+F Repair protein KO
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DNA Repair and Recombination Proteins - Cucurbita pepo subsp. pepo (vegetable marrow)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111803719 DNA oxidative demethylase ALKBH2-like K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 111783002 DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 111809422 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111789179 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111790859 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111806540 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111792320 methyl-CpG-binding domain protein 4-like protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 111808729 N-glycosylase/DNA lyase OGG1 isoform X1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 111801494 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111790651 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111780976 DNA-(apurinic or apyrimidinic site) lyase 2 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 111781827 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 111791040 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 111785379 uncharacterized protein LOC111785379 K03504 POLD3; DNA polymerase delta subunit 3
F 111794744 uncharacterized protein LOC111794744 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 111795204 DNA polymerase epsilon catalytic subunit A-like K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 111789296 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 111795460 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 111776764 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111794476 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111807575 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111794004 flap endonuclease 1 isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 111777258 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 111806415 DNA-repair protein XRCC1 isoform X1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 111804046 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 111801005 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111796745 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 111788101 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 111811542 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 111778172 LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 111807468 poly [ADP-ribose] polymerase 2-like K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E 111794860 poly [ADP-ribose] polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 111777225 DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 111799989 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 111802298 ubiquitin receptor RAD23d-like K10839 RAD23; UV excision repair protein RAD23
F 111789263 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
F 111790610 ubiquitin receptor RAD23b-like isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 111791668 ubiquitin receptor RAD23b-like K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 111779645 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111798730 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111793107 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111783061 cullin-4-like K10609 CUL4; cullin 4
F 111801834 cullin-4-like K10609 CUL4; cullin 4
F 111783375 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 111801684 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111776752 protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 111780530 uncharacterized protein LOC111780530 K15082 RAD7; DNA repair protein RAD7
F 111777227 DNA repair protein RAD16 isoform X1 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 111801011 DNA-directed RNA polymerase II subunit 1-like isoform X1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 111809692 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 111803581 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 111792725 DNA-directed RNA polymerases II, IV and V subunit 3-like K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 111780990 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111804520 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111804521 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111797921 DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111808205 DNA-directed RNA polymerase II subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 111778130 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111806439 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111799891 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111801319 DNA-directed RNA polymerases II and IV subunit 5A-like K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 111809616 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111801352 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 111789141 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111809014 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111792654 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 111799670 DNA-directed RNA polymerases II and V subunit 8A-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111809783 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 111799967 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 111798129 DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111805024 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 111789050 DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111778657 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111790924 DNA-directed RNA polymerases II, IV and V subunit 11-like K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 111783554 DNA-directed RNA polymerases II, IV and V subunit 12-like K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F 111802139 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 111779645 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111798730 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111793107 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 111783061 cullin-4-like K10609 CUL4; cullin 4
F 111801834 cullin-4-like K10609 CUL4; cullin 4
F 111783375 DNA damage-binding protein 1a K10610 DDB1; DNA damage-binding protein 1
F 111801684 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 111798518 DNA excision repair protein ERCC-8-like isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 111795612 protein CHROMATIN REMODELING 8-like K10841 ERCC6; DNA excision repair protein ERCC-6
F 111811501 protein CHROMATIN REMODELING 8-like isoform X1 K10841 ERCC6; DNA excision repair protein ERCC-6
F 111806883 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 111776480 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
F 111809782 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 111808833 DNA repair helicase XPB1-like K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 111807344 DNA repair helicase XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 111800307 probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 111789279 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 111808680 RNA polymerase II transcription factor B subunit 4 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 111803566 RNA polymerase II transcription factor B subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 111799950 RNA polymerase II transcription factor B subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 111779571 cyclin-dependent kinase D-3-like K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111793919 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 111782267 cyclin-H1-1 K06634 CCNH; cyclin H
E 111793481 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 111800795 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111805440 replication protein A 70 kDa DNA-binding subunit A-like isoform X1 K07466 RFA1; replication factor A1
E 111810596 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111805441 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111793267 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111780676 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 111788263 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111796694 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111793027 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111800658 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111791146 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Other NER factors
E 111780129 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 111795564 DNA repair endonuclease UVH1-like K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111795567 DNA repair endonuclease UVH1-like K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 111792393 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 111777258 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111806360 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 111786108 cullin-3A-like K03869 CUL3; cullin 3
