+D GENES KO #

  KEGG Orthology (KO) - Clostridium perfringens ATCC 13124

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:cpf00010] D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CPF_2549 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_1389 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1718 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1557 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0081 putative fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_1509 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CPF_1511 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CPF_1510 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CPF_1508 gpmI; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CPF_1281 pyruvate kinase barrel domain protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2404 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_0351 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2268 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CPF_2318 nifJ; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CPF_0098 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_1551 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_2748 gapN; glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CPF_2609 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CPF_0070 putative PTS system, N-acetylglucosamine-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CPF_2412 ptsG; PTS system, glucose-specific IIBC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) D CPF_2318 nifJ; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:cpf00030] D CPF_2549 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CPF_1232 conserved hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D CPF_1989 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CPF_0292 putative transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CPF_0293 putative transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CPF_0684 putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CPF_2463 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CPF_2309 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D CPF_1884 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D CPF_0376 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_1800 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CPF_2812 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CPF_0397 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CPF_2748 gapN; glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CPF_0398 kinase, pfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D CPF_1557 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0081 putative fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_1389 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1718 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:cpf00040] D CPF_0395 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D CPF_0399 kduI; 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D CPF_0396 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D CPF_0483 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0487 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0649 putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CPF_0648 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CPF_1989 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CPF_1049 fucK; L-fuculokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D CPF_0732 L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CPF_1048 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D CPF_1051 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:cpf00051] D CPF_1782 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CPF_0734 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CPF_1391 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CPF_2607 nucleotidyl transferase family protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CPF_1048 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D CPF_1051 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D CPF_1049 fucK; L-fuculokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_1389 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1718 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_0565 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D CPF_0732 L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CPF_1557 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0081 putative fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_1509 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CPF_0095 dihydroxyacetone kinase family protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CPF_2463 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CPF_0564 fruA; PTS system, fructose-specific, IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CPF_1717 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2965 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2968 PTS system, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0818 PTS system, mannose/fructose/sorbose family, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0819 PTS system, mannose/fructose/sorbose family, IIC component K02795 manY; mannose PTS system EIIC component D CPF_1715 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_2967 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_0820 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component D CPF_1714 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_2966 PTS system, IID component K02796 manZ; mannose PTS system EIID component C 00052 Galactose metabolism [PATH:cpf00052] D CPF_1551 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CPF_1552 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CPF_1553 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CPF_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_0486 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_0483 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0487 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CPF_1474 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0766 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_1221 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0826 glycosyl hydrolase, family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0160 beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D CPF_0491 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_1389 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1718 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_2962 putative tagatose-1,6-bisphosphate aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D CPF_1783 sucrose-6-phosphate dehydrogenase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CPF_2333 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_0421 putative oligo-1,6-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_2648 glycosyl hydrolase, family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_0404 PTS system, mannose/fructose/sorbose family, IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CPF_0401 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CPF_0402 PTS system, mannose/fructose/sorbose family, IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CPF_0403 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D CPF_2961 putative sugar isomerase, AgaS family K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:cpf00053] D CPF_0501 PTS system, L-Ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0644 putative PTS system, ascorbate-specific IIA component SgaA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0646 putative PTS system, ascorbate-specific IIB component SgaB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0502 PTS system, lactose/cellobiose-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0645 putative PTS system, ascorbate-specific IIC component SgaT K03475 ulaA; ascorbate PTS system EIIC component D CPF_0503 PTS system, L-Ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CPF_0643 conserved hypothetical protein K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-] D CPF_0649 putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CPF_0648 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:cpf00500] D CPF_1785 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CPF_1783 sucrose-6-phosphate dehydrogenase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CPF_2333 alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_0421 putative oligo-1,6-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_2648 glycosyl hydrolase, family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CPF_0483 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0487 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_2902 PTS system, lactose/cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CPF_2493 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CPF_2609 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CPF_1840 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CPF_2646 glgP; glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D CPF_1839 putative pullulanase K01200 pulA; pullulanase [EC:3.2.1.41] D CPF_1803 pulA; pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41] D CPF_1087 pullulanase family protein K01200 pulA; pullulanase [EC:3.2.1.41] D CPF_0802 glycosyl hydrolase, family 13 K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135] D CPF_2647 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D CPF_0070 putative PTS system, N-acetylglucosamine-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CPF_0422 PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CPF_0423 endonuclease/exonuclease/phosphatase family protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D CPF_1117 glycosyl hydrolase, family 65 K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64] D CPF_0541 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CPF_0542 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CPF_2549 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CPF_1782 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CPF_0734 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cpf00520] D CPF_0259 putative beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CPF_1614 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_1103 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_0070 putative PTS system, N-acetylglucosamine-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CPF_0071 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_1070 PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_2434 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D CPF_2744 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D CPF_1782 fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CPF_0734 scrK; fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CPF_2636 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CPF_2638 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CPF_2813 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CPF_2933 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_2449 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_0342 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CPF_0177 nanE; N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D CPF_0178 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D CPF_2461 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CPF_2412 ptsG; PTS system, glucose-specific IIBC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_0483 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0487 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_1552 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CPF_1553 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CPF_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_0486 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_1717 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2965 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2968 PTS system, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0818 PTS system, mannose/fructose/sorbose family, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0819 PTS system, mannose/fructose/sorbose family, IIC component K02795 manY; mannose PTS system EIIC component D CPF_1715 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_2967 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_0820 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component D CPF_1714 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_2966 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_2549 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CPF_1391 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CPF_2607 nucleotidyl transferase family protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:cpf00620] D CPF_2318 nifJ; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CPF_1356 pfl; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CPF_0895 ethanolamine utilization protein K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D CPF_1977 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_0208 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_1978 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CPF_1281 pyruvate kinase barrel domain protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2404 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_0351 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_1332 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CPF_1328 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CPF_1330 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CPF_1331 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CPF_2228 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_0091 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D CPF_0310 putative glycolate oxidase, subunit GlcD K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436] D CPF_0309 electron transfer flavoprotein, alpha subunit/FixB family protein K26114 lctC; lactate dehydrogenase (NAD+,ferredoxin) subunit LctC D CPF_0308 electron transfer flavoprotein, beta subunit/FixA family protein K26115 lctB; lactate dehydrogenase (NAD+,ferredoxin) subunit LctB D CPF_0098 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CPF_0449 putative lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D CPF_2191 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CPF_1350 ppcA; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CPF_2268 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cpf00630] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_2184 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CPF_0854 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CPF_1046 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] D CPF_0397 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:cpf00640] D CPF_0091 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D CPF_1977 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_0208 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_1978 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CPF_1356 pfl; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CPF_2584 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0092 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_1332 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CPF_1328 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CPF_1330 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CPF_1331 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CPF_0098 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CPF_1265 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D CPF_0094 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CPF_1046 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] D CPF_1180 dhaT; 1,3-propanediol dehydrogenase K00086 dhaT; 1,3-propanediol dehydrogenase [EC:1.1.1.202] C 00650 Butanoate metabolism [PATH:cpf00650] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2581 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CPF_2585 crt; 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D CPF_0090 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D CPF_2584 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0092 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_2331 alcohol dehydrogenase, short-chain family K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CPF_2656 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D CPF_2657 ptb; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D CPF_0895 ethanolamine utilization protein K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_2315 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CPF_0518 NAD-dependent 4-hydroxybutyrate dehydrogenase K18120 4hbD; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] D CPF_1356 pfl; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CPF_2318 nifJ; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:cpf00562] D CPF_0042 plc; phospholipase C K16619 plc; phospholipase C / alpha-toxin [EC:3.1.4.3] D CPF_0085 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CPF_0088 oxidoreductase, Gfo/Idh/MocA family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CPF_0086 iolE; myo-inositol catabolism protein IolE K03335 iolE; inosose dehydratase [EC:4.2.1.44] D CPF_0084 iolD; myo-inositol catabolism protein IolD K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D CPF_0083 putative myo-inositol catabolism protein IolB K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D CPF_0082 myo-inositol catabolism protein IolC K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D CPF_1509 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:cpf00190] D CPF_2454 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CPF_2452 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CPF_2453 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CPF_2455 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CPF_2451 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CPF_2458 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CPF_2456 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CPF_2457 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CPF_1890 V-type ATPase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D CPF_1889 V-type ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D CPF_1892 V-type ATPase, C subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D CPF_1888 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D CPF_1893 V-type ATPase, E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D CPF_1891 V-type ATPase, G subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D CPF_1896 ATP synthase homolog K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D CPF_1895 V-type ATPase, I subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D CPF_1894 V-type ATPase, K subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D CPF_2312 putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D CPF_2232 HAD-superfamily hydrolase, subfamily IA K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation by Calvin cycle [PATH:cpf00710] D CPF_1510 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CPF_1511 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CPF_1557 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0081 putative fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0292 putative transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CPF_0293 putative transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CPF_2463 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CPF_1509 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CPF_1989 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CPF_0684 putative transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CPF_1350 ppcA; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CPF_2268 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00720 Other carbon fixation pathways [PATH:cpf00720] D CPF_2318 nifJ; pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CPF_2268 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CPF_1350 ppcA; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_1332 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CPF_1328 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CPF_1330 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CPF_1331 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CPF_2785 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D CPF_2077 folD; folD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CPF_2123 methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D CPF_2051 narB; nitrate reductase electron transfer subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D CPF_1978 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CPF_1977 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_0208 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00680 Methane metabolism [PATH:cpf00680] D CPF_2051 narB; nitrate reductase electron transfer subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D CPF_2184 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CPF_1350 ppcA; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CPF_0095 dihydroxyacetone kinase family protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CPF_1557 