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Transfer RNA Biogenesis - Cryptococcus neoformans var. neoformans B-3501A
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
D CNBH1010 hypothetical protein K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
D CNBK0950 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D CNBC2650 hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D CNBL0670 hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D CNBF4610 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CNBE3310 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CNBA1710 hypothetical protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D CNBB2820 hypothetical protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
D CNBC1360 hypothetical protein K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
D CNBC5490 hypothetical protein K15323 TSEN34; tRNA-splicing endonuclease subunit Sen34 [EC:4.6.1.16]
D CNBK2920 hypothetical protein K15326 TSEN54; tRNA-splicing endonuclease subunit Sen54
C tRNA splicing ligase complex
C Other tRNA splicing factors
D CNBE0230 hypothetical protein K10669 TRPT1; 2'-phosphotransferase [EC:2.7.1.160]
D CNBD2650 hypothetical protein K14679 TRL1; tRNA ligase [EC:6.5.1.3]
B tRNA transport factors
C tRNA export factors
D CNBE2910 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
D CNBE2830 hypothetical protein K14288 XPOT; exportin-T
D CNBG3120 hypothetical protein K14290 XPO1; exportin-1
D CNBM1160 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
D CNBH3150 hypothetical protein K08876 SCYL1; SCY1-like protein 1
D CNBB0960 hypothetical protein K24887 GTPBP1; GTP-binding protein 1
C tRNA import factors
D CNBN0150 hypothetical protein K15436 TRPO3; transportin-3
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CNBF4640 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CNBK2470 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CNBB0150 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CNBA2140 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CNBN1610 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CNBM1150 hypothetical protein K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CNBA0050 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CNBD2070 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CNBA0720 hypothetical protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CNBG3480 hypothetical protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CNBH3030 hypothetical protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CNBD0130 hypothetical protein K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CNBK1200 hypothetical protein K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CNBF3180 hypothetical protein K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
C Other AARSs
D CNBF2180 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CNBA4150 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CNBE1330 hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CNBD2410 hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CNBF3810 hypothetical protein K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CNBB5220 hypothetical protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CNBD0870 hypothetical protein K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CNBB5310 hypothetical protein K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CNBB4810 hypothetical protein K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CNBB3840 hypothetical protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CNBC0810 hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CNBJ1210 hypothetical protein K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CNBC0600 hypothetical protein K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CNBC3360 hypothetical protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CNBJ0260 hypothetical protein K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CNBA1270 hypothetical protein K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CNBJ3070 hypothetical protein K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D CNBB3530 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D CNBG4380 hypothetical protein K24278 ERDS; ergosteryl-3beta-O-L-aspartate synthase [EC:6.1.1.12 2.3.2.37]
D CNBG4390 hypothetical protein K24279 ERDH; ergosteryl-3beta-O-L-aspartate hydrolase [EC:3.1.1.121]
B tRNA modification factors
C Deaminases
D CNBG0980 hypothetical protein K15440 TAD1; tRNA-specific adenosine deaminase 1 [EC:3.5.4.34]
D CNBF4140 hypothetical protein K15441 TAD2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
D CNBC2910 hypothetical protein K15442 TAD3; tRNA-specific adenosine deaminase 3
C Dihydorouridine synthases
D CNBA3960 hypothetical protein K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D CNBE2890 hypothetical protein K05543 DUS2; tRNA-dihydrouridine synthase 2 [EC:1.3.1.91]
D CNBH0060 hypothetical protein K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
D CNBA2100 hypothetical protein K05545 DUS4; tRNA-dihydrouridine synthase 4 [EC:1.3.1.90]
C Methylthiotransferase
C Methyltransferases
D CNBA0740 hypothetical protein K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D CNBJ0170 hypothetical protein K15331 TRMT2B; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CNBD6080 hypothetical protein K15334 NCL1; multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202]
D CNBH1780 hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CNBL1390 hypothetical protein K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D CNBC5380 hypothetical protein K03256 TRM6; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
D CNBK3020 hypothetical protein K14864 FTSJ1; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205]
D CNBB5420 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CNBG4490 hypothetical protein K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D CNBC2000 hypothetical protein K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D CNBK2760 hypothetical protein K15430 TRM11; tRNA (guanine10-N2)-methyltransferase [EC:2.1.1.214]
D CNBG1180 hypothetical protein K15447 TRM44; tRNASer (uridine44-2'-O)-methyltransferase [EC:2.1.1.211]
D CNBG2390 hypothetical protein K15443 TRM82; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
D CNBC5840 hypothetical protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
D CNBJ1410 hypothetical protein K17053 ABP140; tRNAThr (cytosine32-N3)-methyltransferase [EC:2.1.1.268]
