+F Repair protein KO
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DNA Repair and Recombination Proteins - Cucurbita maxima (winter squash)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111477932 DNA oxidative demethylase ALKBH2 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 111495379 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 111469160 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111480636 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111481712 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111488366 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111468538 methyl-CpG-binding domain protein 4-like protein isoform X1 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 111489756 N-glycosylase/DNA lyase OGG1 isoform X1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 111490296 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111479404 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111497328 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 111497123 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 111481642 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 111481028 uncharacterized protein LOC111481028 K03504 POLD3; DNA polymerase delta subunit 3
F 111491182 uncharacterized protein LOC111491182 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 111491125 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 111492993 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 111490783 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 111491393 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111500022 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111484515 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111468704 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 111483595 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 111488656 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 111478138 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 111470189 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111476896 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 111483514 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 111466943 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 111490703 poly [ADP-ribose] polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 111497777 poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 111487939 poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 111487851 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 111482038 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 111467562 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 111482316 ubiquitin receptor RAD23b-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 111493081 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 111479749 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 111467761 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111485682 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111465785 RING-box protein 1a-like isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111495542 cullin-4-like K10609 CUL4; cullin 4
F 111490376 cullin-4-like K10609 CUL4; cullin 4
F 111490364 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111495534 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 111484454 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 111484981 uncharacterized protein LOC111484981 K15082 RAD7; DNA repair protein RAD7
F 111484062 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 111500163 DNA-directed RNA polymerase II subunit 1-like K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 111470290 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 111478551 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 111486077 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 111489290 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111478788 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111497005 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111487075 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111490485 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111497988 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111470215 DNA-directed RNA polymerase V subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111488357 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111482872 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111467735 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111487136 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111500232 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111489078 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111481850 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111470753 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111483257 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111470884 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 111492503 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111496538 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111481407 DNA-directed RNA polymerases II, IV and V subunit 11-like K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111493118 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111497917 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111490048 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 111495846 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 111467761 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111485682 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111465785 RING-box protein 1a-like isoform X1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111495542 cullin-4-like K10609 CUL4; cullin 4
F 111490376 cullin-4-like K10609 CUL4; cullin 4
F 111490364 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111495534 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 111496429 DNA excision repair protein ERCC-8-like isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 111491468 protein CHROMATIN REMODELING 8-like K10841 ERCC6; DNA excision repair protein ERCC-6
F 111467020 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 111488590 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 111482102 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 111483253 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 111469016 DNA repair helicase XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 111488815 DNA repair helicase XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 111470852 probable RNA polymerase II transcription factor B subunit 1-1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 111493405 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 111489720 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 111477843 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 111498544 RNA polymerase II transcription factor B subunit 5 isoform X1 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 111485350 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111498202 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111497153 cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 111478859 cyclin-H1-1-like K06634 CCNH; cyclin H
E 111497998 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 111493656 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111498272 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111465201 LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111470404 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111485578 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111476648 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111480784 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111499646 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111498639 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111481797 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 111467887 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 111491052 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111486346 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 111483595 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111488523 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 111482252 cullin-3A-like K03869 CUL3; cullin 3
E 111469519 cullin-3A-like K03869 CUL3; cullin 3
E 111493436 elongin-C-like K03872 ELOC; elongin-C
E 111469518 elongin-C-like K03872 ELOC; elongin-C
E 111468551 uncharacterized protein LOC111468551 K03873 ELOB; elongin-B
E 111479243 uncharacterized protein LOC111479243 K15077 ELA1; elongin-A
E 111479252 uncharacterized protein LOC111479252 K15077 ELA1; elongin-A
E 111469662 transcription elongation factor B polypeptide 3 isoform X1 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111484889 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 111482846 DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 111493803 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
E 111497744 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 111471389 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 111488347 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 111470127 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 111497123 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 111481642 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 111481028 uncharacterized protein LOC111481028 K03504 POLD3; DNA polymerase delta subunit 3
E 111491182 uncharacterized protein LOC111491182 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 111493656 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111498272 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111465201 LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111470404 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111485578 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111476648 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111480784 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111499646 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111498639 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111481797 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 111490698 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 111465064 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 111480296 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E 111489762 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 111497446 uncharacterized protein LOC111497446 K10756 RFC3_5; replication factor C subunit 3/5
E 111478265 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 111487024 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 111472711 uncharacterized protein LOC111472711 K10756 RFC3_5; replication factor C subunit 3/5