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0081 putative fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_1389 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1718 phosphofructokinase family protein K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D CPF_1977 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_0208 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_1978 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CPF_1508 gpmI; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CPF_0061 putative D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CPF_2881 comB; 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:cpf00910] D CPF_2556 major facilitator family transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CPF_0526 nitrite/sulfite reductase homolog K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] D CPF_2909 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D CPF_1249 oxidoreductase, 2-nitropropane dioxygenase family K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D CPF_1770 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_2776 pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CPF_1463 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CPF_0164 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CPF_0414 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:cpf00920] D CPF_1938 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D CPF_1693 sulfite reductase, iron-sulfur subunit K16950 asrA; anaerobic sulfite reductase subunit A D CPF_1789 anaerobic sulfite reductase, A subunit K16950 asrA; anaerobic sulfite reductase subunit A D CPF_1788 anaerobic sulfite reductase, B subunit K16951 asrB; anaerobic sulfite reductase subunit B D CPF_1692 asrB; anaerobic sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D CPF_1691 arsC; anaerobic sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D CPF_1787 anaerobic sulfite reductase, C subunit K00385 asrC; anaerobic sulfite reductase subunit C D CPF_1528 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CPF_1529 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CPF_0170 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:cpf00061] D CPF_1332 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CPF_1328 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CPF_1330 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CPF_1331 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CPF_1973 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CPF_1325 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CPF_1324 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CPF_1327 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CPF_1326 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_2182 3-oxoacyl-(acyl-carrier-protein) reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_1329 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CPF_2331 alcohol dehydrogenase, short-chain family K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:cpf00071] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2584 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0092 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:cpf00121] D CPF_0705 cbh; choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D CPF_1154 7-alpha-hydroxysteroid dehydrogenase K22605 baiA; 3alpha-hydroxycholanate dehydrogenase (NADP+) [EC:1.1.1.392] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:cpf00561] D CPF_0854 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_0095 dihydroxyacetone kinase family protein K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CPF_0094 gldA; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CPF_2876 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CPF_1974 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CPF_1526 plsD; sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CPF_1671 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CPF_2274 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CPF_2470 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_0710 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_2501 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D CPF_0491 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D CPF_1173 dhaB; glycerol dehydratase, large subunit K06120 dhaB; glycerol dehydratase large subunit [EC:4.2.1.30] D CPF_1174 dhaC; glycerol dehydratase, medium subunit K06121 dhbC; glycerol dehydratase medium subunit [EC:4.2.1.30] D CPF_1175 dhaE; glycerol dehydratase, small subunit K06122 dhbE; glycerol dehydratase small subunit [EC:4.2.1.30] D CPF_1180 dhaT; 1,3-propanediol dehydrogenase K00086 dhaT; 1,3-propanediol dehydrogenase [EC:1.1.1.202] C 00564 Glycerophospholipid metabolism [PATH:cpf00564] D CPF_2007 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D CPF_2875 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CPF_0411 oxidoreductase, FAD-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CPF_1526 plsD; sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CPF_1671 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CPF_2274 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CPF_0042 plc; phospholipase C K16619 plc; phospholipase C / alpha-toxin [EC:3.1.4.3] D CPF_1188 putative lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D CPF_2131 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CPF_0424 putative glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CPF_0890 eutA; ethanolamine utilization protein EutA K04019 eutA; ethanolamine utilization protein EutA D CPF_0891 ethanolamine ammonia-lyase, large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D CPF_0892 ethanolamine ammonia-lyase, small subunit K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D CPF_1949 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CPF_1536 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CPF_0033 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CPF_1928 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CPF_0354 cardiolipin synthetase family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D CPF_0748 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D CPF_1683 cardiolipin synthetase family protein K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism D CPF_0042 plc; phospholipase C K16619 plc; phospholipase C / alpha-toxin [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:cpf00600] D CPF_1474 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0766 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_1221 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0826 glycosyl hydrolase, family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0221 sulfatase family protein K01130 E3.1.6.1; arylsulfatase [EC:3.1.6.1] D CPF_0721 nanI; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_0532 nanJ; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_0985 nanH; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_0491 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D CPF_1614 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_1103 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D CPF_2498 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:cpf00230] D CPF_2065 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CPF_2150 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CPF_0376 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_1800 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CPF_2812 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CPF_0674 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CPF_0678 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D CPF_0676 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CPF_0671 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D CPF_0675 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D CPF_0672 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D CPF_0673 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D CPF_1922 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CPF_0677 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CPF_2194 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CPF_0386 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_2818 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_1652 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_2011 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CPF_2216 hpt2; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CPF_2787 hpt1; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CPF_2558 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CPF_2227 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CPF_2535 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CPF_0319 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D CPF_1498 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D CPF_2557 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CPF_2001 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D CPF_2671 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CPF_2670 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CPF_0922 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CPF_2830 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CPF_2266 deoxynucleotide triphosphohydrolase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D CPF_2193 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CPF_1916 Ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CPF_0635 relA/spoT family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D CPF_1559 putative adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D CPF_2958 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CPF_2829 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D CPF_1476 putative adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D CPF_2418 Ser/Thr protein phosphatase family protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CPF_2206 5'-nucleotidase family protein/Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_2207 Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_2693 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CPF_0164 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:cpf00240] D CPF_2897 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CPF_2898 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CPF_1387 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CPF_1385 pyrC; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D CPF_1382 pyrD; dihydroorotate oxidase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D CPF_1383 pyrK; dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D CPF_1381 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CPF_1384 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CPF_1952 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CPF_2227 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CPF_2400 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D CPF_2472 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CPF_1340 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D CPF_1554 phosphoribulokinase/uridine kinase family protein K00876 udk; uridine kinase [EC:2.7.1.48] D CPF_2023 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D CPF_2206 5'-nucleotidase family protein/Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_2207 Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_0375 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D CPF_2462 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D CPF_2103 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CPF_2418 Ser/Thr protein phosphatase family protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CPF_2062 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D CPF_2273 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D CPF_0750 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CPF_0922 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CPF_2830 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CPF_2671 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CPF_2670 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CPF_1322 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CPF_1722 deoxyuridine 5'-triphosphate nucleotidohydrolase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CPF_0669 dut; deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CPF_2468 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D CPF_2735 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:cpf00250] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CPF_0383 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CPF_2005 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CPF_2233 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CPF_1258 aspD; L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CPF_0325 L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CPF_0683 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CPF_0682 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CPF_2958 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CPF_1922 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CPF_1387 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CPF_2315 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CPF_2776 pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CPF_1463 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CPF_1770 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_2897 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CPF_2898 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CPF_0571 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2251 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2636 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CPF_0674 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:cpf00260] D CPF_1932 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CPF_2160 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CPF_2184 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CPF_0854 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CPF_1508 gpmI; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CPF_0061 putative D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CPF_1536 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CPF_2959 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_2960 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_1245 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_1246 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_1368 tdcB; threonine dehydratase, catabolic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] C 00270 Cysteine and methionine metabolism [PATH:cpf00270] D CPF_1528 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CPF_1529 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CPF_0170 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D CPF_0169 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CPF_1670 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CPF_2435 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CPF_0527 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CPF_0529 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CPF_1305 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CPF_0063 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CPF_0978 phosphorylase family protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CPF_2011 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CPF_1475 amidohydrolase domain protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D CPF_1017 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1018 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0139 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0171 luxS; autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CPF_1932 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CPF_2160 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CPF_1772 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CPF_1825 gshAB; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CPF_0098 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CPF_1258 aspD; L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CPF_0325 L-aspartate beta-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CPF_2959 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_2960 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_1245 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_1246 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CPF_0061 putative D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:cpf00280] D CPF_1772 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CPF_2584 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0092 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0381 garR; 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cpf00290] D CPF_1368 tdcB; threonine dehydratase, catabolic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CPF_1772 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:cpf00300] D CPF_1932 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CPF_2160 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CPF_2161 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CPF_2162 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CPF_2165 putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D CPF_1421 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CPF_2100 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CPF_0576 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CPF_2116 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CPF_2115 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:cpf00310] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:cpf00220] D CPF_0162 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D CPF_0683 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CPF_0682 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CPF_0161 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D CPF_0571 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2251 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_2897 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CPF_2898 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CPF_0164 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CPF_1770 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:cpf00330] D CPF_0751 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D CPF_0750 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CPF_0528 Orn/Lys/Arg decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D CPF_0530 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D CPF_0529 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CPF_0527 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_2969 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D CPF_2904 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CPF_2903 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:cpf00340] D CPF_1312 hisK; histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D CPF_2137 putative histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D CPF_1229 histidinol phosphate phosphatase family protein K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D CPF_0801 sensory box protein/histidinol phosphate phosphatase family protein K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D CPF_0378 histidine decarboxylase, pyruvoyl type K01590 hdc; histidine decarboxylase [EC:4.1.1.22] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:cpf00350] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00360 Phenylalanine metabolism [PATH:cpf00360] D CPF_2581 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CPF_0811 acetyltransferase, GNAT family K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] C 00380 Tryptophan metabolism [PATH:cpf00380] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cpf00400] D CPF_0687 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CPF_0688 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CPF_0695 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D CPF_0694 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D CPF_0689 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D CPF_0690 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D CPF_0691 chorismate mutase K04516 AROA1; chorismate mutase [EC:5.4.99.5] D CPF_1668 ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:cpf00410] D CPF_2315 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_2584 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CPF_0092 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:cpf00430] D CPF_2315 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CPF_1978 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CPF_1977 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CPF_0208 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism D CPF_0981 conserved hypothetical protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:cpf00450] D CPF_0169 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CPF_1670 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CPF_2750 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CPF_0785 pyridine nucleotide-disulphide oxidoreductase family protein K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CPF_2663 pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CPF_2374 