+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Columba livia (rock pigeon)
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 102087781 RNMT; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 102089917 mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 102097940 CDK7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 102095138 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 102092901 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 102084993 FAM103A1; RNMT-activating mini protein isoform X2 K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 102083688 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 102095190 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
E 102092610 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 102090044 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 102099052 CPSF7; cleavage and polyadenylation specificity factor subunit 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 102086263 CPSF6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 102091765 CLP1; LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 102088889 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 102095722 CPSF1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 102094727 CPSF2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102097287 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102085618 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 102088119 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 102089520 pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 102095970 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 102085049 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 102086082 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102096027 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102083732 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 102097905 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 102097685 CSTF1; LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 102098024 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102085844 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 102085958 symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 102086456 LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B'-like K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 102093849 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 102093037 SNRPE; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 106145975 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 102091040 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 102087635 LSM11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 102094727 CPSF2; cleavage and polyadenylation specificity factor subunit 2 isoform X1 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 102097287 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 102098024 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 102085958 symplekin K06100 SYMPK; symplekin
E 102087475 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 102098613 uncharacterized protein LOC102098613 K18710 SLBP; histone RNA hairpin-binding protein
E 102087747 CASP8AP2; LOW QUALITY PROTEIN: CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 102083803 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 102083709 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 102092744 METTL14; N6-adenosine-methyltransferase subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 102084143 METTL4; methyltransferase-like protein 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 102083907 METTL16; methyltransferase-like protein 16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 102090121 WTAP; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 102090157 VIRMA; protein virilizer homolog K22910 VIRMA; protein virilizer
E 102097299 RBM15; LOW QUALITY PROTEIN: putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 102096824 RBM15B; LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 102085315 ZC3H13; LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 102095736 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X3 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 102086852 PAPOLA; poly(A) polymerase alpha isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102085332 PAPOLG; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 102091929 PAPD4; poly(A) RNA polymerase GLD2 isoform X2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 102091012 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 102090979 RBM26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 102091864 FTO; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102095450 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 102092254 TARDBP; LOW QUALITY PROTEIN: TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 102095596 DHX40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 102089287 KIN; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 102096956 METTL8; methyltransferase-like protein 8 isoform X1 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 102087050 METTL22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 102097470 FAM46A; LOW QUALITY PROTEIN: protein FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 102086830 FAM46B; protein FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 102086226 FAM46C; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 102085881 FAM46D; protein FAM46D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 102097588 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X4 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 102086086 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 102093451 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 102097797 spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 102094675 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102090404 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 102096102 protein CASC3 K14323 CASC3; protein CASC3
E 102094710 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 102095503 PNN; pinin K13114 PNN; pinin
E 102086782 RNPS1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 102084808 SRRM1; serine/arginine repetitive matrix protein 1 isoform X5 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 102097182 THOC1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 102088371 THOC2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 102085855 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 102093451 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 102093796 THOC5; LOW QUALITY PROTEIN: THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 102097664 THOC7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 102091927 PCID2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 102084474 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 102085543 LOW QUALITY PROTEIN: caltractin-like K10840 CETN2; centrin-2
E 102092647 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3
E 102088846 MCM3AP; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 102096433 TPR; LOW QUALITY PROTEIN: nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 102096777 RAE1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 102086861 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 102091729 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 102087995 NUP85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 102089828 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 102085820 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 102094040 NUP54; nucleoporin p54 K14308 NUP54; nuclear pore complex protein Nup54
E 102098687 nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 102098868 NUP62CL; nucleoporin-62 C-terminal-like protein K14306 NUP62; nuclear pore complex protein Nup62
E 102094161 NUP88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 102090395 NUP93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 102088999 NUP98; LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 102084379 NUP107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 102092007 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 102099050 NUP188; nucleoporin NUP188 homolog isoform X1 K14311 NUP188; nuclear pore complex protein Nup188
E 102085128 nuclear pore complex protein Nup153-like K14296 NUP153; nuclear pore complex protein Nup153
E 102084934 NUP153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 102085815 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 102095366 NUP160; LOW QUALITY PROTEIN: nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 102096726 NUP35; nucleoporin NUP53 K14313 NUP35; nuclear pore complex protein Nup53
E 102092629 NUP205; LOW QUALITY PROTEIN: nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 102083605 NUP210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 102091705 NUP214; LOW QUALITY PROTEIN: nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 102085101 LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121C K14316 POM121; nuclear pore complex protein Nup121
