+E Ribosome biogenesis KO
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Ribosome Biogenesis - Cyanidioschyzon merolae
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D CYME_CMN074C box C/D snoRNP rRNA methylase component fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D CYME_CMQ185C box C/D snoRNP component Nop56 K14564 NOP56; nucleolar protein 56
D CYME_CMT605C box C/D snoRNP component Nop58 K14565 NOP58; nucleolar protein 58
D CYME_CMP335C box C/D snoRNP and U4 snRNP component Snu13p K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D CYME_CMM044C box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D CYME_CMI184C box H/ACA snoRNP component GAR1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D CYME_CMN132C box H/ACA snoRNP component NHP2 K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D CYME_CMH198C box H/ACA snoRNP component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D CYME_CMR372C hypothetical protein K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D CYME_CMC010C similar to U3 snoRNP component Imp3p K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D CYME_CMQ071C probable U3 snoRNP component Imp4p K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D CYME_CMB019C similar to U3 snoRNP component Mpp10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D CYME_CMR371C similar to rRNA processing protein 7 K14545 RRP7; ribosomal RNA-processing protein 7
D CYME_CMS199C U3 snoRNP component PWP2 K14558 PWP2; periodic tryptophan protein 2
D CYME_CMD173C hypothetical protein K14766 NOP14; nucleolar protein 14
D CYME_CMT432C similar to charged amino acid rich leucine zipper factor-1 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D CYME_CMG184C similar to U3 snoRNP component Utp6p K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D CYME_CMF157C probable U3 snoRNP component Utp7p K14768 UTP7; U3 small nucleolar RNA-associated protein 7
D CYME_CMT211C similar to U3 snoRNP component Utp11p K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D CYME_CME044C unknown WD repeat protein K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D CYME_CMI018C similar to U3 snoRNP component Utp14p K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D CYME_CMQ382C similar to U3 snoRNP component Utp15p K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D CYME_CMT444C hypothetical protein K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D CYME_CMJ206C hypothetical protein K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D CYME_CMP203C hypothetical protein K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D CYME_CMG105C probable WD-repeat membrane protein K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D CYME_CMT453C similar to nucleolar RNA-associated protein NRAP K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D CYME_CML046C hypothetical protein K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D CYME_CMH057C hypothetical protein K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D CYME_CMT080C hypothetical protein K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D CYME_CMT131C probable RNA helicase with DEAD box K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D CYME_CMS416C ATP-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D CYME_CMK083C DEAD box protein K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D CYME_CMC036C similar to ATP-dependent RNA helicase K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D CYME_CMP222C probable ATP-dependent RNA helicase ROK1 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D CYME_CMM048C pre-mRNA splicing factor ATP-dependent RNA helicase PRP43 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D CYME_CMQ331C similar to DEAH-box RNA helicase Dhr1 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
C GTPase
D CYME_CMS060C hypothetical protein K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D CYME_CMT575C similar to RNA 3'->5' exonuclease K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D CYME_CMK205C RNA lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D CYME_CMP128C casein kinase II, alpha subunit K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D CYME_CMM005C probable protein kinase CK2 regulatory subunit CK2B1 K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D CYME_CMC063C probable ribosome biogenesis protein NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D CYME_CMH131C similar to basal transcription factor ABT1 K14785 ESF2; ESF2/ABP1 family protein
D CYME_CMT188C similar to KRR1-interacting protein K14786 KRI1; protein KRI1
D CYME_CMR456C ribosomal RNA assembly protein mis3/dribble/Krr1p K06961 KRR1; ribosomal RNA assembly protein
D CYME_CMO246C probable RNA binding protein Mrd1p K14787 MRD1; multiple RNA-binding domain-containing protein 1
D CYME_CMH278C hypothetical protein K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D CYME_CMP003C hypothetical protein K14788 NOL10; ribosome biogenesis protein ENP2
D CYME_CMT424C hypothetical protein K14790 NOP9; nucleolar protein 9
D CYME_CMT215C hypothetical protein K14791 PWP1; periodic tryptophan protein 1
D CYME_CMQ312C hypothetical protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D CYME_CMO023C similar to rRNA biogenesis protein; rrp5 homolog; multiple S1 rna binding domain protein K14792 RRP5; rRNA biogenesis protein RRP5
D CYME_CMR267C similar to U3 snoRNP-associated 55-kDa protein RRP9 K14793 RRP9; ribosomal RNA-processing protein 9
D CYME_CMK102C hypothetical protein K14795 RRP36; ribosomal RNA-processing protein 36