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D CPF_2373 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CPF_2846 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_2847 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:cpf00460] D CPF_2005 L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CPF_2233 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CPF_2184 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:cpf00470] D CPF_1317 alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_0861 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_1522 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_0816 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_0571 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2251 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2893 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CPF_2774 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CPF_2100 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CPF_0576 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:cpf00480] D CPF_1825 gshAB; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CPF_2824 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CPF_2403 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CPF_2512 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CPF_0904 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D CPF_1198 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D CPF_0529 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:cpf00511] D CPF_0721 nanI; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_0532 nanJ; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_0985 nanH; sialidase K01186 NEU1; sialidase-1 [EC:3.2.1.18] D CPF_1474 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0766 beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_1221 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_0826 glycosyl hydrolase, family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CPF_1614 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_1103 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_2337 putative alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D CPF_0848 glycosyl hydrolase, family 38 K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D CPF_2130 calx-beta domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D CPF_2129 fibronectin type III domain protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cpf00541] D CPF_0483 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0487 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CPF_0282 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_0486 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CPF_0479 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0597 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0600 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0482 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0480 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0598 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0481 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CPF_0599 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CPF_1391 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CPF_2607 nucleotidyl transferase family protein K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CPF_2813 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CPF_2461 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 00550 Peptidoglycan biosynthesis [PATH:cpf00550] D CPF_2933 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_2449 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_0342 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CPF_2816 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CPF_2774 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CPF_2116 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CPF_1522 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_0816 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_2115 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CPF_1809 putative undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CPF_1950 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CPF_1390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_0795 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_1280 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_2114 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CPF_2320 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CPF_2218 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CPF_2395 putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CPF_2117 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_0544 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_2134 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_0340 putative penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CPF_2061 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2056 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2376 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2231 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CPF_1392 UDP-N-acetylmuramyl tripeptide synthetase MurC homolog K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D CPF_1393 glutamine amidotransferase, CobB/CobQ family K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:cpf00552] D CPF_1390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_0795 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_1280 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_2125 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D CPF_2378 cell envelope-related transcriptional attenuator domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CPF_2170 cell envelope-related transcriptional attenuator domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CPF_0280 putative transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CPF_0612 putative transcriptional regulator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CPF_2470 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_0710 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_2501 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D CPF_0917 licD family protein K07271 licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:cpf00543] D CPF_1766 putative alginate biosynthesis protein AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI D CPF_1528 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:cpf00730] D CPF_0670 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D CPF_1545 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CPF_1855 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D CPF_1667 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2039 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_1666 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CPF_1853 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D CPF_0106 putative thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D CPF_2073 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CPF_1854 thiG; thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10] D CPF_1544 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CPF_1852 thiamine monophosphate synthase family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CPF_1543 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CPF_1990 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CPF_1988 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D CPF_2693 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CPF_2870 tenA; transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:cpf00740] D CPF_0548 ribA; riboflavin biosynthesis protein RibA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CPF_0546 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CPF_0549 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D CPF_0547 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D CPF_1936 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D CPF_1544 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CPF_2065 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CPF_2150 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:cpf00750] D CPF_2618 putative pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] C 00760 Nicotinate and nicotinamide metabolism [PATH:cpf00760] D CPF_0383 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CPF_0382 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D CPF_0384 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D CPF_1417 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D CPF_0386 purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_2818 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_1652 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D CPF_2206 5'-nucleotidase family protein/Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_2207 Ser/Thr protein phosphatase family protein K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5] D CPF_2380 nadD; nicotinate nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D CPF_0575 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D CPF_0749 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D CPF_1314 nadE; glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D CPF_0249 NAD-dependent deacetylase, Sir2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D CPF_2071 NAD(+)/NADH kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:cpf00770] D CPF_0788 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D CPF_2784 putative transcriptional activator K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D CPF_1999 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D CPF_1982 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D CPF_2249 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D CPF_0287 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D CPF_1772 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:cpf00780] D CPF_1327 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CPF_1326 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_2182 3-oxoacyl-(acyl-carrier-protein) reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_1329 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CPF_1794 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D CPF_2775 radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D CPF_1795 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D CPF_0664 birA; BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:cpf00790] D CPF_1274 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D CPF_1277 folBK; dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D CPF_1276 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D CPF_0051 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CPF_2174 folC; FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D CPF_0548 ribA; riboflavin biosynthesis protein RibA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CPF_1271 pabA; para-aminobenzoate synthase glutamine amidotransferase, component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D CPF_1272 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D CPF_1273 putative branched-chain amino acid aminotransferase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D CPF_1168 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D CPF_2045 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CPF_2340 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CPF_2343 molybdenum cofactor synthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D CPF_2048 moeA; molybdenum cofactor biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CPF_2047 molybdopterin-guanine dinucleotide biosynthesis protein homolog K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:cpf00670] D CPF_0051 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CPF_2785 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D CPF_2077 folD; folD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CPF_2123 methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D CPF_2184 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CPF_0676 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CPF_0677 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CPF_1996 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CPF_1005 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CPF_1670 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CPF_2735 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D CPF_2633 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:cpf00860] D CPF_1255 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CPF_1690 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D CPF_1685 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CPF_1686 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CPF_1688 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D CPF_1687 hemD; uroporphyrinogen-III methyltransferase/synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D CPF_1689 siroheme synthase family protein K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D CPF_1436 cbiK; sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D CPF_1431 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D CPF_1428 cobJ; precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D CPF_1430 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D CPF_1429 cbiG; cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D CPF_1427 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D CPF_1434 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D CPF_1432 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D CPF_1433 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating) K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D CPF_1435 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D CPF_2164 putative cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CPF_1300 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D CPF_1294 cobB; cobalamin biosynthesis protein CobB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D CPF_1290 hypothetical protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D CPF_1291 cobS; cobalamin-5-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D CPF_1289 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D CPF_1293 phosphoglycerate mutase family protein K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D CPF_1623 aminotransferase family protein K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D CPF_1295 putative L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D CPF_0897 eutT; cob(I)yrinic acid a,c-diamide adenosyltransferase K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154] D CPF_0205 heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:cpf00900] D CPF_2073 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CPF_1948 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D CPF_2739 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D CPF_2476 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D CPF_2616 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D CPF_1946 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D CPF_1341 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2074 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CPF_1809 putative undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CPF_1950 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CPF_0292 putative transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CPF_0293 putative transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:cpf00523] D CPF_0479 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0597 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0600 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0482 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0480 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0598 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0481 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CPF_0599 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics [PATH:cpf01055] D CPF_2132 FMN-dependent dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D CPF_0600 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0482 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:cpf00311] D CPF_1848 axe1; acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41] D CPF_1388 putative beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:cpf00332] D CPF_2904 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CPF_2903 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:cpf00261] D CPF_2132 FMN-dependent dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D CPF_1932 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CPF_2160 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CPF_2161 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CPF_2162 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:cpf00521] D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CPF_2127 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CPF_0085 myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CPF_0088 oxidoreductase, Gfo/Idh/MocA family K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CPF_0479 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0597 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0600 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0482 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0480 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0598 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D CPF_0481 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D CPF_0599 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D CPF_0076 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:cpf00525] D CPF_0479 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0597 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CPF_0600 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CPF_0482 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis D CPF_1325 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CPF_1326 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_2182 3-oxoacyl-(acyl-carrier-protein) reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CPF_1973 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D CPF_2435 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:cpf00362] D CPF_2581 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D CPF_2228 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:cpf00625] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CPF_2610 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CPF_0757 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation D CPF_0757 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation D CPF_2051 narB; nitrate reductase electron transfer subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00642 Ethylbenzene degradation C 00643 Styrene degradation D CPF_0091 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:cpf00626] D CPF_0451 alcohol dehydrogenase, iron-containing K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D CPF_2855 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:cpf03020] D CPF_2722 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CPF_2721 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CPF_2685 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CPF_2000 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D CPF_1408 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:cpf03010] D CPF_2405 ribosomal protein S1 family K02945 RP-S1; small subunit ribosomal protein S1 D CPF_1954 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CPF_2708 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CPF_2668 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CPF_2686 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CPF_2697 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CPF_2978 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CPF_2718 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CPF_2700 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CPF_2678 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CPF_2715 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CPF_2687 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CPF_2719 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CPF_2688 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CPF_2701 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CPF_1935 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CPF_1966 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CPF_2705 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CPF_2976 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CPF_2710 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CPF_2299 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CPF_2280 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CPF_2725 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CPF_2711 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CPF_2714 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CPF_2713 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CPF_2702 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CPF_2699 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CPF_2723 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CPF_2972 