E 102096669 NUP58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 102093096 NUPL2; nucleoporin-like protein 2 K14321 NUPL2; nucleoporin-like protein 2
E 102088299 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 102096398 SEH1L; nucleoporin SEH1 isoform X2 K14299 SEH1; nucleoporin SEH1
E 102086702 E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 102097985 SENP2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 102091893 AAAS; LOW QUALITY PROTEIN: aladin K14320 AAAS; aladin
E 102092647 CETN3; centrin-3 isoform X2 K16466 CETN3; centrin-3
E 102087190 GLE1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 102086248 NXT2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 102091968 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 102093694 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 102089961 acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 102096597 ELAVL1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 102088396 ELAVL4; LOW QUALITY PROTEIN: ELAV-like protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 102085428 ELAVL2; ELAV-like protein 2 isoform X7 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 102085026 FAF2; FAS-associated factor 2 isoform X2 K18726 FAF2; FAS-associated factor 2
E 102091633 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 102089307 VCPKMT; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 102084229 XPO1; exportin-1 K14290 XPO1; exportin-1
E 102096875 XPO7; LOW QUALITY PROTEIN: exportin-7 K18460 XPO7; exportin-7
E 102094226 RANBP17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 102084320 RANGAP1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 102089244 TAF15; TATA-binding protein-associated factor 2N isoform X1 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 102084839 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 102095476 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 102095305 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 102087762 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 102084947 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 102090052 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 102096464 EIF4G3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 102091405 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 102091249 EIF4H; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 102083572 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 102097396 EIF4ENIF1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 102087028 ANGEL2; protein angel homolog 2 isoform X1 K18729 ANGEL; protein angel
E 102083726 ANGEL1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 102085629 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102084750 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102096482 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102088799 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102088186 GEMIN5; LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 102098009 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 102090088 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102087745 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X7 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102093501 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102097866 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102087330 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102095361 GIGYF2; GRB10-interacting GYF protein 2 isoform X3 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102090631 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102084806 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102097259 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102083827 PAIP1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 102094356 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 102086439 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 102095278 DEAF1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 102092538 MCTS1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 102086758 DENR; density-regulated protein isoform X2 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 102087964 C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110364178 C->U-editing enzyme APOBEC-1-like isoform X1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 102093566 A1CF; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 102089224 PYM1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 102097252 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X6 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102089846 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102099019 MSI1; RNA-binding protein Musashi homolog 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102093815 DAZAP1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 102091983 MSI2; RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 102084483 HBS1L; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 102090889 PELO; protein pelota homolog K06965 PELO; protein pelota
E 102096608 PABPN1L; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 102089127 ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 102094060 DDX25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 102089028 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 102095314 RCC1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 102098188 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 106145989 la-related protein 6-like K18733 LARP6; la-related protein 6
E 102089441 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 102096808 POLDIP3; LOW QUALITY PROTEIN: polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 102092855 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 102089533 PATL2; protein PAT1 homolog 2 isoform X3 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 102096181 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 102085865 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 102095827 UPF1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102084676 UPF2; regulator of nonsense transcripts 2 isoform X2 K14327 UPF2; regulator of nonsense transcripts 2
E 102091006 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 102089034 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 102093920 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102085353 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 102088592 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 102098008 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102094079 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X4 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102091831 PPP2R2B; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102090341 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102092041 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102095200 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102094033 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 102090722 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X2 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102094988 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102089360 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 102086913 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 102085693 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102083881 SMG5; protein SMG5 K11125 SMG5; protein SMG5
E 102093430 SMG6; LOW QUALITY PROTEIN: telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 102094346 SMG7; protein SMG7 isoform X3 K14409 SMG7; protein SMG7
E 102095851 SMG8; protein SMG8 K18734 SMG8; protein SMG8
E 102095361 GIGYF2; GRB10-interacting GYF protein 2 isoform X3 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 102089509 SECISBP2; selenocysteine insertion sequence-binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 102091947 SECISBP2L; LOW QUALITY PROTEIN: selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 102096203 GTPBP1; GTP-binding protein 1 isoform X3 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 102096196 PUM3; LOW QUALITY PROTEIN: pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 102094589 LOW QUALITY PROTEIN: unconventional myosin-Vb-like K10357 MYO5; myosin V
E 102090369 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 102090187 MYO5C; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 102091390 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 102091538 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 102091572 BICD2; protein bicaudal D homolog 2 isoform X2 K18739 BICD; protein bicaudal D
E 102097084 EXD1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 102092807 actin, cytoplasmic type 5 K05692 ACTB_G1; actin beta/gamma 1
E 102086906 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 102096570 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 102094417 MBP; myelin basic protein K17269 MBP; myelin basic protein
E 102087530 VIM; vimentin K07606 VIM; vimentin