E 111474906 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 111491393 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111500022 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111484515 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111490394 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111495297 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111483595 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111485049 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 111476838 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111479648 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 111493152 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 111466809 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 111496720 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 111478687 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 111481237 uncharacterized protein LOC111481237 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 111475444 BRISC and BRCA1-A complex member 2-like K12173 BRE; BRCA1-A complex subunit BRE
E 111480831 BRISC and BRCA1-A complex member 2-like isoform X1 K12173 BRE; BRCA1-A complex subunit BRE
E 111493438 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E 111479591 lys-63-specific deubiquitinase BRCC36-like isoform X1 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 111476374 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 111488182 BRCT domain-containing protein At4g02110 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 111477010 DNA topoisomerase 2-binding protein 1 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 111476838 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111479648 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 111493152 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA complex
E 111481499 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 111484865 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 111484865 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111484351 DNA repair protein RAD51 homolog 2 isoform X1 K10869 RAD51L1; RAD51-like protein 1
E 111472731 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111499870 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 111492982 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 111468643 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 111481079 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 111490480 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111499891 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111478773 protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111484193 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111491051 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 111466807 mediator of RNA polymerase II transcription subunit 34 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111493646 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111465434 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 111483078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111465781 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111466352 ATP-dependent DNA helicase Q-like 5 isoform X1 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 111483078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111465781 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111479340 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111481572 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111485556 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111469342 uncharacterized protein LOC111469342 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 111493656 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111498272 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111465201 LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111470404 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111485578 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 111476648 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111480784 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111499646 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111498639 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111481797 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 111476791 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 111480684 serine/threonine-protein phosphatase PP-X isozyme 2-like isoform X1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 111482606 serine/threonine-protein phosphatase 4 regulatory subunit 2-B-like K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 111498416 serine/threonine-protein phosphatase 4 regulatory subunit 2-A-like isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 111479339 serine/threonine-protein phosphatase 4 regulatory subunit 3A-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111470882 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111494412 serine/threonine-protein phosphatase 4 regulatory subunit 3A-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111499117 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111474296 serine/threonine-protein phosphatase 4 regulatory subunit 3-like K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 111486923 AP-5 complex subunit beta-1 K19022 AP5B1; AP-5 complex subunit beta-1
E 111494526 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 111480560 AP-5 complex subunit zeta-1-like K19025 AP5Z1; AP-5 complex subunit zeta-1
E 111476859 AP-5 complex subunit zeta-1-like K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 111488372 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 111487616 structural maintenance of chromosomes protein 6B-like isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 111490968 non-structural maintenance of chromosomes element 1 homolog isoform X1 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 111480943 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 111467024 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 111485470 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 111477883 crossover junction endonuclease EME1B isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 111488639 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 111495037 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111494033 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111496037 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111481456 structure-specific endonuclease subunit slx1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111492603 uncharacterized protein LOC111492603 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111469571 uncharacterized protein LOC111469571 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111467522 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111494178 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111497504 uncharacterized protein LOC111497504 isoform X1 K19026 SPG11; spatacsin
E 111476590 uncharacterized protein LOC111476590 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 111497133 protein MRG1-like K11339 MORF4L1; mortality factor 4-like protein 1
E 111477251 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 111478141 protein MRG1-like K11339 MORF4L1; mortality factor 4-like protein 1
E 111486312 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 111486931 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 111481893 uncharacterized protein LOC111481893 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 111485693 uncharacterized protein LOC111485693 K27803 HROB; homologous recombination OB-fold protein
E 111498277 probable DNA helicase MCM8 isoform X1 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 111470623 probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 111473470 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 111467224 DNA-dependent metalloprotease WSS1-like isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111476695 uncharacterized protein LOC111476695 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111480590 uncharacterized protein LOC111480590 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111496070 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 111494004 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 111471969 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 111470686 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 111472751 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 111476838 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111479648 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 111491798 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 111470647 DNA repair protein XRCC4 isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 111483514 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 111470189 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111490005 uncharacterized protein LOC111490005 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 111489325 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 111490201 protein MHF1 homolog K11511 APITD1; centromere protein S
E 111484772 protein MHF2 homolog K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 111483078 ATP-dependent DNA helicase Q-like 4A K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111465781 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111479340 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111481572 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111485556 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111469342 uncharacterized protein LOC111469342 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 111481499 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 111476374 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 111492828 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 111484865 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111472731 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111495136 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 111493682 WD repeat-containing protein 48-like K15361 WDR48; WD repeat-containing protein 48