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CPF_2724 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CPF_2726 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CPF_2679 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CPF_2704 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CPF_2695 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CPF_2707 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CPF_2684 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CPF_2698 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CPF_1962 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CPF_2144 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CPF_2385 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CPF_2709 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CPF_2712 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CPF_2703 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CPF_2128 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CPF_2383 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CPF_1987 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CPF_2706 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CPF_2696 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CPF_2469 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CPF_1975 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CPF_2729 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CPF_2997 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CPF_2145 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CPF_2689 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CPF_2720 ribosomal protein L7AE family, homolog K07590 RP-L7A; large subunit ribosomal protein L7A D CPF_2998 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3010 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3004 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3013 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3007 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3001 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3021 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3018 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_2999 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3011 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3008 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3002 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3005 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3014 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3017 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3020 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3000 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3019 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3015 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3012 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3009 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3003 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3006 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:cpf00970] D CPF_0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2507 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2773 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2520 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2531 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2523 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2622 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2513 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0073 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2505 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2780 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2771 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2942 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2948 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2945 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2153 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CPF_2769 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CPF_2518 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_2529 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_2621 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_0573 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2944 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2947 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2950 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2515 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2525 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2628 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2155 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2521 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2629 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2154 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2524 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2514 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2532 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2627 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2620 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_0944 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2519 tRNA-His K14226 tRNA-His; tRNA His D CPF_2530 tRNA-His K14226 tRNA-His; tRNA His D CPF_2506 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CPF_2772 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CPF_0679 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2796 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2793 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2516 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2526 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2630 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_1633 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2246 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2619 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2626 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_0068 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2517 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2527 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2528 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_0008 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0229 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0489 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2792 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2795 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2791 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2794 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0193 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_2156 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_2770 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_0260 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_0272 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_2533 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_2522 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0019 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_2437 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2442 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2941 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2439 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2731 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_0946 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2420 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2419 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2436 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2441 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2438 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2440 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2943 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2946 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2949 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2120 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CPF_1255 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CPF_0626 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CPF_2033 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_0714 DHHA1 domain protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_2188 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CPF_0770 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CPF_2823 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CPF_2779 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CPF_2631 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CPF_0014 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CPF_2373 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CPF_2737 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CPF_2846 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_2847 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_1996 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CPF_1005 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CPF_2175 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CPF_0657 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CPF_2865 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CPF_2781 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CPF_1915 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CPF_2738 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CPF_2189 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CPF_2140 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CPF_2139 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CPF_0633 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CPF_0614 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:cpf03060] D CPF_2694 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CPF_2728 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CPF_1503 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CPF_2197 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CPF_2196 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CPF_2964 putative preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2200 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_0405 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2994 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CPF_2429 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CPF_1967 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CPF_1969 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CPF_1804 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0312 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0432 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0578 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_2579 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D CPF_0493 sipW; signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:cpf04122] D CPF_1667 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2039 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2037 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CPF_2045 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CPF_1308 thiosulfate sulfurtransferase homolog K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11] D CPF_2340 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CPF_2343 molybdenum cofactor synthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D CPF_1666 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CPF_1856 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D CPF_1855 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:cpf03018] D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CPF_1934 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CPF_1502 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CPF_1650 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_0855 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_1768 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_0327 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_1542 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_2471 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CPF_1926 HDIG/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D CPF_2028 RNA-metabolising metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_2290 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CPF_0241 dnaK family protein K04043 dnaK; molecular chaperone DnaK D CPF_2573 groL; chaperonin, GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CPF_1361 RNA chaperone Hfq K03666 hfq; host factor-I protein B B 09124 Replication and repair C 03030 DNA replication [PATH:cpf03030] D CPF_1655 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1920 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1945 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CPF_0052 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CPF_2759 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CPF_2300 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CPF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CPF_2970 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CPF_1597 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CPF_2265 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1960 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:cpf03410] D CPF_2577 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CPF_1525 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CPF_0258 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CPF_2901 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CPF_1377 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CPF_1335 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_2322 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:cpf03420] D CPF_2807 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CPF_0337 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CPF_0300 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CPF_0341 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CPF_0426 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2542 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_0580 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1416 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1872 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CPF_1408 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:cpf03430] D CPF_1358 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CPF_2135 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D CPF_1359 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CPF_1016 type II site-specific deoxyribonuclease K03573 mutH; DNA mismatch repair protein MutH D CPF_0426 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2542 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_0580 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1416 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1872 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2076 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CPF_2075 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CPF_2322 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1945 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CPF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CPF_0052 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CPF_2300 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CPF_2759 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CPF_1655 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1920 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CPF_1606 putative adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:cpf03440] D CPF_2322 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CPF_2271 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CPF_0054 recR; recombination protein RecR K06187 recR; recombination protein RecR D CPF_1927 recA; recA protein K03553 recA; recombination protein RecA D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_2204 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CPF_2203 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CPF_1984 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CPF_2433 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CPF_1945 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CPF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CPF_0052 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CPF_2300 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CPF_2759 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CPF_1655 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1920 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1998 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:cpf02010] D CPF_2342 modA; molybdate ABC transporter, molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CPF_2341 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CPF_0440 bacterial extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CPF_0223 putative iron compound ABC transporter, iron compound-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CPF_0441 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D CPF_0442 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CPF_2226 potD; spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CPF_2225 potC; spermidine/putrescine ABC transporter, permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein D CPF_2224 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein D CPF_2223 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CPF_0538 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CPF_0537 glycine betaine/L-proline transport, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CPF_2654 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CPF_2652 putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D CPF_2651 putative maltose/maltodextrin ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D CPF_2650 putative maltose/maltodextrin ABC transporter, permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D CPF_1113 sugar ABC transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D CPF_1114 sugar ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D CPF_1115 sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D CPF_1285 conserved hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_2335 bacterial extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1283 conserved hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1466 putative lipoprotein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1077 bacterial extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_2339 ABC transporter, permease protein K17319 lplB; putative aldouronate transport system permease protein D CPF_2338 ABC transporter, permease protein K17320 lplC; putative aldouronate transport system permease protein D CPF_0556 ABC transporter, solute-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein D CPF_0557 ABC transporter, permease protein K10201 ngcF; N-acetylglucosamine transport system permease protein D CPF_0558 ABC transporter, permease protein K10202 ngcG; N-acetylglucosamine transport system permease protein D CPF_1832 lipoprotein, BMP family K07335 bmpA; basic membrane protein A and related proteins D CPF_1516 lipoprotein, BMP family K07335 bmpA; basic membrane protein A and related proteins D CPF_1830 ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D CPF_1829 ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CPF_1831 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CPF_1881 rbsC; ribose ABC transporter, permease protein K10440 rbsC; ribose transport system permease protein D CPF_1882 rbsA; ribose ABC transporter, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CPF_1883 rbsD; ribose ABC transporter, ribose-binding protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D CPF_1548 putative galactoside ABC transporter, galactoside-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D CPF_1550 mglC; galactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein D CPF_1549 mglA; galactoside ABC transporter, ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D CPF_0617 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_0618 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_0619 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CPF_0620 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CPF_0621 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CPF_2350 amino acid ABC transporter, amino acid-binding protein/permease protein, His/Glu/Gln/Arg/opine family K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CPF_2349 amino acid ABC transporter, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein D CPF_0581 amino acid ABC transporter, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D CPF_0582 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein D CPF_0583 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D CPF_2538 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CPF_2413 ABC transporter, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CPF_1710 putative zinc ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D CPF_1709 putative zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CPF_0186 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D CPF_0185 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CPF_0187 