containing protein 36 isoform X1 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D 102093201 NOL6; nucleolar protein 6 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D 102085221 UTP23; rRNA-processing protein UTP23 homolog K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D 102086654 FCF1; rRNA-processing protein FCF1 homolog K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D 102088892 DIEXF; digestive organ expansion factor homolog K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D 102088814 RSL1D1; ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D 102096061 DDX10; probable ATP-dependent RNA helicase DDX10 isoform X1 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D 102098710 DDX18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 102089309 DDX47; probable ATP-dependent RNA helicase DDX47 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D 102095394 DDX49; probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D 102091074 DDX52; probable ATP-dependent RNA helicase DDX52 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D 102085020 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 102091233 DHX37; probable ATP-dependent RNA helicase DHX37 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D 102094675 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D 102097245 BMS1; ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D 102092129 DROSHA; LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D 102089331 REXO4; RNA exonuclease 4 K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D 102084702 DBR1; lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D 102098577 CSNK2A1; casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 102090503 CSNK2A2; casein kinase II subunit alpha' K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 102086938 casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
C Other 90S particles
D 102090717 AATF; protein AATF isoform X1 K14782 AATF; protein AATF/BFR2
D 102087831 CMSS1; protein CMSS1 isoform X2 K14784 CMS1; protein CMS1
D 102093025 EMG1; ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D 102088290 ABT1; activator of basal transcription 1 K14785 ESF2; ESF2/ABP1 family protein
D 102090133 KRR1; KRR1 small subunit processome component homolog K06961 KRR1; ribosomal RNA assembly protein
D 102085785 RBM19; probable RNA-binding protein 19 isoform X4 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D 102083930 NAT10; RNA cytidine acetyltransferase K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D 102094559 NCL; nucleolin K11294 NCL; nucleolin
D 102084169 NOL10; nucleolar protein 10 K14788 NOL10; ribosome biogenesis protein ENP2
D 102091937 PINX1; PIN2/TERF1-interacting telomerase inhibitor 1 K11135 PINX1; Pin2-interacting protein X1
D 102086351 PWP1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 102098212 RCL1; RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D 102089878 PDCD11; protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5
D 102095899 RRP9; U3 small nucleolar RNA-interacting protein 2 K14793 RRP9; ribosomal RNA-processing protein 9
D 102091319 RRP12; RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 102089860 TCOF1; treacle protein K14562 TCOF1; Treacher Collins syndrome protein
D 102087016 DCAF13; DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D 102098078 RIOK1; serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D 102086779 RIOK2; serine/threonine-protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D 102098281 DIMT1; probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D 102086731 BUD23; probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D 102095308 METTL5; methyltransferase-like protein 5 isoform X2 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D 102092309 BYSL; bystin K14797 ENP1; essential nuclear protein 1
D 102084476 LTV1; protein LTV1 homolog K14798 LTV1; protein LTV1
D 102085859 NOB1; RNA-binding protein NOB1 K11883 NOB1; RNA-binding protein NOB1
D 106145751 PNO1; RNA-binding protein PNO1 K11884 PNO1; RNA-binding protein PNO1
D 102091968 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 102092799 AK6; adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D 102093608 TSR1; pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1
D 102086448 TSR2; pre-rRNA-processing protein TSR2 homolog K14800 TSR2; pre-rRNA-processing protein TSR2
D 102087520 TSR3; ribosome biogenesis protein TSR3 homolog isoform X1 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 102085302 PDCD2L; programmed cell death protein 2-like K14801 TSR4; pre-rRNA-processing protein TSR4
D 110363395 PDCD2; programmed cell death protein 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D 102097481 RPS19BP1; active regulator of SIRT1 K26536 RPS19BP1; active regulator of SIRT1
D 102084229 XPO1; exportin-1 K14290 XPO1; exportin-1
D 102094425 KPNB1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 102093226 TNPO1; transportin-1 K18752 TNPO1; transportin-1
D 102094303 IPO5; importin-5 isoform X1 K20222 IPO5; importin-5
D 102084205 IPO7; importin-7 K20223 IPO7; importin-7
D 102091134 IPO9; importin-9 K20224 IPO9; importin-9
C Other pre-40S particles
D 102096479 ATP8A2; phospholipid-transporting ATPase IB isoform X1 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 102098463 ATP8A1; phospholipid-transporting ATPase IA K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 102088024 EIF3J; eukaryotic translation initiation factor 3 subunit J K03245 EIF3J; translation initiation factor 3 subunit J