E 111793073 cullin-3A-like K03869 CUL3; cullin 3
E 111791377 cullin-3A-like isoform X1 K03869 CUL3; cullin 3
E 111787459 elongin-C-like K03872 ELOC; elongin-C
E 111782738 elongin-C-like K03872 ELOC; elongin-C
E 111787614 elongin-C-like K03872 ELOC; elongin-C
E 111784646 elongin-C-like K03872 ELOC; elongin-C
E 111798058 uncharacterized protein LOC111798058 K03873 ELOB; elongin-B
E 111796229 transcription elongation factor B polypeptide 3 isoform X1 K15077 ELA1; elongin-A
E 111790279 uncharacterized protein LOC111790279 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111780449 DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 111810348 LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 111779129 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 111806177 DNA mismatch repair protein MSH7-like K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 111788365 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 111807151 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 111800155 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 111781827 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 111791040 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 111785379 uncharacterized protein LOC111785379 K03504 POLD3; DNA polymerase delta subunit 3
E 111794744 uncharacterized protein LOC111794744 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 111800795 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111805440 replication protein A 70 kDa DNA-binding subunit A-like isoform X1 K07466 RFA1; replication factor A1
E 111810596 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111805441 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111793267 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111780676 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 111788263 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111796694 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111793027 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111800658 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111791146 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 111794543 replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 111787896 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
E 111809684 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 111781207 uncharacterized protein LOC111781207 K10756 RFC3_5; replication factor C subunit 3/5
E 111803358 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 111800075 uncharacterized protein LOC111800075 K10756 RFC3_5; replication factor C subunit 3/5
E 111800076 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 111808941 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
E 111808767 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 111776764 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 111794476 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111807575 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 111783007 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111801668 exonuclease 1 isoform X1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 111777258 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 111780606 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 111796602 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111790570 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 111785298 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA1-core complex
E 111781192 protein BREAST CANCER SUSCEPTIBILITY 1 homolog K10683 BARD1; BRCA1-associated RING domain protein 1
E 111803452 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 111811558 BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 111788267 uncharacterized protein LOC111788267 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 111788982 BRISC and BRCA1-A complex member 2-like isoform X1 K12173 BRE; BRCA1-A complex subunit BRE
E 111796807 BRISC and BRCA1-A complex member 2-like K12173 BRE; BRCA1-A complex subunit BRE
E 111789075 lys-63-specific deubiquitinase BRCC36-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E 111791427 lys-63-specific deubiquitinase BRCC36-like isoform X1 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 111797508 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 111797231 DNA topoisomerase 2-binding protein 1 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 111807329 BRCT domain-containing protein At4g02110 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 111796602 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111790570 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 111785298 nijmegen breakage syndrome 1 protein K10867 NBN; nibrin
D BRCA complex
E 111789840 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 111779674 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 111779674 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111776831 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 111800642 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111794464 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 111808334 DNA repair protein XRCC2 homolog isoform X1 K10879 XRCC2; DNA-repair protein XRCC2
E 111799135 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 111797512 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
E 111786250 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 111787442 protein CHROMATIN REMODELING 25-like isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111777614 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111811147 SNF2 domain-containing protein CLASSY 3-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111802863 SNF2 domain-containing protein CLASSY 1-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111794578 SNF2 domain-containing protein CLASSY 4-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 111794644 protein CHROMATIN REMODELING 35-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 111776246 mediator of RNA polymerase II transcription subunit 34 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111804723 ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 111798790 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 111810574 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111798724 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111802739 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 111810574 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111798724 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111789782 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111791429 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111779720 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111782580 uncharacterized protein LOC111782580 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 111800795 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 111805440 replication protein A 70 kDa DNA-binding subunit A-like isoform X1 K07466 RFA1; replication factor A1
E 111810596 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111805441 replication protein A 70 kDa DNA-binding subunit A-like K07466 RFA1; replication factor A1
E 111793267 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 111780676 replication protein A 32 kDa subunit B-like isoform X1 K10739 RFA2; replication factor A2
E 111788263 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111796694 replication protein A 32 kDa subunit A-like K10739 RFA2; replication factor A2
E 111793027 replication protein A 32 kDa subunit B-like K10739 RFA2; replication factor A2
E 111800658 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
E 111791146 replication protein A 14 kDa subunit B-like K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 111796818 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 111788592 putative BPI/LBP family protein At1g04970 isoform X1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 111777106 serine/threonine-protein phosphatase 4 regulatory subunit 2-like isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 111810890 serine/threonine-protein phosphatase 4 regulatory subunit 2-like isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 111778464 serine/threonine-protein phosphatase 4 regulatory subunit 3A-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111806829 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111791824 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E 111799966 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X1 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 111785232 AP-5 complex subunit beta-1-like isoform X1 K19022 AP5B1; AP-5 complex subunit beta-1
E 111799104 uncharacterized protein LOC111799104 K19022 AP5B1; AP-5 complex subunit beta-1