D CYME_CMI132C U3 snoRNP component Sof1p K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D CYME_CMG167C cell cycle controlling protein kinase RIO K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D CYME_CMN167C RIO-like serine/threonine protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D CYME_CME165C probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D CYME_CMT343C unknown methyl transferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D CYME_CMN180C similar to methyl transferase K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D CYME_CMO109C pre-rRNA processing protein bystin K14797 ENP1; essential nuclear protein 1
D CYME_CMJ120C putative nin one binding protein K11883 NOB1; RNA-binding protein NOB1
D CYME_CMF059C hypothetical protein K11884 PNO1; RNA-binding protein PNO1
D CYME_CMT257C small GTP-binding protein of Ran family K07936 RAN; GTP-binding nuclear protein Ran
D CYME_CMI163C similar to TATA box binding protein (TBP)-associated factor TAF9 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D CYME_CMA015C hypothetical protein K14799 TSR1; pre-rRNA-processing protein TSR1
D CYME_CMJ333C hypothetical protein K14800 TSR2; pre-rRNA-processing protein TSR2
D CYME_CMD016C hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D CYME_CMC016C similar to programmed cell death 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D CYME_CMS276C exportin 1 K14290 XPO1; exportin-1
D CYME_CMO056C probable importin beta gene K14293 KPNB1; importin subunit beta-1
D CYME_CMI255C importin beta-3 subunit K20222 IPO5; importin-5
C Other pre-40S particles
D CYME_CMR306C phospholipid-transporting ATPase IA K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D CYME_CMQ285C probable eukaryotic translation initiation factor eIF-3 subunit J K03245 EIF3J; translation initiation factor 3 subunit J
D CYME_CMI058C ATP-binding cassette, sub-family E, member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D CYME_CMR479C p68 RNA helicase K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D CYME_CMS416C ATP-dependent RNA helicase K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D CYME_CMF033C nucleolar RNA helicase II/Gu K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D CYME_CMO036C probable ATP dependent RNA helicase K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D CYME_CMM329C similar to ATP-dependent RNA helicase K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D CYME_CML137C ATP-dependent RNA helicase K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D CYME_CMO107C ATP-dependent RNA helicase K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D CYME_CML336C similar to RNA helicase K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D CYME_CMA072C probable nuclear exosomal RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D CYME_CMT043C GTP-binding protein of Nug1 family K14538 NUG1; nuclear GTP-binding protein
D CYME_CMT130C GTP-binding protein of Nug1 family K14537 NUG2; nuclear GTP-binding protein
D CYME_CMB146C probable nucleolar GTP-binding protein Nog1 K06943 NOG1; nucleolar GTP-binding protein
D CYME_CMQ345C GTP-binding protein of Nug1 family K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D CYME_CMI098C similar to eukaryotic translation elongation factor 2 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D CYME_CMT315C probable oligoribonuclease, mitochondrial precursor K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CYME_CMR447C deoxyribonuclease K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D CYME_CMQ316C exonuclease K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D CYME_CMS302C 5'->3' exoribonuclease K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E CYME_CMR143C ribonuclease P protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E CYME_CMG096C ribonuclease P protein subunit POP4 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E CYME_CMO008C ribonuclease P protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E CYME_CMM152C ribonuclease P protein subunit P30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
C Kinases
D CYME_CMM180C hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D CYME_CMI264C ATP-binding cassette, sub-family F, member 2 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D CYME_CMO059C unknown heatshock protein K09506 DNAJA5; DnaJ homolog subfamily A member 5
D CYME_CMT351C eukaryotic translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6
D CYME_CMP145C heat shock protein Hsp70, cytosolic K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D CYME_CMB048C 60S acidic ribosomal protein PO K14815 MRT4; mRNA turnover protein 4
D CYME_CMT194C nonsense-mediated mRNA decay protein 3 K07562 NMD3; 60S ribosomal export protein NMD3
D CYME_CMT257C small GTP-binding protein of Ran family K07936 RAN; GTP-binding nuclear protein Ran
D CYME_CMT546C unknown zinc finger protein K14816 REI1; pre-60S factor REI1
D CYME_CMG060C unknown zinc finger protein K14816 REI1; pre-60S factor REI1
D CYME_CMG027C hypothetical protein K14574 SDO1; ribosome maturation protein SDO1
D CYME_CMS276C exportin 1 K14290 XPO1; exportin-1
D CYME_CMO056C probable importin beta gene K14293 KPNB1; importin subunit beta-1
D CYME_CMI255C importin beta-3 subunit K20222 IPO5; importin-5
D CYME_CMN326C similar to MAP kinase phosphatase-1 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
D CYME_CML124C similar to dual-specificity protein phosphatase K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
D CYME_CMP161C similar to dual specificity protein phosphatase K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D CYME_CMK256C hypothetical protein K14829 IPI3; pre-rRNA-processing protein IPI3