D 102098213 ABCE1; ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D 102084479 DDX5; probable ATP-dependent RNA helicase DDX5 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 102098710 DDX18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 102092746 LOW QUALITY PROTEIN: nucleolar RNA helicase 2-like K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 102092924 LOW QUALITY PROTEIN: nucleolar RNA helicase 2-like K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 102092472 DDX24; ATP-dependent RNA helicase DDX24 K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D 102086275 DDX27; probable ATP-dependent RNA helicase DDX27 K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D 102087663 DDX31; probable ATP-dependent RNA helicase DDX31 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D 102085975 DDX51; ATP-dependent RNA helicase DDX51 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D 102087438 DDX54; ATP-dependent RNA helicase DDX54 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D 102089094 DDX55; ATP-dependent RNA helicase DDX55 isoform X1 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D 102097969 DDX56; probable ATP-dependent RNA helicase DDX56 K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D 102096300 SKIV2L2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D 102092187 GNL3; guanine nucleotide-binding protein-like 3 K14538 NUG1; nuclear GTP-binding protein
D 102091874 GNL2; nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein
D 102096897 GTPBP4; nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein
D 102093520 LSG1; large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D 102086937 EFL1; elongation factor-like GTPase 1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D 102085375 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D 102089746 REXO1; RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 102085860 REXO5; putative RNA exonuclease NEF-sp K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 110364989 RNA exonuclease 1 homolog isoform X1 K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 102097760 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 102093706 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E 102088669 POP1; ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E 102085527 POP4; ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E 102089112 POP5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E 102088315 RPP30; ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E 102088929 RPP25L; ribonuclease P protein subunit p25-like protein isoform X3 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 102093469 RPP25; ribonuclease P protein subunit p25 isoform X1 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 102096007 RPP38; ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
E 102091754 RPP40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
C Kinases
D 102087006 NOL9; polynucleotide 5'-hydroxyl-kinase NOL9 K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D 102085702 ABCF2; ATP-binding cassette sub-family F member 2 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 102087459 DNAJC21; dnaJ homolog subfamily C member 21 K09506 DNAJA5; DnaJ homolog subfamily A member 5
D 102091593 EIF6; eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 102086356 HSPA8; heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 102092474 HSPA2; heat shock-related 70 kDa protein 2 K26598 HSPA2; heat shock 70kDa protein 2
D 102087883 NMD3; 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D 102086248 NXT2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D 102091968 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 102084137 ZNF622; zinc finger protein 622 K14816 REI1; pre-60S factor REI1
D 102089343 SBDS; ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1
D 102095280 SPATA5; spermatogenesis-associated protein 5 isoform X3 K14575 AFG2; AAA family ATPase
D 102085470 SPATA5L1; spermatogenesis-associated protein 5-like protein 1 K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10]
D 102086300 CINP; cyclin-dependent kinase 2-interacting protein K26052 CINP; cyclin-dependent kinase 2-interacting protein
D 102084229 XPO1; exportin-1 K14290 XPO1; exportin-1
D 102094425 KPNB1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 102093226 TNPO1; transportin-1 K18752 TNPO1; transportin-1
D 102094303 IPO5; importin-5 isoform X1 K20222 IPO5; importin-5
D 102084205 IPO7; importin-7 K20223 IPO7; importin-7
D 102091134 IPO9; importin-9 K20224 IPO9; importin-9
D 102097342 DUSP12; dual specificity protein phosphatase 12 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D 102096868 TEX10; LOW QUALITY PROTEIN: testis-expressed protein 10 K14827 IPI1; pre-rRNA-processing protein IPI1
D 102091091 WDR18; WD repeat-containing protein 18 K14829 IPI3; pre-rRNA-processing protein IPI3
D 102086613 LAS1L; ribosomal biogenesis protein LAS1L isoform X1 K16912 LAS1; ribosomal biogenesis protein LAS1
C Ribosome quality control proteins
D 106145910 LTN1; E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D 102088253 TCF25; transcription factor 25 isoform X1 K24970 TCF25; transcription factor 25
D 102087038 NEMF; nuclear export mediator factor NEMF isoform X1 K24971 NEMF; nuclear export mediator factor NEMF
D 102091633 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D 102085345 NPLOC4; LOW QUALITY PROTEIN: nuclear protein localization protein 4 homolog K14015 NPLOC4; nuclear protein localization protein 4
D 102085538 UFD1; ubiquitin recognition factor in ER-associated degradation protein 1 isoform X3 K14016 UFD1; ubiquitin fusion degradation protein 1
D 110364786 PTRHD1; putative peptidyl-tRNA hydrolase PTRHD1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D 102087200 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D 102087645 BRIX1; ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1
D 106145906 CCDC86; LOW QUALITY PROTEIN: coiled-coil domain-containing protein 86 K14822 CGR1; rRNA-processing protein CGR1
D 102093064 EBNA1BP2; probable rRNA-processing protein EBP2 K14823 EBP2; rRNA-processing protein EBP2
D 102097907 BOP1; LOW QUALITY PROTEIN: ribosome biogenesis protein BOP1 K14824 ERB1; ribosome biogenesis protein ERB1