E 102090214 metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 102085948 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 102098711 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 102092642 LOW QUALITY PROTEIN: T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 102086158 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 102096985 FUBP1; far upstream element-binding protein 1 isoform X5 K13210 FUBP; far upstream element-binding protein
E 102086256 FUBP3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 102088967 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 102084785 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 102086325 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 102086186 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 110364231 HAX1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 102094595 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 102086899 STAU1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102090597 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102092493 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 102084920 PTBP1; polypyrimidine tract-binding protein 1 isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 102090088 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102087745 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X7 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102093501 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102097866 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 102085629 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102084750 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102096482 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102088799 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 102088292 PCBP3; poly(rC)-binding protein 3 isoform X11 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102094188 PCBP4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102098626 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 102094801 CAPRIN1; caprin-1 isoform X1 K18743 CAPRIN1; caprin-1
E 102098582 CAPRIN2; LOW QUALITY PROTEIN: caprin-2 K18744 CAPRIN2; caprin-2
E 102094564 YBX1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 102097760 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 102089010 protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102089393 protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102092247 AGO2; protein argonaute-2 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102089206 protein argonaute-1 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 102084839 EIF4E1B; eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 102095476 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 102095305 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 102095827 UPF1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 102087330 DDX3X; ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 102089980 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102091378 MEX3D; RNA-binding protein MEX3D isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102087723 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102091841 MEX3A; LOW QUALITY PROTEIN: RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102097086 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 102096109 FASTK; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 102093361 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 102095237 LSM14A; protein LSM14 homolog A isoform X1 K18749 LSM14; protein LSM14
E 102094564 YBX1; nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 102087482 LIMD1; LIM domain-containing protein 1 isoform X1 K16682 AJUBA; LIM domain-containing protein
E 102084940 WTIP; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 102087964 C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 110364178 C->U-editing enzyme APOBEC-1-like isoform X1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 102085410 MOV10; putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 102098322 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 102093226 TNPO1; transportin-1 K18752 TNPO1; transportin-1
E 102085693 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 102083881 SMG5; protein SMG5 K11125 SMG5; protein SMG5
E 102093430 SMG6; LOW QUALITY PROTEIN: telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 102094346 SMG7; protein SMG7 isoform X3 K14409 SMG7; protein SMG7
E 102089358 ZFP36L1; LOW QUALITY PROTEIN: mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 102087927 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 102091092 LIN28B; protein lin-28 homolog B isoform X9 K18754 LIN28; protein lin-28
E 102097560 HTT; huntingtin K04533 HD; huntingtin
E 102091182 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8
E 102098384 BICC1; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 102097252 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X6 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102089846 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 102094181 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X4 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 102093856 LARP1B; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 102090943 LARP1; la-related protein 1 K18757 LARP1; la-related protein 1
E 102085007 ATXN2; LOW QUALITY PROTEIN: ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 102093391 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102091292 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 102089540 LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102084488 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102094969 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102090834 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102097075 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102086558 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102089102 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 102097825 KLC1; kinesin light chain 1 isoform X7 K10407 KLC; kinesin light chain
E 102088640 KLC4; kinesin light chain 4 isoform X3 K10407 KLC; kinesin light chain
E 102094589 LOW QUALITY PROTEIN: unconventional myosin-Vb-like K10357 MYO5; myosin V
E 102090369 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 102090187 MYO5C; LOW QUALITY PROTEIN: unconventional myosin-Vc K10357 MYO5; myosin V
E 102091390 MYO5B; unconventional myosin-Vb K10357 MYO5; myosin V
E 102087074 tubulin alpha-5 chain K07374 TUBA; tubulin alpha
E 102087379 TUBA4A; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 102096311 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 102093000 TUBA8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 102093182 tubulin alpha-4 chain K07374 TUBA; tubulin alpha
E 102086223 tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 102088017 tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 102093544 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 102094322 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 102088204 tubulin alpha-1 chain-like K07374 TUBA; tubulin alpha
E 102090088 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102087745 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X7 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102093501 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102097866 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 102088186 GEMIN5; LOW QUALITY PROTEIN: gem-associated protein 5 K13133 GEMIN5; gem associated protein 5
E 102098009 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 102089747 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102097835 TNRC6B; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102094110 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X6 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102093442 CNOT1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102097992 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102090754 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102092282 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102091681 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102084701 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102090532 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102095729 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 102087245 DIS3L2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 102085441 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 102094406 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X2 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 102090707 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 102088978 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 102096627 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 102090493 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 102083651 TOB2; LOW QUALITY PROTEIN: protein Tob2 K14443 TOB; protein Tob/BTG
