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  Transfer RNA Biogenesis - Colwellia sp. MT41

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AEukaryotic type B 5'processing factors C Ribonucrease P B 3'processing and CCA adding factors C 3'processing factors C CCA adding factors D CMT41_14505 cca; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonuclease complex C tRNA splicing ligase complex C Other tRNA splicing factors B tRNA transport factors C tRNA export factors C tRNA import factors B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D CMT41_06675 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CMT41_06615 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CMT41_04735 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CMT41_11195 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CMT41_08130 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CMT41_06575 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CMT41_04420 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CMT41_13935 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CMT41_10555 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] C Other AARSs D CMT41_04005 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CMT41_09075 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CMT41_07750 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CMT41_08505 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CMT41_13185 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CMT41_02915 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CMT41_14635 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CMT41_07585 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CMT41_07590 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CMT41_16780 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CMT41_02050 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C Trans-editing factors D CMT41_02360 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] C AARS associated factors D CMT41_09880 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] B tRNA modification factors C Deaminases C Dihydorouridine synthases C Methylthiotransferase C Methyltransferases D CMT41_14185 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CMT41_08115 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D CMT41_13240 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CMT41_10150 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CMT41_04145 pseudouridine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] C Thiolation factors D CMT41_04515 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CMT41_03135 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C KEOPS/EKC complex C Elongator complex C Elongator related proteins C Other tRNA modification factors D CMT41_00135 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CMT41_01480 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CMT41_18360 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CMT41_18345 gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CMT41_03010 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] B tRNA degradation factors C TRAMP complex C Rapid tRNA decay (RTD) pathway factors D CMT41_01805 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] C Other tRNA degradation factors # AProkaryotic type B 5'processing factors C Ribonucrease P D CMT41_18375 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CMT41_18385 bacterial RNase P K01978 rnpB; M1 RNA B 3'processing and CCA adding factors C 3'processing factors D CMT41_11835 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D CMT41_00445 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D CMT41_11945 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] C CCA adding factors D CMT41_14505 cca; 2', 3'-cyclic nucleotide 2'-phosphodiesterase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] B tRNA spricing factors C tRNA splicing endonucleases C tRNA splicing ligases C Other tRNA splicing factors B tRNA transport factors C tRNA export factors D CMT41_13510 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA B Aminoacyl-tRNA synthetases (AARSs) C Multi-aminoacyl-tRNA synthetase complex (MSC) D CMT41_11195 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CMT41_06615 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] C Other AARSs D CMT41_16780 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CMT41_02050 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CMT41_07750 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CMT41_04735 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CMT41_13935 lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CMT41_04005 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CMT41_02915 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CMT41_08130 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CMT41_08505 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CMT41_10555 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CMT41_00025 glycyl-tRNA synthetase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CMT41_00030 glyS; glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CMT41_13185 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CMT41_06675 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CMT41_06575 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CMT41_04420 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CMT41_07585 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CMT41_07590 pheT; phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CMT41_14635 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CMT41_09075 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CMT41_14820 glutamyl-Q tRNA(Asp) ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] C Trans-editing factors D CMT41_02360 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D CMT41_07260 aminoacyl-tRNA deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D CMT41_12960 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] B tRNA modification factors C Deaminases D CMT41_12695 hypothetical protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] C Dihydorouridine synthases D CMT41_01620 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D CMT41_02120 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CMT41_03310 tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] C Methylthiotransferases D CMT41_12215 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] C Methyltransferases D CMT41_10565 tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D CMT41_10570 tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D CMT41_01555 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D CMT41_14185 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CMT41_13845 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CMT41_18360 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CMT41_17980 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D CMT41_03685 RNA methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D CMT41_04500 tRNA (cytidine/uridine-2'-O-)-methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D CMT41_08845 SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D CMT41_15170 rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CMT41_08115 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] C Psudouridine synthases D CMT41_13240 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CMT41_10150 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CMT41_12600 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D CMT41_04145 pseudouridine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D CMT41_12745 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CMT41_13915 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CMT41_15790 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CMT41_04560 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] C Thiolation factors D CMT41_07805 mnmA; tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CMT41_07625 tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CMT41_00055 sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CMT41_06795 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CMT41_09500 sulfur oxidation protein DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D CMT41_09495 sulfur oxidation protein DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C D CMT41_09490 sulfur reduction protein DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D CMT41_09505 sulfur relay protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D CMT41_04525 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D CMT41_04515 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CMT41_03135 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CMT41_14115 tRNA-modifying protein K06980 ygfZ; tRNA-modifying protein YgfZ C KEOPS/EKC complex C Other tRNA modification factors D CMT41_18345 gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CMT41_01480 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CMT41_13200 tRNA hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D CMT41_11435 tRNA hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] D CMT41_13265 FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D CMT41_04455 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CMT41_07880 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CMT41_07525 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CMT41_07545 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CMT41_07885 pyrroloquinoline quinone biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CMT41_07455 pyrroloquinoline quinone biosynthesis protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CMT41_12025 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CMT41_01455 epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CMT41_03010 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D CMT41_03015 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D CMT41_04460 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CMT41_04245 tRNA s(4)U8 sulfurtransferase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CMT41_06035 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CMT41_04095 hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D CMT41_04750 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CMT41_00135 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CMT41_14935 tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CMT41_01465 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CMT41_10115 sulfur acceptor protein CsdL K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase B tRNA degradation factors C CMT41_16235 exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] C CMT41_10140 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024