+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Actibacterium sp. EMB200-NS6

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D TQ29_01720 ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C TQ29_01725 GTPase Era K03595 era; GTPase C TQ29_09500 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C TQ29_07485 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C TQ29_00385 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C TQ29_13375 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C TQ29_01865 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D TQ29_07520 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TQ29_09280 SAM-dependent methlyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D TQ29_16765 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D TQ29_14845 MFS transporter K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D TQ29_01475 DNA methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D TQ29_15385 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TQ29_00200 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TQ29_05950 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TQ29_02610 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D TQ29_05835 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TQ29_07845 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TQ29_01200 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D TQ29_07450 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D TQ29_01125 RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TQ29_00315 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D TQ29_16850 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D TQ29_04645 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TQ29_02095 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TQ29_13340 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TQ29_14825 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] B ribosomal protein modification factors C TQ29_02555 alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C TQ29_05495 GCN5 family acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C TQ29_11020 30S ribosomal protein S6 modification protein RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C TQ29_14060 rimM; 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM C TQ29_02310 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C TQ29_05235 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C TQ29_01720 ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3] C TQ29_08905 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C TQ29_14360 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C TQ29_07360 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C TQ29_15005 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C TQ29_01725 GTPase Era K03595 era; GTPase C TQ29_07435 GTP-binding protein Der K03977 engA; GTPase C TQ29_09500 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C TQ29_08975 GTPase HflX K03665 hflX; GTPase B Other maturation factors C TQ29_15315 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C TQ29_01695 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C TQ29_16780 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C TQ29_00380 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP C TQ29_01205 ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C TQ29_03710 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor C TQ29_00505 ribose ABC transporter permease K05808 hpf; ribosome hibernation promoting factor C TQ29_14215 GTP-binding protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024