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CPF_0188 cbiO; cobalt ABC transporter, ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D CPF_1834 putative cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CPF_2681 cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CPF_2683 cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CPF_2682 cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CPF_0263 ABC-2 type transporter, permease protein K09692 tagG; teichoic acid transport system permease protein D CPF_0264 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D CPF_0267 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D CPF_0297 putative cell division protein K09811 ftsX; cell division transport system permease protein D CPF_0296 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CPF_1777 ABC transporter, permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_1776 ABC transporter, permease/ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0366 ABC transporter, permease/ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0506 ABC transporter, permease/ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0367 ABC transporter, permease/ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0507 ABC transporter, permease/ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump C 02060 Phosphotransferase system (PTS) [PATH:cpf02060] D CPF_2666 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CPF_1923 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D CPF_2412 ptsG; PTS system, glucose-specific IIBC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CPF_0070 putative PTS system, N-acetylglucosamine-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CPF_0071 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_1070 PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_0422 PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CPF_1785 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CPF_0541 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CPF_2902 PTS system, lactose/cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CPF_2493 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CPF_1717 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2965 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2968 PTS system, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0818 PTS system, mannose/fructose/sorbose family, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0819 PTS system, mannose/fructose/sorbose family, IIC component K02795 manY; mannose PTS system EIIC component D CPF_1715 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_2967 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_0820 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component D CPF_1714 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_2966 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_1716 PTS system, IIB component K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D CPF_0404 PTS system, mannose/fructose/sorbose family, IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CPF_0401 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CPF_0402 PTS system, mannose/fructose/sorbose family, IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CPF_0403 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D CPF_0501 PTS system, L-Ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0644 putative PTS system, ascorbate-specific IIA component SgaA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0646 putative PTS system, ascorbate-specific IIB component SgaB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0502 PTS system, lactose/cellobiose-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0645 putative PTS system, ascorbate-specific IIC component SgaT K03475 ulaA; ascorbate PTS system EIIC component D CPF_0503 PTS system, L-Ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CPF_0564 fruA; PTS system, fructose-specific, IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CPF_0565 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:cpf03070] D CPF_2197 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CPF_2196 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CPF_2728 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CPF_1503 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CPF_2694 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CPF_2964 putative preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2200 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_0405 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2994 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CPF_2429 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CPF_1969 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CPF_1967 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:cpf02020] D CPF_2010 sensory box histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CPF_0623 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CPF_2504 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CPF_0617 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_0618 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_2494 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D CPF_1213 kdpD; sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CPF_1214 kdpE; DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CPF_1210 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D CPF_1211 kdpB; K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D CPF_1212 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D CPF_2811 DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D CPF_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CPF_1456 putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D CPF_1140 sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D CPF_1139 DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D CPF_2181 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CPF_1057 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CPF_1056 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D CPF_2067 spo0A; Spo0A protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D CPF_0865 AgrB family protein K07813 agrB; accessory gene regulator B D CPF_1813 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CPF_1812 putative lipoprotein K07800 agrD; AgrD protein D CPF_0863 putative sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_1513 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CPF_2568 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2567 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2566 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2572 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_0571 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_2251 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CPF_0554 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_2345 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_1112 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_2344 DNA-binding response regulator, AraC family K07720 yesN; two-component system, response regulator YesN D CPF_1111 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D CPF_2461 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:cpf02024] D CPF_0171 luxS; autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CPF_1361 RNA chaperone Hfq K03666 hfq; host factor-I protein D CPF_1214 kdpE; DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CPF_2315 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CPF_2317 glutamate:gamma aminobutyrate antiporter family protein K20265 gadC; glutamate:GABA antiporter D CPF_1507 glutamate:gamma-aminobutyrate antiporter family protein K20265 gadC; glutamate:GABA antiporter D CPF_1477 ABC transporter, substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D CPF_1479 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D CPF_1480 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D CPF_1478 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D CPF_0546 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CPF_2936 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CPF_1812 putative lipoprotein K07800 agrD; AgrD protein D CPF_0865 AgrB family protein K07813 agrB; accessory gene regulator B D CPF_1813 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CPF_0863 putative sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CPF_0042 plc; phospholipase C K16619 plc; phospholipase C / alpha-toxin [EC:3.1.4.3] D CPF_0156 pfo; perfringolysin O K11031 slo; thiol-activated cytolysin D CPF_1140 sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D CPF_1139 DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D CPF_2538 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CPF_2555 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CPF_2554 oligopeptide/dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CPF_2553 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CPF_2552 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CPF_2551 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CPF_2994 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CPF_2728 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CPF_1503 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CPF_2694 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CPF_2964 putative preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2200 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_0405 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2429 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CPF_1969 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CPF_1967 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CPF_2067 spo0A; Spo0A protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis D CPF_1548 putative galactoside ABC transporter, galactoside-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein C 02040 Flagellar assembly [PATH:cpf02040] D CPF_2264 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CPF_1513 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D CPF_1670 homocysteine S-methyltransferase family protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:cpf01501] D CPF_0259 putative beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CPF_2538 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CPF_1388 putative beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CPF_2218 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CPF_2395 putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:cpf01502] D CPF_2181 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CPF_1522 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_0816 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_1317 alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_0861 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_2115 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CPF_2114 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CPF_2320 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cpf01503] D CPF_2676 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_0111 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_1753 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_2494 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D CPF_1456 putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:cpf01000] C 01001 Protein kinases [BR:cpf01001] D CPF_1991 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D CPF_1023 conserved hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D CPF_0465 capsular polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CPF_2010 sensory box histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CPF_1213 kdpD; sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CPF_1140 sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D CPF_2181 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CPF_1057 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CPF_0863 putative sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CPF_0554 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_2345 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_1112 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_0889 sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:cpf01009] D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D CPF_1992 protein phosphatase 2C family protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:cpf01002] D CPF_2571 Type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CPF_2298 gpr; spore protease K06012 gpr; spore protease [EC:3.4.24.78] D CPF_2016 spoIIGA; Sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D CPF_0840 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8] D CPF_1678 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D CPF_2557 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CPF_0274 SagA protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CPF_0674 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CPF_2636 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CPF_2324 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D CPF_0705 cbh; choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D CPF_2615 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0772 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0148 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0212 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0124 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0773 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0492 sortase B K08600 srtB; sortase B [EC:3.4.22.71] D CPF_0865 AgrB family protein K07813 agrB; accessory gene regulator B D CPF_1813 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CPF_0998 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CPF_0988 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CPF_0131 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CPF_1850 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CPF_1084 putative membrane protein K07052 K07052; CAAX protease family protein D CPF_1706 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D CPF_0166 colA; microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CPF_1656 putative peptidase K06972 PITRM1; presequence protease [EC:3.4.24.-] D CPF_2824 cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CPF_2183 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CPF_1421 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CPF_0029 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D CPF_2778 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D CPF_2403 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CPF_2512 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CPF_1287 amidohydrolase family protein K12940 abgA; aminobenzoyl-glutamate utilization protein A D CPF_1635 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CPF_2692 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CPF_2854 pepP; Xaa-pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CPF_0866 metallopeptidase, M24 family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CPF_2253 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D CPF_0868 thermophilic metalloprotease family protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D CPF_2665 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D CPF_2786 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CPF_0579 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CPF_1252 aminopeptidase, M42 family K01269 yhfE; aminopeptidase [EC:3.4.11.-] D CPF_2389 peptidase, M50 family K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D CPF_1947 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CPF_2608 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CPF_2494 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D CPF_1123 cell wall-associated serine proteinase K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D CPF_2937 subtilase family protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D CPF_2061 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2056 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2376 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2231 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_1647 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CPF_1644 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CPF_2971 ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CPF_1645 lonB; ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D CPF_1364 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CPF_1804 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0312 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0432 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_0578 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CPF_2579 signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D CPF_0493 sipW; signal peptidase I K13280 SEC11; signal peptidase I [EC:3.4.21.89] D CPF_0298 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CPF_2478 cphB; cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D CPF_1705 rhomboid family protein K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D CPF_2068 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D CPF_2768 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CPF_2777 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CPF_1585 phage prohead protease, HK97 family K06904 GP4; Escherichia/Staphylococcus phage prohead protease D CPF_2024 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-] D CPF_2136 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-] D CPF_0324 TldD/PmbA family protein K03592 pmbA; PmbA protein D CPF_0323 TldD/PmbA family protein K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:cpf01003] D CPF_2470 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_0710 putative monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CPF_2218 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CPF_2125 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 01005 Lipopolysaccharide biosynthesis proteins [BR:cpf01005] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cpf01011] D CPF_2933 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_2449 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CPF_0342 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CPF_2816 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CPF_2774 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CPF_2116 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CPF_1522 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_0816 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CPF_1317 alanine racemase family protein K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_0861 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CPF_2893 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CPF_2768 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CPF_2777 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CPF_2114 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CPF_2320 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CPF_1390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_0795 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_1280 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CPF_2218 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CPF_2395 putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CPF_2117 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_0544 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_2134 spoVD; stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CPF_0340 putative penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CPF_2061 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2056 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2376 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_2231 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CPF_0274 SagA protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CPF_2615 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0772 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0148 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0212 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0124 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0773 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CPF_0492 sortase B K08600 srtB; sortase B [EC:3.4.22.71] D CPF_2248 transglycosylase, SLT family K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CPF_2026 conserved hypothetical protein TIGR00247 K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D CPF_2448 spoIID; stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D CPF_2676 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_0111 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_1753 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:cpf01004] D CPF_1325 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CPF_1324 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CPF_1327 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CPF_1326 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_2182 3-oxoacyl-(acyl-carrier-protein) reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CPF_1329 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CPF_2331 alcohol dehydrogenase, short-chain family K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CPF_2498 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CPF_1974 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CPF_1526 plsD; sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CPF_1671 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:cpf01008] D CPF_2132 FMN-dependent dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] C 01006 Prenyltransferases [BR:cpf01006] D CPF_2074 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CPF_1809 putative undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CPF_1950 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CPF_1360 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:cpf01007] D CPF_1255 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CPF_0626 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CPF_0633 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CPF_0614 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CPF_2737 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CPF_1915 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CPF_2846 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_2847 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_2865 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CPF_2175 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CPF_0657 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CPF_2781 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CPF_2188 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CPF_2823 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CPF_0770 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CPF_2189 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CPF_2779 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CPF_0014 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CPF_2738 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CPF_2631 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CPF_2033 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_0714 DHHA1 domain protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_2140 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CPF_2139 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CPF_1924 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CPF_0707 aminotransferase, class I/II K10907 K10907; aminotransferase [EC:2.6.1.