+E Ribosome biogenesis KO
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Ribosome Biogenesis - Coprobacter secundus subsp. similis
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Cop2CBH44_24140 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Cop2CBH44_19390 era; GTPase Era K03595 era; GTPase
C Cop2CBH44_26390 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Cop2CBH44_09000 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C Cop2CBH44_19100 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C Cop2CBH44_08070 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C Cop2CBH44_15990 transcriptional regulator K02601 nusG; transcription termination/antitermination protein NusG
C Cop2CBH44_25880 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Cop2CBH44_27470 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Cop2CBH44_29280 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Cop2CBH44_00770 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Cop2CBH44_07380 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Cop2CBH44_24860 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Cop2CBH44_31810 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Cop2CBH44_09330 S-adenosylmethionine-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Cop2CBH44_14100 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Cop2CBH44_03970 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Cop2CBH44_10770 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Cop2CBH44_22580 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Cop2CBH44_13110 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Cop2CBH44_10040 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Cop2CBH44_12310 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Cop2CBH44_19230 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Cop2CBH44_31240 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Cop2CBH44_07310 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Cop2CBH44_18990 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Cop2CBH44_11580 ermC; 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
B ribosomal protein modification factors
C Cop2CBH44_26970 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C Cop2CBH44_12800 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C Cop2CBH44_15670 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Cop2CBH44_06730 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Cop2CBH44_24140 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Cop2CBH44_17840 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C Cop2CBH44_19950 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Cop2CBH44_21960 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Cop2CBH44_19390 era; GTPase Era K03595 era; GTPase
C Cop2CBH44_30150 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Cop2CBH44_19380 der; GTPase Der K03977 engA; GTPase
C Cop2CBH44_26390 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C Cop2CBH44_26090 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C Cop2CBH44_05960 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Cop2CBH44_10010 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Cop2CBH44_18200 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Cop2CBH44_21730 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Cop2CBH44_19110 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C Cop2CBH44_19870 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C Cop2CBH44_25860 RNA polymerase subunit sigma-54 K05808 hpf; ribosome hibernation promoting factor
C Cop2CBH44_22360 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
C Cop2CBH44_19420 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024