E 102097396 EIF4ENIF1; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 102095847 PATL1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 102094754 EDC3; enhancer of mRNA-decapping protein 3 isoform X2 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 102086999 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102084676 UPF2; regulator of nonsense transcripts 2 isoform X2 K14327 UPF2; regulator of nonsense transcripts 2
E 102091006 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 102089034 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 102092319 TRIM71; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 102085389 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase isoform X1 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 102091791 ZAR1L; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 102097205 ZAR1; LOW QUALITY PROTEIN: zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 102090267 YTHDF1; YTH domain-containing family protein 1 isoform X2 K20102 YTHDF; YTH domain-containing family protein
E 102094578 YTHDF2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 102096861 YTHDF3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 102094144 TIAL1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 102097438 TIA1; nucleolysin TIA-1 isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 102090631 PABPC1; polyadenylate-binding protein 1 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102084806 PABPC4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102097259 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 102086899 STAU1; LOW QUALITY PROTEIN: double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102090597 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 102085629 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102084750 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 102096597 ELAVL1; ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 102092718 G3BP1; LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 102089908 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 102093900 EIF2A; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 102084399 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 102087762 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 102094675 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 102091405 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 102084947 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 102090052 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 102096464 EIF4G3; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 102097643 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102086308 RPS6KA2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102089715 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102087387 RPS6KA1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 102087492 receptor of activated protein C kinase 1-like K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 102095289 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 102096177 TDRD3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 102094731 LARP4; la-related protein 4 K18763 LARP4; la-related protein 4
E 102096587 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 102091292 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 102089540 LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 102093391 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 102089980 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 102094754 EDC3; enhancer of mRNA-decapping protein 3 isoform X2 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 102086999 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 102095847 PATL1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 102084488 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 102094969 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 102090834 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 102097075 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 102086558 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 102089102 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 102097760 XRN1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 102093706 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D Other 5'-3' decay factors
E 106145844 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 102098741 HELZ; LOW QUALITY PROTEIN: probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 102090958 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 102090145 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 102084243 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 102088153 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 102088762 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 102093818 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 102097144 DIS3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 102096567 DIS3L; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 102094015 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 102094725 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 102085321 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 102090129 DDX60; probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 102085887 PAPD7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 102090287 PAPD5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 102096549 ZCCHC7; LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 102096300 SKIV2L2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 102091314 TTC37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 102097068 WDR61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 102092282 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102091681 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 102093442 CNOT1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 102097992 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 102090754 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X2 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 102084701 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102090532 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 102085009 CNOT9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 102092140 CNOT10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 102085441 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 102094406 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X2 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 102086728 PARN; poly(A)-specific ribonuclease PARN isoform X2 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102087047 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X3 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 102099028 DHX36; ATP-dependent RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 102090707 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 102088978 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 102096627 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 102090493 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 102083651 TOB2; LOW QUALITY PROTEIN: protein Tob2 K14443 TOB; protein Tob/BTG
E 102088785 NOCT; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 102086617 ERI1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 102085682 ERI2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 106145844 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 102087895 PDE12; LOW QUALITY PROTEIN: 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 102084258 IREB2; iron-responsive element-binding protein 2 isoform X2 K22416 IREB2; iron-responsive element-binding protein 2
E 102098741 HELZ; LOW QUALITY PROTEIN: probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 102085308 HELZ2; helicase with zinc finger domain 2 isoform X1 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 102089446 NRDE2; protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 102087898 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 102092367 FOCAD; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 102085741 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102091324 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102098974 ZC3H12B; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 102092549 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 102092129 DROSHA; LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 102085375 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 102092231 ENO2; gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102096283 ENO1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 102085656 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 102089809 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102092803 PFKM; LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 102088918 PFKP; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 102096002 HSPA9; stress-70 protein, mitochondrial isoform X2 K04043 dnaK; molecular chaperone DnaK
E 102090837 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 102090145 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 102090958 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 102088153 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024