+D GENES KO
#
KEGG Orthology (KO) - Candidatus Mikella endobia
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cmik00010]
D PMARG_ME00267 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMARG_ME00332 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PMARG_ME00331 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:cmik00020]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMARG_ME00167 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PMARG_ME00166 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PMARG_ME00332 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PMARG_ME00331 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway
D PMARG_ME00199 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00040 Pentose and glucuronate interconversions
C 00051 Fructose and mannose metabolism
C 00052 Galactose metabolism
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism
C 00520 Amino sugar and nucleotide sugar metabolism
C 00620 Pyruvate metabolism [PATH:cmik00620]
D PMARG_ME00332 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PMARG_ME00331 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMARG_ME00267 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 00630 Glyoxylate and dicarboxylate metabolism
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:cmik00640]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMARG_ME00166 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PMARG_ME00167 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism
C 00660 C5-Branched dibasic acid metabolism [PATH:cmik00660]
D PMARG_ME00166 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PMARG_ME00167 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PMARG_ME00191 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PMARG_ME00192 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PMARG_ME00190 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:cmik00562]
D PMARG_ME00233 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cmik00190]
D PMARG_ME00168 cydA; Cytochrome bd-I ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PMARG_ME00169 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism
C 00910 Nitrogen metabolism
C 00920 Sulfur metabolism
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cmik00061]
D PMARG_ME00308 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D PMARG_ME00306 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMARG_ME00155 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PMARG_ME00307 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMARG_ME00245 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMARG_ME00134 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
C 00564 Glycerophospholipid metabolism
D PMARG_ME00141 cls; Cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism
D PMARG_ME00199 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
C 00240 Pyrimidine metabolism
D PMARG_ME00194 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PMARG_ME00195 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism
D PMARG_ME00194 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PMARG_ME00195 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
C 00260 Glycine, serine and threonine metabolism [PATH:cmik00260]
D PMARG_ME00299 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMARG_ME00140 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PMARG_ME00139 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism
D PMARG_ME00299 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
C 00280 Valine, leucine and isoleucine degradation [PATH:cmik00280]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cmik00290]
D PMARG_ME00191 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PMARG_ME00192 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PMARG_ME00190 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00300 Lysine biosynthesis [PATH:cmik00300]
D PMARG_ME00299 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMARG_ME00196 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00310 Lysine degradation
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00220 Arginine biosynthesis [PATH:cmik00220]
D PMARG_ME00298 argI; Ornithine carbamoyltransferase chain I K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PMARG_ME00194 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PMARG_ME00195 carA; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
C 00330 Arginine and proline metabolism
C 00340 Histidine metabolism
C 00350 Tyrosine metabolism
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cmik00400]
D PMARG_ME00218 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PMARG_ME00165 aroK; Shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PMARG_ME00136 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PMARG_ME00137 trpGD; Bifunctional protein TrpGD K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PMARG_ME00138 trpC; Tryptophan biosynthesis protein TrpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D PMARG_ME00140 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PMARG_ME00139 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:cmik00450]
D PMARG_ME00269 sufS; Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D PMARG_ME00258 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PMARG_ME00263 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
C 00470 D-Amino acid metabolism
C 00480 Glutathione metabolism
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis
C 00550 Peptidoglycan biosynthesis
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cmik00730]
D PMARG_ME00234 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMARG_ME00217 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 00740 Riboflavin metabolism [PATH:cmik00740]
D PMARG_ME00215 ribE; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PMARG_ME00036 ribC; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism
C 00770 Pantothenate and CoA biosynthesis
D PMARG_ME00005 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
C 00780 Biotin metabolism [PATH:cmik00780]
D PMARG_ME00155 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PMARG_ME00307 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMARG_ME00245 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMARG_ME00134 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00785 Lipoic acid metabolism [PATH:cmik00785]
D PMARG_ME00325 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PMARG_ME00326 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMARG_ME00332 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PMARG_ME00331 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00790 Folate biosynthesis
C 00670 One carbon pool by folate
D PMARG_ME00059 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
D PMARG_ME00175 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:cmik00261]
D PMARG_ME00299 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMARG_ME00196 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D PMARG_ME00233 suhB; Inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PMARG_ME00136 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PMARG_ME00137 trpGD; Bifunctional protein TrpGD K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PMARG_ME00306 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMARG_ME00307 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMARG_ME00134 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PMARG_ME00308 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cmik03020]
D PMARG_ME00113 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMARG_ME00112 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMARG_ME00080 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cmik03010]
