+E Transcription factors KO
#
Transcription Factors - Clostridium neonatale
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D CNEO_2254 Putative transcriptional regulator, AraC-type K13653 K13653; AraC family transcriptional regulator
C LysR family
C DeoR family
D CNEO_1351 Putative transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D CNEO_4632 Transcriptional regulator, DeoR-type K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D CNEO_1537 Putative transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D CNEO_2397 fruR; PTS fructose transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D CNEO_0581 spoIIID; Transcriptional regulator (stage III sporulation) K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D CNEO_1138 Putative transcripitonal regulator, DeoR-Type K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D CNEO_3753 ccpN; Transcriptional repressor K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D CNEO_3967 ccpA; Putative catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_3974 Putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_4018 Putative transcriptional regulator, LacI-type K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_4106 Putative transcriptional regulator, LacI-type K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_0082 ccpA; Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_1182 Putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_1383 Putative transcriptional regulator, LacI-type K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_2560 Putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_2776 Putative sugar operon transcriptional regulator, LacI-type K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CNEO_4567 scrR; Transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D CNEO_1442 scrR; Transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D CNEO_1448 Putative transcriptional regulator, LacI-type K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D CNEO_4000 araR; Arabinose operon transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D CNEO_2479 treR; Trehalose operon transcriptional repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D CNEO_4014 Putative transcriptional regulator K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D CNEO_4572 Putative transcriptional regulator K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D CNEO_0311 Putative transcriptional regulator AgaR K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CNEO_1380 Putative transcriptional regulator, GntR-type K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CNEO_1177 Putative transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CNEO_2615 Putative transcriptional regulator, LutR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CNEO_2147 Putative transcriptional regulator K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D CNEO_0891 Putative transcriptional regulator, TetR-type K09017 rutR; TetR/AcrR family transcriptional regulator
D CNEO_2780 Putative transcriptional regulator, TetR-type K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D CNEO_3505 asnC; Transcription regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D CNEO_3024 Putative transcriptional regulator, AsnC-type K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CNEO_1211 Putative transcriptional regulator, AsnC-type K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D CNEO_1346 Putative tanscriptional regulator, MarR-type HTH domain K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D CNEO_3180 Putative transcriptional regulator, MerR-type K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D CNEO_3430 Transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CNEO_1814 perR; Peroxide stress response transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D CNEO_0948 Putative trranscriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D CNEO_3074 Putative regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CNEO_1238 Putative regulator, cyclic nucleotide-binding domain K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CNEO_1362 Putative transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D CNEO_2438 Putative transcriptional regulator, IscR-type K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D CNEO_3441 Putative HTH-type transcriptional repressor K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D CNEO_3030 Putative transcriptional repressor, ArsR-type K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CNEO_1253 Putative transcriptional regulator AbgR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CNEO_0810 Putative transcriptional regulator, ArsR-like K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CNEO_0364 Putative transcriptional regulator, ArsR-type K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CNEO_2966 Putative autorepressor SdpR K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
C XRE family
C PadR family
D CNEO_1606 padR; Transcription regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
C Other families
D CNEO_2946 mntR; Transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D CNEO_1120 Putative transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CNEO_3519 birA; Bifunctional ligase/repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CNEO_0127 purR; Transcriptional regulator, Purine operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D CNEO_4669 Putative PTS system transcriptional regulator, LevR-type K19505 gfrR; sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
D CNEO_3192 Putative fused sensor/response regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CNEO_0433 rex; Redox-sensing transcriptional repressor K01926 rex; redox-sensing transcriptional repressor
D CNEO_3335 codY; Transcriptional regulator, GTP-sensing pleiotropic repressor K03706 codY; transcriptional pleiotropic repressor
D CNEO_3039 Putative transcriptional regulator, Cro/C1-type K07727 K07727; putative transcriptional regulator
D CNEO_0280 Putative transcriptional regulator K07729 K07729; putative transcriptional regulator
D CNEO_2015 Putative regulator K07729 K07729; putative transcriptional regulator
D CNEO_0779 Transcriptional regulator, HTH-type K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D CNEO_0907 PTS system transcription antiterminator, LicT-type K03488 licT; beta-glucoside operon transcriptional antiterminator
D CNEO_0933 Putative PTS system transcription antiterminator, LicT-type K03488 licT; beta-glucoside operon transcriptional antiterminator
D CNEO_1658 Putative PTS transcription antiterminator, LicT-type K03488 licT; beta-glucoside operon transcriptional antiterminator
D CNEO_4535 Putative PTS system transcriptional antiterminator, LicT-type K03480 glcT; transcriptional antiterminator
D CNEO_4631 Putative PTS system transcriptional regulator, MtlR-type K03491 licR; probable licABCH operon transcriptional regulator
D CNEO_0428 Putative PTS system transcriptional regulator, MtlR-type K03491 licR; probable licABCH operon transcriptional regulator
D CNEO_0827 Putative PTS system transcriptional regulator, MtlR-type K03491 licR; probable licABCH operon transcriptional regulator
D CNEO_1115 Putative PTS system trascriptional regulator, MltR-type K03491 licR; probable licABCH operon transcriptional regulator
C Others
D CNEO_4403 Putative metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CNEO_3116 Putative transcriptional regulator, AbrB-lilke domain K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D CNEO_4476 Putative transcriptional regulator, AbrB-like domain K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D CNEO_0138 spoVT; Stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D CNEO_4751 Putative DNA-binding protein Spo0J-like K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CNEO_3041 Putative transcriptional regulator, CarD-like/TRCF domain K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D CNEO_0861 Putative transcriptional regulator, CarD-like/TRCF domain K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D CNEO_2817 Putative transcriptional regulator, CarD-like/TRCF domain K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D CNEO_4383 Putative glycerol uptake operon antiterminator regulator GlpP K02443 glpP; glycerol uptake operon antiterminator
D CNEO_1686 gllP; Glycerol uptake operon antiterminator regulator K02443 glpP; glycerol uptake operon antiterminator
D CNEO_2122 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CNEO_3776 hrcA; Heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D CNEO_0177 ctsR; Transcriptional repressor K03708 ctsR; transcriptional regulator of stress and heat shock response
D CNEO_1023 cggR; Central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D CNEO_2082 pyrR; Uracil phosphoribosyltransferase / Pyrimidine operon regulatory bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CNEO_3412 nrdR; Transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D CNEO_2063 mraZ; Putative transcriptional regulator K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
#
Classification taken and modified from TRANSFAC 7.0