D CYME_CMH241C hypothetical protein K16912 LAS1; ribosomal biogenesis protein LAS1
C Ribosome quality control proteins
D CYME_CMS402C hypothetical protein K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D CYME_CMM042C hypothetical protein K24970 TCF25; transcription factor 25
D CYME_CML023C transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D CYME_CMH273C similar to nuclear import protein NPL4 K14015 NPLOC4; nuclear protein localization protein 4
D CYME_CMK008C similar to ubiquitin fusion-degradation protein 1 K14016 UFD1; ubiquitin fusion degradation protein 1
D CYME_CMP293C hypothetical protein K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
C Other pre-60S particles
D CYME_CMS390C probable essential nucleolar protein required for biogenesis of the 60S ribosomal subunit; Brx1p K14820 BRX1; ribosome biogenesis protein BRX1
D CYME_CML111C hypothetical protein K14821 BUD20; bud site selection protein 20
D CYME_CMS356C hypothetical protein K14822 CGR1; rRNA-processing protein CGR1
D CYME_CMD030C hypothetical protein K14823 EBP2; rRNA-processing protein EBP2
D CYME_CMP117C block of proliferation 1 K14824 ERB1; ribosome biogenesis protein ERB1
D CYME_CMT341C similar to RNA binding protein K14831 MAK16; protein MAK16
D CYME_CMC082C CCAAT-box-binding transcription factor K14832 MAK21; ribosome biogenesis protein MAK21
D CYME_CMJ083C similar to midasin Mdn1p K14572 MDN1; midasin
D CYME_CMN108C similar to 60S ribosomal subunit biogenesis protein Nip7p K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D CYME_CMO200C similar to nucleolar ribosome transport complex component Noc2p K14833 NOC2; nucleolar complex protein 2
D CYME_CMR049C similar to nucleolar complex Nop3 K14834 NOC3; nucleolar complex protein 3
D CYME_CMT214C RNA cytosine methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D CYME_CMR019C similar to ribosomal processing, RNA binding, nucleolar protein Nop77 K14573 NOP4; nucleolar protein 4
D CYME_CMO334C similar to nucleolar RNA-binding protein K14837 NOP12; nucleolar protein 12
D CYME_CMI122C similar to RNA-binding protein with RRM K14838 NOP15; nucleolar protein 15
D CYME_CMC134C probable constituent of 66S pre-ribosomal particles Nsa2p K14842 NSA2; ribosome biogenesis protein NSA2
D CYME_CMT105C nucleolar protein pescadillo K14843 PES1; pescadillo
D CYME_CML268C hypothetical protein K14844 PUF6; pumilio homology domain family member 6
D CYME_CMT215C hypothetical protein K14791 PWP1; periodic tryptophan protein 1
D CYME_CMG070C hypothetical protein K14845 RAI1; RAT1-interacting protein
D CYME_CMS124C valosin-containing protein K14571 RIX7; ribosome biogenesis ATPase
D CYME_CML272C hypothetical protein K14846 RPF1; ribosome production factor 1
D CYME_CMQ057C hypothetical protein K14847 RPF2; ribosome production factor 2
D CYME_CMB073C similar to ribosome assembly protein RRB1 K14848 RRB1; ribosome assembly protein RRB1
D CYME_CMO236C hypothetical protein K14849 RRP1; ribosomal RNA-processing protein 1
D CYME_CMF079C hypothetical protein K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D CYME_CMS476C similar to regulator for ribosome biogenesis regulatory protein RRS1 of yeast K14852 RRS1; regulator of ribosome biosynthesis
D CYME_CMM029C notchless K14855 RSA4; ribosome assembly protein 4
D CYME_CMO190C hypothetical protein K14856 SDA1; protein SDA1
D CYME_CMJ252C probable rRNA methyltransferase pmt2 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D CYME_CMQ177C similar to ribosome biogenesis protein SSF1 K14859 SSF1_2; ribosome biogenesis protein SSF1/2
B Other ribosome biogenesis factors
C CYME_CMQ219C probable tRNA/rRNA cytosine-C5-methylase NOL1 K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C CYME_CMH261C similar to ribose methyltransferase K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C CYME_CMT543C similar to rRNA methylase K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C CYME_CMN201C GTP-binding protein of Era family K03595 era; GTPase
C CYME_CMM200C probable DNA binding protein K26736 PA2G4; ERBB-3 binding protein
C CYME_CME151C GTP-binding protein of Nug1 family K19828 MTG1; mitochondrial GTPase 1
C CYME_CMJ037C probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C CYME_CMG146C GTP-binding protein of Obg family K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D CYME_CMQ185C box C/D snoRNP component Nop56 K14564 NOP56; nucleolar protein 56
D CYME_CML317C 60S ribosomal protein L7A K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D CYME_CMM044C box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D CYME_CMH198C box H/ACA snoRNP component Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
D CYME_CMG009C similar to glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CYME_CMS053C hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CYME_CMT518C similar to tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D CYME_CMO211C hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CYME_CMT478C hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
B ribosomal protein modification factors
C CYME_CMQ410C probable 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
B rRNA processing factors
B rRNA helicases
B GTPases
C CYME_CMN201C GTP-binding protein of Era family K03595 era; GTPase
C CYME_CMJ037C probable GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C CYME_CMG146C GTP-binding protein of Obg family K03979 obgE; GTPase [EC:3.6.5.-]
C CYME_CMT373C GTP binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C CYME_CMS217C hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024