D PMARG_ME00262 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PMARG_ME00248 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PMARG_ME00099 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PMARG_ME00081 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PMARG_ME00088 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PMARG_ME00220 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PMARG_ME00123 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PMARG_ME00091 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PMARG_ME00284 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PMARG_ME00106 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PMARG_ME00082 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PMARG_ME00124 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PMARG_ME00083 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PMARG_ME00092 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PMARG_ME00050 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PMARG_ME00292 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PMARG_ME00096 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PMARG_ME00221 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PMARG_ME00101 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PMARG_ME00025 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PMARG_ME00151 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PMARG_ME00116 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PMARG_ME00102 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PMARG_ME00105 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PMARG_ME00104 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PMARG_ME00093 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PMARG_ME00090 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PMARG_ME00114 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PMARG_ME00222 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PMARG_ME00115 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PMARG_ME00117 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PMARG_ME00283 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PMARG_ME00095 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PMARG_ME00086 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PMARG_ME00098 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PMARG_ME00079 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PMARG_ME00089 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PMARG_ME00295 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PMARG_ME00277 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PMARG_ME00129 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PMARG_ME00100 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PMARG_ME00103 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PMARG_ME00094 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PMARG_ME00011 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PMARG_ME00130 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PMARG_ME00209 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PMARG_ME00097 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PMARG_ME00087 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PMARG_ME00007 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PMARG_ME00305 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PMARG_ME00210 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PMARG_ME00057 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PMARG_ME00278 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PMARG_ME00084 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PMARG_ME00179 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PMARG_ME00182 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PMARG_ME00183 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cmik00970]
D PMARG_ME00176 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PMARG_ME00181 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PMARG_ME00031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00288 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00226 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00203 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00202 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PMARG_ME00170 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PMARG_ME00303 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PMARG_ME00319 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PMARG_ME00321 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PMARG_ME00061 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PMARG_ME00304 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PMARG_ME00109 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PMARG_ME00225 tRNA-His K14226 tRNA-His; tRNA His
D PMARG_ME00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PMARG_ME00043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00224 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00316 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00054 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PMARG_ME00173 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PMARG_ME00250 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00320 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00154 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00163 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PMARG_ME00010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00223 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00185 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00300 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00108 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00111 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00241 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PMARG_ME00110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PMARG_ME00174 tRNA-Val K14237 tRNA-Val; tRNA Val
D PMARG_ME00266 tRNA-Val K14237 tRNA-Val; tRNA Val
D PMARG_ME00175 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMARG_ME00328 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PMARG_ME00028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMARG_ME00205 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMARG_ME00184 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PMARG_ME00014 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMARG_ME00015 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMARG_ME00280 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMARG_ME00257 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMARG_ME00290 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMARG_ME00263 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMARG_ME00059 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PMARG_ME00297 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMARG_ME00323 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMARG_ME00026 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMARG_ME00281 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMARG_ME00204 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMARG_ME00242 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMARG_ME00236 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMARG_ME00276 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMARG_ME00275 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PMARG_ME00033 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMARG_ME00164 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cmik03060]
D PMARG_ME00085 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PMARG_ME00042 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D PMARG_ME00187 secA; Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cmik04122]
