+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Coprobacter secundus subsp. similis

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D Cop2CBH44_24140 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C Cop2CBH44_19390 era; GTPase Era K03595 era; GTPase C Cop2CBH44_26390 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C Cop2CBH44_09000 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C Cop2CBH44_19100 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C Cop2CBH44_08070 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C Cop2CBH44_15990 transcriptional regulator K02601 nusG; transcription termination/antitermination protein NusG C Cop2CBH44_25880 nusG; transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D Cop2CBH44_27470 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Cop2CBH44_29280 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Cop2CBH44_00770 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Cop2CBH44_07380 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Cop2CBH44_24860 rsmH; ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Cop2CBH44_31810 rsmI; ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Cop2CBH44_09330 S-adenosylmethionine-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] C 23S rRNA modification factors D Cop2CBH44_14100 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Cop2CBH44_03970 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Cop2CBH44_10770 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Cop2CBH44_22580 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Cop2CBH44_13110 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Cop2CBH44_10040 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Cop2CBH44_12310 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Cop2CBH44_19230 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Cop2CBH44_31240 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Cop2CBH44_07310 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Cop2CBH44_18990 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Cop2CBH44_11580 ermC; 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C) K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184] B ribosomal protein modification factors C Cop2CBH44_26970 hypothetical protein K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C Cop2CBH44_12800 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C Cop2CBH44_15670 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C Cop2CBH44_06730 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C Cop2CBH44_24140 rnc; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Cop2CBH44_17840 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C Cop2CBH44_19950 putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C Cop2CBH44_21960 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C Cop2CBH44_19390 era; GTPase Era K03595 era; GTPase C Cop2CBH44_30150 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C Cop2CBH44_19380 der; GTPase Der K03977 engA; GTPase C Cop2CBH44_26390 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C Cop2CBH44_26090 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C Cop2CBH44_05960 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C Cop2CBH44_10010 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Cop2CBH44_18200 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Cop2CBH44_21730 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C Cop2CBH44_19110 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C Cop2CBH44_19870 rsfS; ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C Cop2CBH44_25860 RNA polymerase subunit sigma-54 K05808 hpf; ribosome hibernation promoting factor C Cop2CBH44_22360 ychF; ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C Cop2CBH44_19420 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024