C Psudouridine synthases
D CNBN0810 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CNBH0640 hypothetical protein K01855 PUS3; tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
D CNBC5900 hypothetical protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CNBI3170 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D CNBM0130 hypothetical protein K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14]
D CNBE4140 hypothetical protein K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D CNBC1050 hypothetical protein K14169 CTU2; cytoplasmic tRNA 2-thiolation protein 2
D CNBD0800 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CNBI1480 hypothetical protein K12161 URM1; ubiquitin related modifier 1
D CNBD5160 hypothetical protein K11996 MOCS3; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11]
C KEOPS/EKC complex
D CNBK1570 hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D CNBF4560 hypothetical protein K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D CNBA3260 hypothetical protein K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D CNBC0450 hypothetical protein K15901 TPRKB; EKC/KEOPS complex subunit TPRKB/CGI121
D CNBJ2470 hypothetical protein K15902 LAGE3; EKC/KEOPS complex subunit LAGE3/PCC1
C Elongator complex
D CNBF2080 hypothetical protein K11373 ELP1; elongator complex protein 1
D CNBB1480 hypothetical protein K11374 ELP2; elongator complex protein 2
D CNBK2550 hypothetical protein K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D CNBL0390 hypothetical protein K11375 ELP4; elongator complex protein 4
C Elongator related proteins
D CNBA3630 hypothetical protein K15455 DPH3; diphthamide biosynthesis protein 3
D CNBK1460 hypothetical protein K15456 KTI12; protein KTI12
D CNBH2590 hypothetical protein K15462 KTI13; protein ATS1
D CNBD2010 hypothetical protein K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
D CNBG2940 hypothetical protein K15458 SAP185_190; SIT4-associating protein SAP185/190
C Other tRNA modification factors
D CNBB1350 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CNBA3320 hypothetical protein K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CNBI1410 hypothetical protein K15463 RIT1; tRNA A64-2'-O-ribosylphosphate transferase [EC:2.4.2.-]
D CNBG2780 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D CNBC4410 hypothetical protein K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D CNBJ2570 hypothetical protein K00685 ATE1; arginyl-tRNA---protein transferase [EC:2.3.2.8]
B tRNA degradation factors
C TRAMP complex
D CNBK1280 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D CNBA2170 hypothetical protein K12597 AIR1_2; protein AIR1/2
D CNBD1250 hypothetical protein K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C Rapid tRNA decay (RTD) pathway factors
D CNBE3620 hypothetical protein K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D CNBF2890 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D CNBA3110 hypothetical protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D CNBF4610 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CNBE3310 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CNBI2220 hypothetical protein K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D CNBA1710 hypothetical protein K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D CNBB2820 hypothetical protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D CNBM1150 hypothetical protein K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CNBB0150 hypothetical protein K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D CNBJ0260 hypothetical protein K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CNBA1270 hypothetical protein K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CNBJ3070 hypothetical protein K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CNBB5220 hypothetical protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CNBA2140 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CNBN1610 hypothetical protein K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CNBH3030 hypothetical protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CNBF2180 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CNBA4150 hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CNBB3840 hypothetical protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CNBA0050 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CNBD2070 hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CNBD0870 hypothetical protein K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CNBB5310 hypothetical protein K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CNBK1200 hypothetical protein K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CNBB4810 hypothetical protein K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CNBF4640 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CNBK2470 hypothetical protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CNBA0720 hypothetical protein K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CNBG3480 hypothetical protein K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CNBJ1210 hypothetical protein K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CNBC0600 hypothetical protein K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CNBC3360 hypothetical protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CNBC0810 hypothetical protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CNBE1330 hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CNBD2410 hypothetical protein K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D CNBB3530 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D CNBB5420 hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D CNBN0810 hypothetical protein K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CNBC5900 hypothetical protein K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CNBI3170 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D CNBD0800 hypothetical protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D CNBK1570 hypothetical protein K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D CNBF4560 hypothetical protein K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D CNBA3260 hypothetical protein K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Other tRNA modification factors
D CNBA3320 hypothetical protein K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CNBB1350 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CNBN0840 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024