D PMARG_ME00234 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMARG_ME00128 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PMARG_ME00125 tusB; Protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PMARG_ME00126 dsrF; Intracellular sulfur oxidation protein DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PMARG_ME00127 tusD; Sulfurtransferase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PMARG_ME00009 tusE; Sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PMARG_ME00069 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PMARG_ME00217 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cmik03018]
D PMARG_ME00311 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PMARG_ME00075 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMARG_ME00051 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PMARG_ME00052 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMARG_ME00227 rho; hypothetical protein K03628 rho; transcription termination factor Rho
D PMARG_ME00021 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PMARG_ME00063 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMARG_ME00067 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PMARG_ME00146 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cmik03030]
D PMARG_ME00171 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMARG_ME00244 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMARG_ME00291 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMARG_ME00072 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMARG_ME00324 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMARG_ME00296 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PMARG_ME00058 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMARG_ME00239 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PMARG_ME00152 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00172 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cmik03410]
D PMARG_ME00211 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PMARG_ME00143 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cmik03420]
D PMARG_ME00070 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:cmik03430]
D PMARG_ME00016 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PMARG_ME00065 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D PMARG_ME00310 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D PMARG_ME00287 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00244 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMARG_ME00058 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMARG_ME00291 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMARG_ME00324 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMARG_ME00072 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMARG_ME00171 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMARG_ME00296 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cmik03440]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00027 recA; Protein RecA K03553 recA; recombination protein RecA
D PMARG_ME00207 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PMARG_ME00208 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PMARG_ME00206 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PMARG_ME00313 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PMARG_ME00312 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PMARG_ME00314 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PMARG_ME00244 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMARG_ME00058 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMARG_ME00291 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMARG_ME00324 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMARG_ME00072 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMARG_ME00171 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMARG_ME00296 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PMARG_ME00006 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters
D PMARG_ME00260 msbA; Lipid A export ATP-binding/permease protein MsbA K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PMARG_ME00259 cydD; ATP-binding/permease protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:cmik03070]
D PMARG_ME00042 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D PMARG_ME00085 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PMARG_ME00187 secA; Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cmik02020]
D PMARG_ME00029 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
D PMARG_ME00168 cydA; Cytochrome bd-I ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PMARG_ME00169 cydB; Cytochrome bd-I ubiquinol oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cmik02024]
D PMARG_ME00067 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PMARG_ME00136 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PMARG_ME00137 trpGD; Bifunctional protein TrpGD K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D PMARG_ME00042 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D PMARG_ME00085 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D PMARG_ME00187 secA; Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D PMARG_ME00153 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance
C 01502 Vancomycin resistance
C 01503 Cationic antimicrobial peptide (CAMP) resistance
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cmik01000]
C 01001 Protein kinases
C 01009 Protein phosphatases and associated proteins
C 01002 Peptidases and inhibitors [BR:cmik01002]
D PMARG_ME00249 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PMARG_ME00041 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMARG_ME00019 clpP; ATP-dependent Clp protease proteolytic subunit precursor K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PMARG_ME00017 lon; Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
C 01003 Glycosyltransferases
C 01005 Lipopolysaccharide biosynthesis proteins
C 01011 Peptidoglycan biosynthesis and degradation proteins
C 01004 Lipid biosynthesis proteins [BR:cmik01004]
D PMARG_ME00306 fabD; Malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMARG_ME00155 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D PMARG_ME00307 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMARG_ME00245 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMARG_ME00134 fabI; Enoyl-[acyl-carrier-protein] reductase [NADH] FabI K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cmik01006]
D PMARG_ME00066 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:cmik01007]
D PMARG_ME00175 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMARG_ME00328 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PMARG_ME00033 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMARG_ME00164 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PMARG_ME00290 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMARG_ME00204 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMARG_ME00263 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMARG_ME00026 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMARG_ME00297 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMARG_ME00323 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMARG_ME00281 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMARG_ME00205 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMARG_ME00184 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PMARG_ME00236 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMARG_ME00014 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMARG_ME00015 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMARG_ME00257 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMARG_ME00242 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMARG_ME00280 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMARG_ME00028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMARG_ME00276 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMARG_ME00275 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cmik03000]
