+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cupriavidus nantongensis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D A2G96_30970 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A2G96_04110 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A2G96_18310 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E A2G96_20420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A2G96_03025 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A2G96_06760 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E A2G96_26365 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D A2G96_20120 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A2G96_19100 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D A2G96_30970 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A2G96_04110 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D A2G96_27290 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D A2G96_18310 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D A2G96_30040 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E A2G96_20420 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A2G96_04260 hydroxyacid dehydrogenase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E A2G96_14205 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E A2G96_07125 Fe-S cluster assembly protein HesB K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E A2G96_30975 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E A2G96_03025 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A2G96_00210 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E A2G96_03015 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E A2G96_06760 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E A2G96_29655 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E A2G96_02200 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E A2G96_07520 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E A2G96_17350 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E A2G96_25505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E A2G96_03130 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E A2G96_06785 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E A2G96_15965 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E A2G96_17375 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A2G96_02620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A2G96_17350 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F A2G96_21325 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F A2G96_21320 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F A2G96_21130 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F A2G96_05535 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F A2G96_10350 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E A2G96_07065 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E A2G96_19200 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E A2G96_04200 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E A2G96_17315 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E A2G96_05250 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E A2G96_01260 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E A2G96_18680 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E A2G96_19545 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E A2G96_10925 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E A2G96_15720 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A2G96_23810 ethanolamine utilization protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A2G96_15540 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A2G96_15390 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E A2G96_17375 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A2G96_02620 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A2G96_32000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A2G96_03140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A2G96_08140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A2G96_08475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A2G96_09210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A2G96_12775 hypothetical protein K03111 ssb; single-strand DNA-binding protein E A2G96_16805 restriction endonuclease subunit M K06223 dam; DNA adenine methylase [EC:2.1.1.72] E A2G96_31905 DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E A2G96_07705 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E A2G96_03660 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A2G96_03655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A2G96_03670 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E A2G96_00580 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E A2G96_14845 primosomal replication protein N K02686 priB; primosomal replication protein N E A2G96_21595 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E A2G96_21590 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E A2G96_14185 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E A2G96_19415 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E A2G96_15995 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E A2G96_15380 recR; recombination protein RecR K06187 recR; recombination protein RecR E A2G96_06680 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E A2G96_19785 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC E A2G96_03660 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A2G96_03655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A2G96_03670 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E A2G96_15405 ATP-dependent exonuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E A2G96_15410 recombinase RecB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E A2G96_21595 DNA repair exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E A2G96_21590 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E A2G96_05335 ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E A2G96_22000 Ku protein K10979 ku; DNA end-binding protein Ku E A2G96_29890 Ku protein K10979 ku; DNA end-binding protein Ku E A2G96_22005 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E A2G96_29875 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F A2G96_05050 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F A2G96_01265 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F A2G96_29805 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F A2G96_09845 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F A2G96_00835 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F A2G96_09450 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F A2G96_06875 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F A2G96_15995 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F A2G96_15380 recR; recombination protein RecR K06187 recR; recombination protein RecR F A2G96_13985 ligA; DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F A2G96_03680 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F A2G96_07415 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F A2G96_05100 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F A2G96_21315 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F A2G96_25505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F A2G96_03130 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F A2G96_06785 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F A2G96_21740 endonuclease K03746 hns; DNA-binding protein H-NS F A2G96_29435 DNA-binding protein K03746 hns; DNA-binding protein H-NS F A2G96_09545 hypothetical protein K03746 hns; DNA-binding protein H-NS F A2G96_12395 hypothetical protein K03746 hns; DNA-binding protein H-NS F A2G96_13250 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D A2G96_00845 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D A2G96_03885 recA; DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D A2G96_14860 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D A2G96_06680 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D A2G96_11205 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D A2G96_27495 damage-inducible protein K14160 imuA; protein ImuA D A2G96_27490 nucleotidyltransferase K14161 imuB; protein ImuB D A2G96_27485 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D A2G96_32000 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A2G96_03140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A2G96_08140 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A2G96_08475 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A2G96_09210 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A2G96_12775 hypothetical protein K03111 ssb; single-strand DNA-binding protein D A2G96_03890 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D A2G96_00510 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D A2G96_10235 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D A2G96_24545 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D A2G96_20120 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A2G96_19100 aminotransferase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D A2G96_19960 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A2G96_15395 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A2G96_19950 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024