E 111465442 WD repeat-containing protein 48-like isoform X1 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 111466643 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111493717 phytochrome-associated serine/threonine-protein phosphatase-like isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111477833 serine/threonine-protein phosphatase 6 regulatory subunit 2 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111483669 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111491619 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111497180 serine/threonine-protein phosphatase 6 regulatory subunit 1-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 111495498 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 111491195 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 111485049 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 111497124 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 111470994 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 111471029 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 111493549 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 111476778 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111476786 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111467400 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111467401 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111469298 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111487383 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111487499 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111481792 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111487038 ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111498262 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111481801 ubiquitin-conjugating enzyme E2 36-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 111482672 ubiquitin-conjugating enzyme E2 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 111491393 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 111500022 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 111484515 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 111465538 cell cycle checkpoint control protein RAD9A isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 111488042 uncharacterized protein LOC111488042 K10903 HUS1; HUS1 checkpoint protein
D 111491589 uncharacterized protein LOC111491589 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 111477995 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 111465064 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 111480296 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D 111489762 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 111497446 uncharacterized protein LOC111497446 K10756 RFC3_5; replication factor C subunit 3/5
D 111478265 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 111487024 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 111472711 uncharacterized protein LOC111472711 K10756 RFC3_5; replication factor C subunit 3/5
D 111474906 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 111491589 uncharacterized protein LOC111491589 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 111490825 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 111493575 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 111495136 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 111468424 uncharacterized protein LOC111468424 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 111484954 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 111465456 large proline-rich protein bag6-B-like isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 111493619 large proline-rich protein bag6-B-like isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 111494247 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
D 111499290 Golgi to ER traffic protein 4 homolog isoform X1 K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 111486403 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 111497793 serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 111477001 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111482508 14-3-3-like protein GF14 iota isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111492202 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 111492203 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111492208 14-3-3 protein 7-like K06630 YWHAE; 14-3-3 protein epsilon
D 111492811 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111486115 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 111468287 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111492243 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 111495962 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 111481054 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111480761 14-3-3 protein 7-like K06630 YWHAE; 14-3-3 protein epsilon
D 111496503 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111479988 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111497804 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 111494844 uncharacterized protein LOC111494844 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111498885 uncharacterized protein LOC111498885 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111493670 serine/threonine-protein kinase Nek2-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111490704 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111465957 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111483678 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111467187 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111465481 serine/threonine-protein kinase Nek3-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111488269 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111498284 protein downstream neighbor of Son-like isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 111481598 protein downstream neighbor of Son-like isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 111490739 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111483960 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111498131 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 111488625 protein SDE2 homolog K25059 SDE2; replication stress response regulator SDE2
D 111480922 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 111491713 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 111470575 DNA polymerase V K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111482880 DNA-directed primase/polymerase protein-like K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 111492837 DNA ligase 6-like K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111477185 DNA cross-link repair 1A protein isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111499723 protein artemis isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111468195 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 111483632 exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 111492368 endonuclease V isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 111485093 DNA annealing helicase and endonuclease ZRANB3 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 111495151 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111467455 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111478715 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 111469673 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 111479175 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111473208 LOW QUALITY PROTEIN: pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111485381 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 111496543 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 111495390 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 111499045 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 111472824 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111467679 geranyl diphosphate phosphohydrolase-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111491919 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111478750 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111496788 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111489238 ribonucleoside-diphosphate reductase small chain-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 111482520 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111469160 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111480636 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111476532 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111478481 DNA-3-methyladenine glycosylase 1-like K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111480795 uncharacterized protein LOC111480795 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111481712 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111488366 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111476975 uncharacterized protein LOC111476975 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111480412 uncharacterized protein LOC111480412 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111489316 uncharacterized protein LOC111489316 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111499758 uncharacterized protein LOC111499758 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111499759 uncharacterized protein LOC111499759 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111484173 uncharacterized protein LOC111484173 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111497544 uncharacterized protein LOC111497544 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111493133 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 111490296 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111479404 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111471891 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 111476616 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 111483260 DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 111476616 DNA polymerase I A, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
E 111483260 DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CYL43_pgp074 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CYL43_pgp076 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CYL43_pgp075 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CYL43_pgp033 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111490087 uncharacterized protein LOC111490087 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 111495086 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 111485207 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111493837 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 111480803 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 111485207 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111493837 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
E 111480803 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 111479856 uncharacterized protein LOC111479856 K04485 radA; DNA repair protein RadA/Sms
E 111472714 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 111492096 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 111467169 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 111465921 uncharacterized protein LOC111465921 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 111485207 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 111493837 DNA repair protein recA homolog 3, mitochondrial K03553 recA; recombination protein RecA
D 111480803 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 111495086 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 111472824 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111467679 geranyl diphosphate phosphohydrolase-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111491919 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024