D PMARG_ME00219 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PMARG_ME00229 hypothetical protein K07735 algH; putative transcriptional regulator
D PMARG_ME00147 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:cmik03021]
D PMARG_ME00080 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PMARG_ME00113 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMARG_ME00112 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMARG_ME00153 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D PMARG_ME00256 rpoH; RNA polymerase sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D PMARG_ME00045 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D PMARG_ME00216 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D PMARG_ME00118 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PMARG_ME00147 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PMARG_ME00039 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D PMARG_ME00227 rho; hypothetical protein K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cmik03019]
D PMARG_ME00075 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMARG_ME00003 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMARG_ME00052 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMARG_ME00051 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PMARG_ME00227 rho; hypothetical protein K03628 rho; transcription termination factor Rho
D PMARG_ME00021 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PMARG_ME00063 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMARG_ME00067 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PMARG_ME00146 pcnB; Poly(A) polymerase I precursor K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PMARG_ME00311 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D PMARG_ME00029 csrA; Carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:cmik03011]
D PMARG_ME00262 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PMARG_ME00248 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PMARG_ME00099 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PMARG_ME00081 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PMARG_ME00088 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PMARG_ME00220 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PMARG_ME00123 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PMARG_ME00091 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PMARG_ME00284 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PMARG_ME00106 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PMARG_ME00082 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PMARG_ME00124 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PMARG_ME00083 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PMARG_ME00092 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PMARG_ME00050 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PMARG_ME00292 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PMARG_ME00096 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PMARG_ME00221 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PMARG_ME00101 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PMARG_ME00025 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PMARG_ME00151 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PMARG_ME00116 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PMARG_ME00102 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PMARG_ME00105 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PMARG_ME00104 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PMARG_ME00093 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PMARG_ME00090 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PMARG_ME00222 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PMARG_ME00115 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PMARG_ME00117 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PMARG_ME00114 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PMARG_ME00283 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PMARG_ME00095 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PMARG_ME00086 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PMARG_ME00098 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PMARG_ME00079 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PMARG_ME00089 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PMARG_ME00295 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PMARG_ME00277 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PMARG_ME00129 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PMARG_ME00100 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PMARG_ME00103 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PMARG_ME00094 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PMARG_ME00130 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PMARG_ME00209 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PMARG_ME00097 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PMARG_ME00087 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PMARG_ME00007 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PMARG_ME00305 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PMARG_ME00210 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PMARG_ME00057 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PMARG_ME00278 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PMARG_ME00084 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D PMARG_ME00011 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PMARG_ME00183 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PMARG_ME00179 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PMARG_ME00182 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cmik03009]
D PMARG_ME00003 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMARG_ME00004 era; GTPase Era K03595 era; GTPase
D PMARG_ME00131 obgE; GTPase ObgE/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D PMARG_ME00147 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D PMARG_ME00045 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D PMARG_ME00216 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D PMARG_ME00118 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D PMARG_ME00193 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PMARG_ME00255 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PMARG_ME00189 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PMARG_ME00285 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PMARG_ME00068 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PMARG_ME00040 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PMARG_ME00235 rlmN; Dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PMARG_ME00135 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PMARG_ME00074 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PMARG_ME00177 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PMARG_ME00293 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D PMARG_ME00156 prmB; 50S ribosomal protein L3 glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D PMARG_ME00075 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMARG_ME00230 yqgF; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PMARG_ME00052 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMARG_ME00238 der; GTPase Der K03977 engA; GTPase
D PMARG_ME00047 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PMARG_ME00044 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D PMARG_ME00322 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D PMARG_ME00201 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:cmik03016]