-] D CPF_2163 aminotransferase, classes I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D CPF_1685 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CPF_1772 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:cpf00194] D CPF_2451 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CPF_2452 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CPF_2453 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CPF_2454 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CPF_2455 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CPF_2456 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CPF_2457 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CPF_2458 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CPF_2459 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:cpf03000] D CPF_1017 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1018 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0139 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0566 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CPF_0642 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CPF_2446 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D CPF_0079 putative transcriptional regulator IolR K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D CPF_2269 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D CPF_2863 putative catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CPF_2649 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CPF_1547 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CPF_1879 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CPF_2817 sugar-binding transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CPF_0407 sugar-binding transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D CPF_1784 scrR; sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D CPF_0543 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D CPF_2745 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CPF_2963 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CPF_0306 FCD domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CPF_0034 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D CPF_1906 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CPF_1494 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D CPF_1082 transcriptional regulator, MarR family K18909 mepR; MarR family transcriptional regulator, repressor for mepA D CPF_1208 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D CPF_2029 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CPF_1420 fur-3; transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D CPF_0778 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CPF_1250 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CPF_0781 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CPF_0336 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator D CPF_2040 rrf2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D CPF_0833 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CPF_2588 putative cadmium resistance transcriptional regulator CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D CPF_0699 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D CPF_2348 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D CPF_0664 birA; BirA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CPF_2815 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D CPF_0851 putative carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D CPF_2586 DNA-binding protein K01926 rex; redox-sensing transcriptional repressor D CPF_1955 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CPF_1032 DNA-binding protein K07729 K07729; putative transcriptional regulator D CPF_0069 transcription antiterminator K03480 glcT; transcriptional antiterminator D CPF_0195 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CPF_2187 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CPF_0277 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D CPF_2805 spoVT; stage V sprulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D CPF_2987 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CPF_2877 glpP; glycerol uptake operon antiterminator K02443 glpP; glycerol uptake operon antiterminator D CPF_2070 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CPF_0165 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CPF_2292 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CPF_2870 tenA; transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D CPF_2754 transcriptional repressor K03708 ctsR; transcriptional regulator of stress and heat shock response D CPF_1512 sugar-binding domain protein K05311 cggR; central glycolytic genes regulator D CPF_2103 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CPF_2012 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR C 03021 Transcription machinery [BR:cpf03021] D CPF_1408 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D CPF_2685 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CPF_2722 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CPF_2721 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CPF_2000 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CPF_2264 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CPF_1092 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CPF_0539 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CPF_0712 RNA polymerase sigma-70 factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CPF_2014 sigG; RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CPF_2015 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CPF_2021 RNA polymerase sigma-70 factor family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CPF_2305 sigF; RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CPF_2732 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D CPF_1513 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CPF_1943 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CPF_2078 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D CPF_2727 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CPF_1023 conserved hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D CPF_2782 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D CPF_1471 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D CPF_2471 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:cpf03019] D CPF_2386 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CPF_1972 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CPF_2028 RNA-metabolising metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D CPF_1926 HDIG/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D CPF_1502 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CPF_0027 yhaM; 3'-5' exoribonuclease YhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D CPF_1650 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_0855 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_1768 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_0327 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_1542 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CPF_1934 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CPF_2471 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CPF_0350 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CPF_2290 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CPF_0241 dnaK family protein K04043 dnaK; molecular chaperone DnaK D CPF_2573 groL; chaperonin, GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CPF_1361 RNA chaperone Hfq K03666 hfq; host factor-I protein D CPF_0343 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:cpf03011] D CPF_2405 ribosomal protein S1 family K02945 RP-S1; small subunit ribosomal protein S1 D CPF_1954 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CPF_2708 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CPF_2668 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CPF_2686 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CPF_2697 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CPF_2978 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CPF_2718 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CPF_2700 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CPF_2678 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CPF_2715 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CPF_2687 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CPF_2719 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CPF_2688 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CPF_2701 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CPF_1935 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CPF_1966 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CPF_2705 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CPF_2976 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CPF_2710 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CPF_2299 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CPF_2280 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CPF_2725 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CPF_2711 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CPF_2714 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CPF_2713 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CPF_2702 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CPF_2699 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CPF_2972 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CPF_2724 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CPF_2726 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CPF_2723 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CPF_2679 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CPF_2704 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CPF_2695 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CPF_2707 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CPF_2684 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CPF_2698 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CPF_1962 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CPF_2144 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CPF_2385 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CPF_2709 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CPF_2712 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CPF_2703 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CPF_2383 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CPF_1987 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CPF_2706 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CPF_2696 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CPF_2469 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CPF_1975 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CPF_2729 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CPF_2997 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CPF_2145 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CPF_2689 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CPF_2128 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CPF_2720 ribosomal protein L7AE family, homolog K07590 RP-L7A; large subunit ribosomal protein L7A D CPF_3000 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3019 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3015 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3012 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3009 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3003 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3006 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_2998 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3010 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3004 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3013 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3007 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3001 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3021 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3018 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_2999 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3011 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3008 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3002 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3005 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3014 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3017 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3020 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:cpf03009] D CPF_1972 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CPF_2272 era; GTP-binding protein Era K03595 era; GTPase D CPF_2382 obg; spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D CPF_1943 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CPF_2078 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D CPF_2727 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CPF_2546 RNA pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D CPF_2840 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CPF_1994 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CPF_1983 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CPF_2283 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CPF_2989 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CPF_2119 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CPF_0276 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CPF_2072 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CPF_2734 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CPF_2927 alpha/beta knot family protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CPF_2872 putative methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CPF_1993 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CPF_0357 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CPF_1336 rluB; ribosomal small subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CPF_1414 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CPF_2377 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CPF_2104 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CPF_2613 RNA pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D CPF_1151 RNA pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D CPF_2424 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D CPF_0066 acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D CPF_1964 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D CPF_1929 MiaB-like tRNA modifying enzyme YliG, TIGR01125 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D CPF_2360 putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CPF_2284 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CPF_2386 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CPF_2031 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D CPF_2736 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D CPF_1650 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_0855 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_1768 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CPF_1990 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CPF_2008 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D CPF_1961 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A D CPF_2215 GTP binding protein K03665 hflX; GTPase D CPF_2464 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CPF_2193 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CPF_1939 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D CPF_1944 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP D CPF_0003 S4 domain protein K14761 rlbA; ribosome-associated protein D CPF_2275 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor D CPF_2381 putative RNA-binding protein K07574 yhbY; RNA-binding protein D CPF_2430 raiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D CPF_2121 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D CPF_1976 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:cpf03016] D CPF_1613 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D CPF_0026 polyA polymerase family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D CPF_1255 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CPF_2738 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CPF_2865 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CPF_0657 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CPF_2846 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_2847 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CPF_0626 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CPF_1915 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CPF_2781 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CPF_2188 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CPF_2033 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_0714 DHHA1 domain protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CPF_2823 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CPF_2779 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CPF_2631 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CPF_0014 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CPF_2737 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CPF_2175 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CPF_2189 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CPF_2140 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CPF_2139 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CPF_0633 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CPF_0614 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CPF_2192 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D CPF_2281 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CPF_0427 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CPF_2680 truA2; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CPF_1248 truA1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CPF_1937 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CPF_1667 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2039 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2464 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CPF_1360 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CPF_2992 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CPF_2991 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CPF_2374 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D CPF_2996 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CPF_2536 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D CPF_0145 kptA; RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D CPF_0770 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CPF_1566 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D CPF_1609 ybaK/prolyl-tRNA synthetases associated domain protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D CPF_0037 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CPF_2783 putative dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CPF_1349 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CPF_2282 