E 111779204 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 111789170 AP-5 complex subunit zeta-1-like isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
E 111797498 AP-5 complex subunit zeta-1-like K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 111806702 structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 111808206 structural maintenance of chromosomes protein 6B-like isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 111795154 non-structural maintenance of chromosomes element 1 homolog K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 111789160 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 111779675 non-structural maintenance of chromosomes element 4 homolog A-like K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 111793286 non-structural maintenance of chromosomes element 4 homolog A-like isoform X1 K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 111804024 crossover junction endonuclease EME1B isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 111778613 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 111782564 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111798596 protein DSS1 HOMOLOG ON CHROMOSOME V-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 111782823 uncharacterized protein LOC111782823 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111791212 structure-specific endonuclease subunit slx1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 111778221 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111801603 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 111782046 uncharacterized protein LOC111782046 isoform X1 K19026 SPG11; spatacsin
E 111796702 uncharacterized protein LOC111796702 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 111804230 protein MRG1-like K11339 MORF4L1; mortality factor 4-like protein 1
E 111781248 protein MRG1-like K11339 MORF4L1; mortality factor 4-like protein 1
E 111797191 protein MRG1-like isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 111793875 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 111803606 ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 111789825 uncharacterized protein LOC111789825 isoform X1 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 111800556 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 111803415 DNA-dependent metalloprotease WSS1-like isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111797532 uncharacterized protein LOC111797532 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111789010 uncharacterized protein LOC111789010 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 111798264 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 111805284 single-stranded DNA-binding protein WHY1, chloroplastic-like K26559 WHY1; single-stranded DNA-binding protein WHY1
E 111787963 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 111801020 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 111801125 ATP-dependent DNA helicase 2 subunit KU80 isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 111796602 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 111790570 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 111785068 DNA ligase 4-like K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 111805700 DNA ligase 4 isoform X1 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 111811385 DNA repair protein XRCC4 isoform X1 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 111788101 DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 111801005 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 111802155 uncharacterized protein LOC111802155 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 111809228 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 111802599 protein MHF1 homolog K11511 APITD1; centromere protein S
E 111780488 protein MHF2 homolog K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 111810574 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111798724 ATP-dependent DNA helicase Q-like 3 isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 111789782 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111791429 DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 111779720 recQ-mediated genome instability protein 1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 111782580 uncharacterized protein LOC111782580 isoform X1 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 111789840 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 111797508 Fanconi anemia group J protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 111788577 fanconi-associated nuclease 1 homolog K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 111779674 DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 111800642 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 111783259 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 111798694 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
E 111805337 WD repeat-containing protein 48-like isoform X1 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 111805077 phytochrome-associated serine/threonine-protein phosphatase-like isoform X1 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111801866 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 111777205 serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111781395 serine/threonine-protein phosphatase 6 regulatory subunit 1-like isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111795956 serine/threonine-protein phosphatase 6 regulatory subunit 3-like K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 111803807 serine/threonine-protein phosphatase 6 regulatory subunit 2 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 111783208 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 111795462 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 111780606 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 111781986 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 111811256 DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 111811252 DNA repair protein REV1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 111804784 LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 111802336 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111801517 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111795989 ubiquitin-conjugating enzyme E2 2-like K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111795998 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 111782461 DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 111787331 ubiquitin-conjugating enzyme E2 variant 1A-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111786325 ubiquitin-conjugating enzyme E2 variant 1A-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111780638 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111779730 ubiquitin-conjugating enzyme E2 variant 1B-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111801121 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111791240 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111801181 ubiquitin-conjugating enzyme E2 variant 1A isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 111785995 ubiquitin-conjugating enzyme E2 36-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 111810686 ubiquitin-conjugating enzyme E2 35 isoform X1 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 111811940 ubiquitin-conjugating enzyme E2 36-like K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 111776764 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 111794476 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 111807575 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 111798487 cell cycle checkpoint control protein RAD9A isoform X1 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 111807621 uncharacterized protein LOC111807621 K10903 HUS1; HUS1 checkpoint protein
D 111796019 uncharacterized protein LOC111796019 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 111803831 cell cycle checkpoint protein RAD17 K06662 HRAD17; cell cycle checkpoint protein
D 111787896 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4
D 111809684 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 111781207 uncharacterized protein LOC111781207 K10756 RFC3_5; replication factor C subunit 3/5
D 111803358 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 111800075 uncharacterized protein LOC111800075 K10756 RFC3_5; replication factor C subunit 3/5
D 111800076 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 111808941 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