D PMARG_ME00149 cca; Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PMARG_ME00175 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMARG_ME00242 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMARG_ME00026 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMARG_ME00323 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMARG_ME00263 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMARG_ME00328 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PMARG_ME00204 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMARG_ME00281 lysS; Lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMARG_ME00205 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMARG_ME00028 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMARG_ME00184 asnS; Asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PMARG_ME00280 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMARG_ME00257 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMARG_ME00290 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMARG_ME00297 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMARG_ME00236 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMARG_ME00276 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMARG_ME00275 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PMARG_ME00033 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMARG_ME00164 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PMARG_ME00315 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PMARG_ME00048 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PMARG_ME00234 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMARG_ME00066 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PMARG_ME00055 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PMARG_ME00073 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PMARG_ME00056 rnpA; Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PMARG_ME00286 RNaseP_bact_a K01978 rnpB; M1 RNA
D PMARG_ME00034 rnt; Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PMARG_ME00014 glyQ; Glycine--tRNA ligase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMARG_ME00015 glyS; Glycine--tRNA ligase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMARG_ME00160 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PMARG_ME00294 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PMARG_ME00069 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PMARG_ME00128 tusA; Sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PMARG_ME00125 tusB; Protein TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PMARG_ME00126 dsrF; Intracellular sulfur oxidation protein DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PMARG_ME00127 tusD; Sulfurtransferase TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PMARG_ME00009 tusE; Sulfurtransferase TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PMARG_ME00186 ygfZ; tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D PMARG_ME00214 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PMARG_ME00217 thiI; tRNA sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PMARG_ME00243 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PMARG_ME00145 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PMARG_ME00150 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PMARG_ME00051 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cmik03012]
D PMARG_ME00046 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PMARG_ME00279 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PMARG_ME00247 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D PMARG_ME00107 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMARG_ME00122 fusA; Elongation factor G K02355 fusA; elongation factor G
D PMARG_ME00198 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PMARG_ME00246 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D PMARG_ME00197 prmC; Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PMARG_ME00200 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PMARG_ME00261 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PMARG_ME00062 efp; Elongation factor P K02356 efp; elongation factor P
D PMARG_ME00282 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:cmik03110]
D PMARG_ME00178 clpB; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PMARG_ME00018 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PMARG_ME00021 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PMARG_ME00063 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMARG_ME00024 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PMARG_ME00157 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE
D PMARG_ME00012 ibpA; Small heat shock protein IbpA K04080 ibpA; molecular chaperone IbpA
D PMARG_ME00013 ibpB; Small heat shock protein IbpB K04081 ibpB; molecular chaperone IbpB
D PMARG_ME00064 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D PMARG_ME00041 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMARG_ME00228 trxA; Thioredoxin-1 K03671 TXN; thioredoxin
D PMARG_ME00037 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
D PMARG_ME00144 dsbB; Disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
C 04131 Membrane trafficking [BR:cmik04131]
D PMARG_ME00267 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:cmik03032]
D PMARG_ME00172 rnhA; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PMARG_ME00239 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PMARG_ME00152 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00244 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMARG_ME00058 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMARG_ME00296 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PMARG_ME00324 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMARG_ME00072 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMARG_ME00171 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMARG_ME00291 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PMARG_ME00317 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMARG_ME00265 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
C 03036 Chromosome and associated proteins [BR:cmik03036]
D PMARG_ME00003 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMARG_ME00142 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D PMARG_ME00219 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PMARG_ME00067 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D PMARG_ME00073 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PMARG_ME00077 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:cmik03400]
D PMARG_ME00211 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PMARG_ME00143 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PMARG_ME00309 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PMARG_ME00113 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMARG_ME00112 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMARG_ME00080 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PMARG_ME00070 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PMARG_ME00016 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D PMARG_ME00065 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D PMARG_ME00310 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D PMARG_ME00287 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D PMARG_ME00244 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMARG_ME00058 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMARG_ME00296 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D PMARG_ME00324 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMARG_ME00072 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMARG_ME00171 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMARG_ME00291 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00313 recB; RecBCD enzyme subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PMARG_ME00312 recC; RecBCD enzyme subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PMARG_ME00314 recD; RecBCD enzyme subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PMARG_ME00027 recA; Protein RecA K03553 recA; recombination protein RecA
