+F Repair protein KO
#
DNA Repair and Recombination Proteins - Cupriavidus nantongensis
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D A2G96_30970 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D A2G96_04110 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D A2G96_18310 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E A2G96_20420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E A2G96_03025 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E A2G96_06760 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E A2G96_26365 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D A2G96_20120 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A2G96_19100 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D A2G96_30970 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D A2G96_04110 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D A2G96_27290 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D A2G96_18310 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D A2G96_30040 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E A2G96_20420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E A2G96_04260 hydroxyacid dehydrogenase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E A2G96_14205 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E A2G96_07125 Fe-S cluster assembly protein HesB K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E A2G96_30975 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E A2G96_03025 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E A2G96_00210 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E A2G96_03015 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E A2G96_06760 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E A2G96_29655 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E A2G96_02200 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E A2G96_07520 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E A2G96_17350 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E A2G96_25505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E A2G96_03130 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E A2G96_06785 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E A2G96_15965 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E A2G96_17375 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A2G96_02620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A2G96_17350 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F A2G96_21325 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F A2G96_21320 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F A2G96_21130 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F A2G96_05535 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F A2G96_10350 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E A2G96_07065 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E A2G96_19200 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E A2G96_04200 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E A2G96_17315 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E A2G96_05250 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E A2G96_01260 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E A2G96_18680 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E A2G96_19545 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E A2G96_10925 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E A2G96_15720 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E A2G96_23810 ethanolamine utilization protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E A2G96_15540 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E A2G96_15390 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E A2G96_17375 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A2G96_02620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E A2G96_32000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A2G96_03140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A2G96_08140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A2G96_08475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A2G96_09210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E A2G96_12775 hypothetical protein K03111 ssb; single-strand DNA-binding protein
E A2G96_16805 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E A2G96_31905 DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E A2G96_07705 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
E A2G96_03660 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E A2G96_03655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E A2G96_03670 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E A2G96_00580 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E A2G96_14845 primosomal replication protein N K02686 priB; primosomal replication protein N
E A2G96_21595 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E A2G96_21590 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
E A2G96_14185 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E A2G96_19415 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E A2G96_15995 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E A2G96_15380 recR; recombination protein RecR K06187 recR; recombination protein RecR
E A2G96_06680 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E A2G96_19785 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E A2G96_03660 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E A2G96_03655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E A2G96_03670 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E A2G96_15405 ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E A2G96_15410 recombinase RecB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E A2G96_21595 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E A2G96_21590 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E A2G96_05335 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E A2G96_22000 Ku protein K10979 ku; DNA end-binding protein Ku
E A2G96_29890 Ku protein K10979 ku; DNA end-binding protein Ku
E A2G96_22005 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E A2G96_29875 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F A2G96_05050 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F A2G96_01265 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F A2G96_29805 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F A2G96_09845 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F A2G96_00835 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F A2G96_09450 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F A2G96_15995 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F A2G96_15380 recR; recombination protein RecR K06187 recR; recombination protein RecR
F A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F A2G96_03680 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F A2G96_07415 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F A2G96_05100 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F A2G96_21315 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F A2G96_25505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F A2G96_03130 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F A2G96_06785 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F A2G96_21740 endonuclease K03746 hns; DNA-binding protein H-NS
F A2G96_29435 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F A2G96_09545 hypothetical protein K03746 hns; DNA-binding protein H-NS
F A2G96_12395 hypothetical protein K03746 hns; DNA-binding protein H-NS
F A2G96_13250 DNA-binding protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D A2G96_00845 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA
D A2G96_14860 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D A2G96_06680 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D A2G96_11205 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D A2G96_27495 damage-inducible protein K14160 imuA; protein ImuA
D A2G96_27490 nucleotidyltransferase K14161 imuB; protein ImuB
D A2G96_27485 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D A2G96_32000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A2G96_03140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A2G96_08140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A2G96_08475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A2G96_09210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D A2G96_12775 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D A2G96_03890 RecX family transcriptional regulator K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D A2G96_00510 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D A2G96_10235 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D A2G96_24545 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D A2G96_20120 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D A2G96_19100 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D A2G96_19960 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D A2G96_15395 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D A2G96_19950 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024