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D CPF_1963 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CPF_2262 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D CPF_1518 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CPF_2141 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family D CPF_2037 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CPF_1247 ExsB family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CPF_0132 HesB-like domain protein K13628 iscA; iron-sulfur cluster assembly protein D CPF_2202 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CPF_1527 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CPF_2327 ybbB; tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D CPF_2201 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CPF_1666 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CPF_2788 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CPF_2423 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CPF_2496 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CPF_2422 conserved hypothetical protein TIGR00150 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CPF_0064 HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D CPF_1979 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D CPF_1502 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CPF_1934 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:cpf03012] D CPF_1940 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CPF_2146 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CPF_1721 ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CPF_1953 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CPF_2716 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2730 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2717 fusA; translation elongation factor G K02355 fusA; elongation factor G D CPF_0074 fusA; translation elongation factor G K02355 fusA; elongation factor G D CPF_2372 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D CPF_2466 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CPF_1951 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D CPF_2808 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CPF_2690 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CPF_2089 efp; translation elongation factor P K02356 efp; elongation factor P D CPF_2428 prfB; peptide chain release factor 2, programmed frameshift K02836 prfB; peptide chain release factor 2 D CPF_0592 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:cpf03110] D CPF_1681 clpB; clpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D CPF_2751 clpC; negative regulator of genetic competence MecB/ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D CPF_1646 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D CPF_2290 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CPF_0241 dnaK family protein K04043 dnaK; molecular chaperone DnaK D CPF_2573 groL; chaperonin, GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CPF_2289 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CPF_2157 chaperonin, 33 kDa K04083 hslO; molecular chaperone Hsp33 D CPF_2291 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CPF_2574 groS; chaperonin, 10 kDa K04078 groES; chaperonin GroES D CPF_2494 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D CPF_2786 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CPF_0579 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CPF_2458 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CPF_1123 cell wall-associated serine proteinase K01361 E3.4.21.96; lactocepin [EC:3.4.21.96] D CPF_1614 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_1103 glycosyl hydrolase, family 20 K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CPF_2891 peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D CPF_1819 peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D CPF_2806 putative foldase protein PrsA K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D CPF_0262 peptidyl-prolyl cis-trans isomerase family protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D CPF_2664 trx; thioredoxin K03671 TXN; thioredoxin D CPF_0737 trx; thioredoxin K03671 TXN; thioredoxin D CPF_2747 glutaredoxin-like protein, YruB-family K03676 grxC; glutaredoxin 3 C 04131 Membrane trafficking [BR:cpf04131] D CPF_2227 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CPF_2337 putative alpha-mannosidase K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D CPF_0848 glycosyl hydrolase, family 38 K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24] D CPF_1511 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CPF_1281 pyruvate kinase barrel domain protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2404 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_0351 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:cpf04121] C 03051 Proteasome [BR:cpf03051] D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:cpf03032] D CPF_1017 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1018 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0139 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_2802 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CPF_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CPF_2970 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CPF_1597 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CPF_2940 putative DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC D CPF_2265 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1945 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CPF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CPF_2300 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CPF_2759 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CPF_1655 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1920 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_0052 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CPF_1960 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CPF_1606 putative adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CPF_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CPF_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CPF_2325 DNA gyrase/topoisomerase IV, A subunit family protein K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CPF_2326 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CPF_1956 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CPF_2238 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D CPF_1760 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:cpf03036] D CPF_1017 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1018 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0139 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1972 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CPF_2802 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CPF_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CPF_1361 RNA chaperone Hfq K03666 hfq; host factor-I protein D CPF_1970 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D CPF_2060 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D CPF_2059 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D CPF_2019 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CPF_0296 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CPF_1930 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CPF_2118 putative cell division protein FtsL K03586 ftsL; cell division protein FtsL D CPF_2112 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D CPF_2113 spoVE; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D CPF_0297 putative cell division protein K09811 ftsX; cell division transport system permease protein D CPF_2018 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CPF_2138 hypothetical protein K09888 zapA; cell division protein ZapA D CPF_2676 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_0111 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_1753 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_2394 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CPF_2393 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CPF_2392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CPF_2105 putative cell division protein DivIVA K04074 divIVA; cell division initiation protein D CPF_2107 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF D CPF_2398 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2445 mbl; mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2397 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CPF_2396 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D CPF_2391 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CPF_2988 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D CPF_2987 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CPF_2325 DNA gyrase/topoisomerase IV, A subunit family protein K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CPF_2326 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CPF_2991 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CPF_2989 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CPF_2063 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D CPF_2803 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D CPF_0838 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D CPF_1643 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein D CPF_0345 conserved hypothetical protein K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:cpf03400] D CPF_0326 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CPF_0258 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CPF_2901 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CPF_2577 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CPF_1525 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CPF_1408 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D CPF_1031 putative mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CPF_1722 deoxyuridine 5'-triphosphate nucleotidohydrolase family protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CPF_0669 dut; deoxyuridine 5-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CPF_1377 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CPF_1335 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CPF_2322 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CPF_2541 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CPF_2250 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CPF_0337 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CPF_0300 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CPF_0341 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CPF_0426 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2542 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_0580 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1416 putative ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_1872 ATP-dependent DNA helicase, UvrD/REP family K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CPF_2722 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CPF_2721 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CPF_2685 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CPF_2000 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CPF_2807 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CPF_1358 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CPF_2135 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D CPF_1359 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CPF_1016 type II site-specific deoxyribonuclease K03573 mutH; DNA mismatch repair protein MutH D CPF_2076 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CPF_2075 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CPF_1945 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CPF_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CPF_2300 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CPF_2759 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CPF_1655 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_1920 putative DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CPF_0052 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1606 putative adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CPF_2433 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CPF_1927 recA; recA protein K03553 recA; recombination protein RecA D CPF_2204 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CPF_2203 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CPF_1998 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CPF_0207 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D CPF_0206 putative nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D CPF_2416 Ser/Thr protein phosphatase family protein K03547 sbcD; DNA repair protein SbcD/Mre11 D CPF_2743 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D CPF_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CPF_1984 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CPF_2271 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CPF_0054 recR; recombination protein RecR K06187 recR; recombination protein RecR D CPF_2069 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CPF_0025 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D CPF_0024 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D CPF_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CPF_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CPF_1956 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CPF_2802 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CPF_0939 RecT family protein K07455 recT; recombination protein RecT D CPF_0327 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_1542 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CPF_1818 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CPF_1364 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CPF_2178 recX; regulatory protein RecX K03565 recX; regulatory protein D CPF_2671 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CPF_2670 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CPF_1938 DHH subfamily 1 protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:cpf03029] D CPF_1940 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CPF_2146 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CPF_1953 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CPF_2716 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2730 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2717 fusA; translation elongation factor G K02355 fusA; elongation factor G D CPF_0074 fusA; translation elongation factor G K02355 fusA; elongation factor G D CPF_2359 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D CPF_2272 era; GTP-binding protein Era K03595 era; GTPase D CPF_0633 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CPF_0657 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CPF_2188 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CPF_2779 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CPF_1915 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CPF_2977 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1595 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_1921 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CPF_0283 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CPF_2290 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CPF_0241 dnaK family protein K04043 dnaK; molecular chaperone DnaK D CPF_2291 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CPF_2573 groL; chaperonin, GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CPF_2574 groS; chaperonin, 10 kDa K04078 groES; chaperonin GroES D CPF_2289 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CPF_1667 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2039 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2994 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:cpf02000] D CPF_1777 ABC transporter, permease/ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_1776 ABC transporter, permease/ATP-binding protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0366 ABC transporter, permease/ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0506 ABC transporter, permease/ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0367 ABC transporter, permease/ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_0507 ABC transporter, permease/ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CPF_2580 ABC transporter, ATP-binding protein/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CPF_0217 ABC transporter, permease/ATP-binding protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D CPF_2868 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D CPF_2342 modA; molybdate ABC transporter, molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CPF_2341 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CPF_0440 bacterial extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CPF_0223 putative iron compound ABC transporter, iron compound-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CPF_0441 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D CPF_0442 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CPF_2226 potD; spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CPF_2225 potC; spermidine/putrescine ABC transporter, permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein D CPF_2224 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein D CPF_2223 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CPF_1477 ABC transporter, substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D CPF_1479 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D CPF_1480 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D CPF_1478 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D CPF_0538 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CPF_0537 glycine betaine/L-proline transport, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CPF_1738 conserved hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CPF_1737 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D CPF_1736 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CPF_2654 ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CPF_2652 putative maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D CPF_2651 putative maltose/maltodextrin ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D CPF_2650 putative maltose/maltodextrin ABC transporter, permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D CPF_1113 sugar ABC transporter, sugar-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein D CPF_1114 sugar ABC transporter, permease protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein D CPF_1115 sugar ABC transporter, permease protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein D CPF_0556 ABC transporter, solute-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein D CPF_0557 ABC transporter, permease protein K10201 ngcF; N-acetylglucosamine transport system permease protein D CPF_0558 ABC transporter, permease protein K10202 ngcG; N-acetylglucosamine transport system permease protein D CPF_1285 conserved hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_2335 bacterial extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1283 conserved hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1466 putative lipoprotein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_1077 bacterial extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein D CPF_2339 ABC transporter, permease protein K17319 lplB; putative aldouronate transport system permease protein D CPF_2338 ABC transporter, permease protein K17320 lplC; putative aldouronate transport system permease protein D CPF_1548 putative galactoside ABC transporter, galactoside-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D CPF_1550 mglC; galactoside ABC transporter, permease protein K10541 mglC; methyl-galactoside transport system permease protein D CPF_1549 mglA; galactoside ABC transporter, ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D CPF_1881 rbsC; ribose ABC transporter, permease protein K10440 rbsC; ribose transport system permease protein D CPF_1882 rbsA; ribose ABC transporter, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CPF_1832 lipoprotein, BMP family K07335 bmpA; basic membrane protein A and related proteins D CPF_1516 lipoprotein, BMP family K07335 bmpA; basic membrane protein A and related proteins D CPF_1830 ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D CPF_1829 ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CPF_1831 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CPF_0617 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_0618 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CPF_0619 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CPF_0620 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CPF_0621 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CPF_0581 amino acid ABC transporter, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D CPF_0582 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein D CPF_0583 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D CPF_2350 amino acid ABC transporter, amino acid-binding protein/permease protein, His/Glu/Gln/Arg/opine family K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CPF_2349 amino acid ABC