D PMARG_ME00207 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PMARG_ME00208 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PMARG_ME00206 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PMARG_ME00006 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PMARG_ME00053 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D PMARG_ME00317 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMARG_ME00265 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PMARG_ME00219 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PMARG_ME00142 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
C 03029 Mitochondrial biogenesis [BR:cmik03029]
D PMARG_ME00046 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PMARG_ME00279 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PMARG_ME00247 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D PMARG_ME00107 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMARG_ME00122 fusA; Elongation factor G K02355 fusA; elongation factor G
D PMARG_ME00004 era; GTPase Era K03595 era; GTPase
D PMARG_ME00033 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMARG_ME00323 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMARG_ME00205 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMARG_ME00204 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMARG_ME00240 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMARG_ME00021 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PMARG_ME00157 grpE; Protein GrpE K03687 GRPE; molecular chaperone GrpE
D PMARG_ME00063 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMARG_ME00064 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D PMARG_ME00024 dnaJ; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PMARG_ME00234 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMARG_ME00037 grxD; Glutaredoxin-4 K07390 grxD; monothiol glutaredoxin
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cmik02000]
D PMARG_ME00260 msbA; Lipid A export ATP-binding/permease protein MsbA K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PMARG_ME00259 cydD; ATP-binding/permease protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D PMARG_ME00271 sufC; putative ATP-dependent transporter SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
C 02044 Secretion system [BR:cmik02044]
D PMARG_ME00231 YGGT family protein K02221 yggT; YggT family protein
D PMARG_ME00187 secA; Protein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PMARG_ME00042 secG; Protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D PMARG_ME00085 secY; Protein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
C 02042 Bacterial toxins
C 02022 Two-component system
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins
C 04147 Exosome [BR:cmik04147]
D PMARG_ME00267 pykF; Pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMARG_ME00213 tsaA; putative peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D PMARG_ME00063 groL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMARG_ME00021 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PMARG_ME00107 tufA_1; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMARG_ME00330 lpdA; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 02048 Prokaryotic defense system [BR:cmik02048]
D PMARG_ME00175 gltX; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMARG_ME00234 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cmik03100]
D PMARG_ME00176 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PMARG_ME00181 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PMARG_ME00031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00288 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00226 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00203 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PMARG_ME00202 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PMARG_ME00170 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PMARG_ME00303 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PMARG_ME00319 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PMARG_ME00321 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PMARG_ME00061 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PMARG_ME00304 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PMARG_ME00109 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PMARG_ME00225 tRNA-His K14226 tRNA-His; tRNA His
D PMARG_ME00180 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PMARG_ME00043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00318 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00224 tRNA-Ser K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00302 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00316 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PMARG_ME00054 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PMARG_ME00173 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PMARG_ME00250 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00320 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00154 tRNA-Met K14230 tRNA-Met; tRNA Met
D PMARG_ME00163 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PMARG_ME00010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00223 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PMARG_ME00030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00008 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00185 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00300 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PMARG_ME00020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00108 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00111 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PMARG_ME00241 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PMARG_ME00110 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PMARG_ME00174 tRNA-Val K14237 tRNA-Val; tRNA Val
D PMARG_ME00266 tRNA-Val K14237 tRNA-Val; tRNA Val
D PMARG_ME00179 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PMARG_ME00182 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PMARG_ME00183 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PMARG_ME00286 RNaseP_bact_a K01978 rnpB; M1 RNA
D PMARG_ME00159 ssrA; transfer-messenger RNA, SsrA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PMARG_ME00301 fpr; Ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D PMARG_ME00212 nucM; Nuclease NucM precursor K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D PMARG_ME00071 ycfH; putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PMARG_ME00060 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D PMARG_ME00327 fldA; Flavodoxin K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PMARG_ME00132 cspC; Cold shock-like protein CspC K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D PMARG_ME00158 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D PMARG_ME00329 nfuA; Fe/S biogenesis protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
C 99979 Viral proteins
C 99998 Others
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D PMARG_ME00078 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
C 99992 Structural proteins
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PMARG_ME00148 erpA; Iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D PMARG_ME00273 iscA; Iron-binding protein IscA K05997 sufA; Fe-S cluster assembly protein SufA
D PMARG_ME00272 sufB; FeS cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D PMARG_ME00270 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D PMARG_ME00268 sufE; Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
C 99997 Function unknown
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2024