+E Ribosome biogenesis KO
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Ribosome Biogenesis - Campylobacter peloridis
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D CPEL_1593 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C CPEL_0830 era; GTP-binding protein K03595 era; GTPase
C CPEL_0186 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C CPEL_0214 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C CPEL_0330 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
C CPEL_0495 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
C CPEL_0453 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D CPEL_0018 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CPEL_1524 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CPEL_1235 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CPEL_1289 mraW; S-adenosyl-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CPEL_1522 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CPEL_0742 tlyA; ribosomal RNA large subunit methyltransferase, FtsJ family, putative hemolysin A protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D CPEL_1521 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CPEL_0215 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CPEL_0020 rlmN; 23S rRNA m2A2503 methyltransferase, radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CPEL_0742 tlyA; ribosomal RNA large subunit methyltransferase, FtsJ family, putative hemolysin A protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CPEL_0016 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CPEL_0676 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CPEL_1101 rluA; 23S RNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CPEL_0022 23S rRNA pseudouridine synthase, RluD family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C CPEL_1097 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C CPEL_0272 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C CPEL_1366 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C CPEL_1593 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C CPEL_1047 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C CPEL_0830 era; GTP-binding protein K03595 era; GTPase
C CPEL_0490 engA; GTP-binding protein K03977 engA; GTPase
C CPEL_0186 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C CPEL_0684 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C CPEL_0225 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C CPEL_0226 hypothetical protein (DUF150 domain) K09748 rimP; ribosome maturation factor RimP
C CPEL_0429 iojap-like ribosome-associated protein (DUF143 domain) K09710 ybeB; ribosome-associated protein
C CPEL_0798 metal-dependent hydrolase (UPF0054 domain) K07042 ybeY; probable rRNA maturation factor
C CPEL_1141 sigma-54 modulation protein/ribosomal protein, S30EA family K05808 hpf; ribosome hibernation promoting factor
C CPEL_0745 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024