D 111808767 replication factor C subunit 3-like K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 111796019 uncharacterized protein LOC111796019 isoform X1 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 111795370 protein timeless homolog K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 111805055 TIMELESS-interacting protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 111783259 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 111811478 uncharacterized protein LOC111811478 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 111807687 uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 111798029 large proline-rich protein bag6-B-like K23390 BAG6; large proline-rich protein BAG6
D 111804857 large proline-rich protein bag6-B isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 111778618 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
D 111786856 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 111792389 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 111793694 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 111788266 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111788268 14-3-3 protein 7-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111788500 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 111797213 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111805299 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 111805677 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 111793149 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 111799179 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 111799182 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111805951 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111804959 14-3-3 protein 7-like isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111811586 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 111789391 14-3-3-like protein A K06630 YWHAE; 14-3-3 protein epsilon
D 111791022 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 111778942 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 111778579 uncharacterized protein LOC111778579 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111807065 uncharacterized protein LOC111807065 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 111777005 serine/threonine-protein kinase Nek5-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111781588 serine/threonine-protein kinase Nek6-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111807643 serine/threonine-protein kinase Nek4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111803405 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111794928 serine/threonine-protein kinase Nek5-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111805048 serine/threonine-protein kinase Nek2-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111799088 serine/threonine-protein kinase Nek3-like isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 111800739 protein downstream neighbor of Son-like isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 111790844 protein downstream neighbor of Son-like isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 111777748 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111794858 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 111807396 replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 111778360 replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 111789020 protein DECREASED SIZE EXCLUSION LIMIT 1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 111805123 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 111811433 DNA polymerase V K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 111810012 DNA-directed primase/polymerase protein K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 111787710 DNA ligase 6-like isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111794563 uncharacterized protein LOC111794563 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111797749 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D 111811706 5' exonuclease Apollo-like K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 111776825 LOW QUALITY PROTEIN: exonuclease V, chloroplastic K17815 EXO5; exonuclease V [EC:3.1.-.-]
D 111804971 endonuclease V K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 111780438 DNA annealing helicase and endonuclease ZRANB3 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 111783288 endonuclease 1-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111801738 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 111803372 endonuclease 4-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 111795043 switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 111800120 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111790519 pre-mRNA-processing factor 19-like K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 111795264 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 111792713 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 111782465 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 111806497 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 111808402 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111801849 geranyl diphosphate phosphohydrolase-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111805519 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 111782127 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111803152 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111803311 ribonucleoside-diphosphate reductase large subunit-like K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 111790709 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 111808745 ribonucleoside-diphosphate reductase small chain-like K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 111809422 deoxyribodipyrimidine photo-lyase isoform X1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 111789179 uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 111788764 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111797615 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111803041 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 111790859 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 111806540 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 111787800 uncharacterized protein LOC111787800 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111776761 uncharacterized protein LOC111776761 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111778684 uncharacterized protein LOC111778684 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111796735 uncharacterized protein LOC111796735 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111791309 uncharacterized protein LOC111791309 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 111787542 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 111801494 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 111790651 endonuclease III homolog 1, chloroplastic-like isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 111784025 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 111798124 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 111798124 DNA polymerase I B, chloroplastic/mitochondrial-like K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 111802442 uncharacterized protein LOC111802442 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 111783073 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
E 111801965 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 111788374 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 111785058 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111780263 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111805982 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 111788374 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 111785058 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111780263 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111805982 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
E 111790828 uncharacterized protein LOC111790828 K04485 radA; DNA repair protein RadA/Sms
E 111798893 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 111805536 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 111804077 DNA gyrase subunit B, chloroplastic/mitochondrial-like K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 111782167 uncharacterized protein LOC111782167 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 111788374 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 111785058 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 111780263 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 111805982 DNA repair protein recA homolog 3, mitochondrial-like K03553 recA; recombination protein RecA
D 111783073 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
D 111801965 single-stranded DNA-binding protein, mitochondrial-like K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 111808402 nudix hydrolase 1-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111801849 geranyl diphosphate phosphohydrolase-like K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 111805519 LOW QUALITY PROTEIN: deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024