D 102090197 TMED5; transmembrane emp24 domain-containing protein 5 K14825 TMED5; p24 family protein gamma-2
D 102085119 PAK1IP1; p21-activated protein kinase-interacting protein 1 K14830 MAK11; protein MAK11
D 102089952 MAK16; protein MAK16 homolog isoform X1 K14831 MAK16; protein MAK16
D 102084467 CEBPZ; CCAAT/enhancer-binding protein zeta K14832 MAK21; ribosome biogenesis protein MAK21
D 102088975 MDN1; LOW QUALITY PROTEIN: midasin K14572 MDN1; midasin
D 102094535 NIP7; 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D 102096708 NOC2L; nucleolar complex protein 2 homolog isoform X1 K14833 NOC2; nucleolar complex protein 2
D 102089054 NOC3L; nucleolar complex protein 3 homolog K14834 NOC3; nucleolar complex protein 3
D 102098962 NOP2; probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D 102091022 RBM28; LOW QUALITY PROTEIN: RNA-binding protein 28 K14573 NOP4; nucleolar protein 4
D 102098427 NOL8; nucleolar protein 8 isoform X1 K14836 NOP8; nucleolar protein 8
D 102089759 RBM34; RNA-binding protein 34 K14837 NOP12; nucleolar protein 12
D 102090740 NIFK; MKI67 FHA domain-interacting nucleolar phosphoprotein K14838 NOP15; nucleolar protein 15
D 102096211 NSA2; ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2
D 102085747 PES1; pescadillo homolog K14843 PES1; pescadillo
D 102096196 PUM3; LOW QUALITY PROTEIN: pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
D 102086351 PWP1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 102085791 RIOX1; ribosomal oxygenase 1 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D 102088246 RIOX2; ribosomal oxygenase 2 isoform X3 K21760 RIOX2; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66]
D 102089015 NVL; nuclear valosin-containing protein-like K14571 RIX7; ribosome biogenesis ATPase
D 102096806 RPF1; ribosome production factor 1 K14846 RPF1; ribosome production factor 1
D 102094924 RPF2; ribosome production factor 2 homolog isoform X2 K14847 RPF2; ribosome production factor 2
D 102085314 RRP1B; ribosomal RNA processing protein 1 homolog B K14849 RRP1; ribosomal RNA-processing protein 1
D 102091319 RRP12; RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 102083704 NOL12; nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17
D 102084646 NLE1; notchless protein homolog 1 K14855 RSA4; ribosome assembly protein 4
D 102093669 SDAD1; protein SDA1 homolog K14856 SDA1; protein SDA1
D 102090182 FTSJ3; LOW QUALITY PROTEIN: pre-rRNA processing protein FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D 102089142 suppressor of SWI4 1 homolog K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D 102097550 TMA16; translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16
D 102089514 URB1; nucleolar pre-ribosomal-associated protein 1 K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D 102091640 URB2; LOW QUALITY PROTEIN: unhealthy ribosome biogenesis protein 2 homolog K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D 102092537 WDR12; ribosome biogenesis protein WDR12 K14863 WDR12; ribosome biogenesis protein
D 102098950 NUFIP1; nuclear fragile X mental retardation-interacting protein 1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
B Other ribosome biogenesis factors
C 102098415 BCCIP; BRCA2 and CDKN1A-interacting protein K15262 BCP1; protein BCP1
C 102091672 LYAR; cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein
C 102087568 NSUN4; LOW QUALITY PROTEIN: 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C 102085282 NSUN5; probable 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C 102096984 TFB1M; dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C 102090346 MRM1; rRNA methyltransferase 1, mitochondrial K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C 102092099 BMT2; probable methyltransferase BMT2 homolog K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C 102094327 MRM3; rRNA methyltransferase 3, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 106146141 ZCCHC4; zinc finger CCHC domain-containing protein 4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C 102090296 DDX28; probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C 102093975 DHX33; putative ATP-dependent RNA helicase DHX33 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C 102083567 IGHMBP2; LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2 K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
C 102088060 KDM8; lysine-specific demethylase 8 isoform X1 K10277 KDM8; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-]
C 102083771 PHF6; PHD finger protein 6 isoform X1 K23310 PHF6; PHD finger protein 6
C 102091480 ERAL1; GTPase Era, mitochondrial K03595 era; GTPase
C 102095458 CUNH12orf45; uncharacterized protein C12orf45 homolog K26142 NOPCHAP1; NOP protein chaperone 1
C 102092032 PA2G4; proliferation-associated protein 2G4 K26736 PA2G4; ERBB-3 binding protein
C 102095083 MTG1; mitochondrial ribosome-associated GTPase 1 isoform X2 K19828 MTG1; mitochondrial GTPase 1
C 102083469 MTG2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
C 102087896 NOA1; nitric oxide-associated protein 1 K19832 NOA1; nitric oxide-associated protein 1
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 102089139 NOP56; LOW QUALITY PROTEIN: nucleolar protein 56 K14564 NOP56; nucleolar protein 56
D 102088766 RPL7A; 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D 102091240 DKC1; H/ACA ribonucleoprotein complex subunit 4 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
D 102084583 MRM2; rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
B rRNA processing factors
C 102092129 DROSHA; LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C 102091480 ERAL1; GTPase Era, mitochondrial K03595 era; GTPase
C 102083469 MTG2; mitochondrial ribosome-associated GTPase 2 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C 102089073 YRDC; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024