transporter, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein D CPF_1531 amino acid ABC transporter, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CPF_1532 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D CPF_1533 amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D CPF_2538 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CPF_2555 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CPF_2554 oligopeptide/dipeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CPF_2553 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CPF_2552 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CPF_2551 oligopeptide/dipeptide ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CPF_0807 iron compound ABC transporter, iron compound-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein D CPF_0808 putative ferrichrome ABC transporter, permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein D CPF_0809 putative ferrichrome ABC transporter, permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein D CPF_0810 putative ferrichrome ABC transporter, ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D CPF_0213 putative iron chelate uptake ABC transporter, solute-binding protein K25113 htsA; heme transport system substrate-binding protein D CPF_0214 iron chelate uptake ABC transporter, FeCT family, permease protein K25114 htsB; heme transport system permease protein D CPF_0215 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25115 htsC; heme transport system ATP-binding protein [EC:7.6.2.5] D CPF_1426 iron(III) ABC transporter, iron(III)-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CPF_1425 iron(III) ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D CPF_1424 iron(III) ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D CPF_1296 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D CPF_1297 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein D CPF_1298 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D CPF_2413 ABC transporter, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CPF_1710 putative zinc ABC transporter, permease protein K09816 znuB; zinc transport system permease protein D CPF_1709 putative zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CPF_0186 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D CPF_0187 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CPF_0185 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CPF_0188 cbiO; cobalt ABC transporter, ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D CPF_2259 putative membrane protein K16923 qrtT; energy-coupling factor transport system substrate-specific component D CPF_1836 putative membrane protein K16924 mtsT; energy-coupling factor transport system substrate-specific component D CPF_1834 putative cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CPF_2681 cobalt ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CPF_2683 cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CPF_2682 cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CPF_1835 ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CPF_0263 ABC-2 type transporter, permease protein K09692 tagG; teichoic acid transport system permease protein D CPF_0264 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D CPF_0267 ABC transporter, ATP-binding protein K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4] D CPF_0297 putative cell division protein K09811 ftsX; cell division transport system permease protein D CPF_0296 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CPF_0173 conserved hypothetical protein K25154 evrC; viologen exporter family transport system permease protein D CPF_0174 putative ABC transporter, permease protein K25155 evrB; viologen exporter family transport system permease protein D CPF_0175 ABC transporter, ATP-binding protein K25156 evrA; viologen exporter family transport system ATP-binding protein D CPF_0704 putative lipoprotein K01992 ABC-2.P; ABC-2 type transport system permease protein D CPF_0303 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CPF_1194 putative bacitracin ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CPF_0447 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CPF_0446 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_0703 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_2288 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_0302 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_0878 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_1193 bacitracin ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_1094 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CPF_0119 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CPF_0746 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CPF_1201 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein D CPF_1791 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CPF_1199 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CPF_0745 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CPF_0118 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CPF_1792 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CPF_0841 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CPF_1081 MATE efflux family protein K18908 mepA; MATE family, multidrug efflux pump D CPF_1711 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CPF_0835 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CPF_1409 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_2828 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_1735 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_1483 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_0857 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_2859 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_0330 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CPF_1052 fucP; L-fucose:H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D CPF_0222 putative glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D CPF_2556 major facilitator family transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CPF_1028 multidrug resistance protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D CPF_1490 putative tetracycline resistance protein K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter D CPF_0425 major facilitator family protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein D CPF_2666 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CPF_1923 phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr D CPF_0070 putative PTS system, N-acetylglucosamine-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CPF_2412 ptsG; PTS system, glucose-specific IIBC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CPF_0071 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_1070 PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CPF_0422 PTS system, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CPF_1785 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CPF_0541 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CPF_0564 fruA; PTS system, fructose-specific, IIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CPF_2902 PTS system, lactose/cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CPF_2493 PTS system, lactose/cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CPF_2968 PTS system, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_0818 PTS system, mannose/fructose/sorbose family, IIB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CPF_1717 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_2965 PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D CPF_0819 PTS system, mannose/fructose/sorbose family, IIC component K02795 manY; mannose PTS system EIIC component D CPF_1715 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_2967 PTS system, IIC component K02795 manY; mannose PTS system EIIC component D CPF_0820 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component D CPF_1714 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_2966 PTS system, IID component K02796 manZ; mannose PTS system EIID component D CPF_1716 PTS system, IIB component K19507 gfrB; fructoselysine/glucoselysine PTS system EIIB component [EC:2.7.1.-] D CPF_0404 PTS system, mannose/fructose/sorbose family, IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CPF_0401 PTS system, mannose/fructose/sorbose family, IIB component K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CPF_0402 PTS system, mannose/fructose/sorbose family, IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CPF_0403 PTS system, mannose/fructose/sorbose family, IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component D CPF_0501 PTS system, L-Ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0644 putative PTS system, ascorbate-specific IIA component SgaA K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CPF_0646 putative PTS system, ascorbate-specific IIB component SgaB K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0502 PTS system, lactose/cellobiose-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CPF_0645 putative PTS system, ascorbate-specific IIC component SgaT K03475 ulaA; ascorbate PTS system EIIC component D CPF_0503 PTS system, L-Ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CPF_2878 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D CPF_1170 putative glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D CPF_0089 formate/nitrite transporter family protein K02598 nirC; nitrite transporter D CPF_1695 fnt; formate/nitrite transporter K02598 nirC; nitrite transporter D CPF_0167 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D CPF_0204 mechanosensitive ion channel family protein K03442 mscS; small conductance mechanosensitive channel D CPF_2980 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D CPF_0253 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein D CPF_1450 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D CPF_2767 putative cation transporter K03284 corA; magnesium transporter D CPF_1262 putative cation transporter K03284 corA; magnesium transporter D CPF_1284 crcB; crcB protein K06199 crcB; fluoride exporter D CPF_0439 CBS/transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CPF_0036 putative transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CPF_0969 KID repeat family protein K21449 ata; trimeric autotransporter adhesin D CPF_2235 lrgA family protein K06518 cidA; holin-like protein D CPF_0896 eutM; ethanolamine utilization protein EutM K04027 eutM; ethanolamine utilization protein EutM D CPF_1369 putative lysine-specific permease K11733 lysP; lysine-specific permease D CPF_0377 putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D CPF_0163 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D CPF_2317 glutamate:gamma aminobutyrate antiporter family protein K20265 gadC; glutamate:GABA antiporter D CPF_1507 glutamate:gamma-aminobutyrate antiporter family protein K20265 gadC; glutamate:GABA antiporter D CPF_0717 zip family transporter K07238 TC.ZIP; zinc transporter, ZIP family D CPF_2936 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CPF_0853 putative permease protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family D CPF_0307 lctP; L-lactate permease K03303 lutP; lactate permease D CPF_1624 cax; calcium/proton exchanger K07300 chaA; Ca2+:H+ antiporter D CPF_1817 cax; calcium/proton exchanger K07301 yrbG; cation:H+ antiporter D CPF_0756 proton/sodium-glutamate symporter K11102 gltP; proton glutamate symport protein D CPF_2920 transporter, monovalent cation:proton antiporter-2 (CPA2) family K11105 cvrA; potassium/hydrogen antiporter D CPF_0227 transporter, monovalent cation:proton antiporter-2 (CPA2) family K26730 napA; Na+:H+ antiporter D CPF_2143 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D CPF_2142 putative potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D CPF_1756 putative uracil permease K02824 uraA; uracil permease D CPF_1422 uracil-xanthine permease K02824 uraA; uracil permease D CPF_2907 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CPF_2004 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CPF_1827 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CPF_1492 nucleoside transporter, NupC family K11535 nupC; nucleoside transport protein D CPF_2173 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D CPF_1662 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D CPF_0661 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D CPF_0570 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D CPF_2508 chromate transport protein K07240 chrA; chromate transporter D CPF_2509 chromate transport protein K07240 chrA; chromate transporter D CPF_1731 sulfate permease, SulP family K03321 TC.SULP; sulfate permease, SulP family D CPF_2677 Na/Pi-cotransporter family protein/PhoU family protein K03324 yjbB; phosphate:Na+ symporter D CPF_2804 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D CPF_1413 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D CPF_1900 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D CPF_0509 transporter, auxin efflux carrier family K24180 mleP; malate permease and related proteins D CPF_1235 potassium transporter K03549 kup; KUP system potassium uptake protein D CPF_2425 putative membrane protein K23675 fmnP; riboflavin transporter D CPF_2869 putative membrane protein K16789 thiT; thiamine transporter D CPF_1622 probable proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D CPF_2113 spoVE; stage V sporulation protein E K03588 ftsW; cell division protein FtsW D CPF_0516 putative membrane protein K23242 mntP; manganese efflux pump family protein D CPF_0739 putative cytochrome C-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D CPF_2861 membrane protein K06196 ccdA; cytochrome c-type biogenesis protein D CPF_0465 capsular polysaccharide biosynthesis protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CPF_0464 capsule chain length determinant protein K19420 epsA; protein tyrosine kinase modulator D CPF_0387 putative nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D CPF_1010 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CPF_1912 putative ferrous iron transport protein K04758 feoA; ferrous iron transport protein A D CPF_1126 feoA family protein K04758 feoA; ferrous iron transport protein A D CPF_1127 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CPF_1913 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CPF_1125 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CPF_1009 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CPF_2240 TspO/MBR family protein K05770 TSPO; translocator protein D CPF_0572 MgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D CPF_1155 MgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:cpf02044] D CPF_2571 Type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CPF_2568 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2567 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2566 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2572 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2570 secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D CPF_2569 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D CPF_2565 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D CPF_2564 type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D CPF_2563 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D CPF_2020 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D CPF_2375 putative comE operon protein 1 K02237 comEA; competence protein ComEA D CPF_1322 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CPF_2301 competence family protein K02238 comEC; competence protein ComEC D CPF_1750 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC D CPF_1910 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC D CPF_1849 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC D CPF_2431 comF protein, homolog K02242 comFC; competence protein ComFC D CPF_2429 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CPF_2197 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CPF_2728 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CPF_2196 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CPF_1503 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CPF_2694 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CPF_1967 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CPF_1969 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CPF_2964 putative preprotein translocase subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2200 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_0405 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CPF_2994 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:cpf02042] D CPF_0126 C4-dicarboxylate transporter family protein K11041 eta; exfoliative toxin A/B D CPF_0156 pfo; perfringolysin O K11031 slo; thiol-activated cytolysin D CPF_0439 CBS/transporter associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CPF_0036 putative transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family D CPF_1725 hemolysin III K11068 hlyIII; hemolysin III D CPF_2171 hlyIII; hemolysin III K11068 hlyIII; hemolysin III D CPF_0042 plc; phospholipase C K16619 plc; phospholipase C / alpha-toxin [EC:3.1.4.3] D CPF_0184 nagH; hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_0875 putative O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1487 putative hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1442 nagJ; O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_0166 colA; microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D CPF_0840 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8] D CPF_1467 putative enterotoxin, EntA K11059 entA; probable enterotoxin A D CPF_1562 SH3 domain/NlpC/P60 family protein K11060 entB; probable enterotoxin B D CPF_0454 putative enterotoxin EntC K11061 entC; probable enterotoxin C D CPF_0587 putative enterotoxin, EntD K11062 entD; probable enterotoxin D C 02022 Two-component system [BR:cpf02022] D CPF_2010 sensory box histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CPF_0623 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CPF_2504 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CPF_1213 kdpD; sensor histidine kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CPF_1214 kdpE; DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CPF_2811 DNA-binding response regulator K07775 resD; two-component system, OmpR family, response regulator ResD D CPF_1140 sensor histidine kinase K14982 ciaH; two-component system, OmpR family, sensor histidine kinase CiaH [EC:2.7.13.3] D CPF_1139 DNA-binding response regulator K14983 ciaR; two-component system, OmpR family, response regulator CiaR D CPF_2181 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CPF_1057 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CPF_1056 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D CPF_2067 spo0A; Spo0A protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D CPF_0512 response regulator K02475 K02475; two-component system, CitB family, response regulator D CPF_0863 putative sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CPF_0554 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_2345 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_1112 sensor histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3] D CPF_2344 DNA-binding response regulator, AraC family K07720 yesN; two-component system, response regulator YesN D CPF_1111 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D CPF_0889 sensor histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D CPF_0888 response regulator K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:cpf02035] D CPF_0986 fliB domain protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D CPF_0797 FliB family protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D CPF_1481 conserved hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D CPF_1156 lysine-N-methylase, homolog K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D CPF_2020 pilT; twitching motility protein PilT K02669 pilT; twitching motility protein PilT D CPF_2568 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2567 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2566 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2572 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA D CPF_2570 secretion system protein E K02652 pilB; type IV pilus assembly protein PilB D CPF_2569 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D CPF_2571 Type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CPF_2563 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D CPF_2564 type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN D CPF_2565 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:cpf04812] D CPF_2398 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2445 mbl; mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2018 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CPF_2019 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CPF_2394 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CPF_2393 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CPF_2392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CPF_2988 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D CPF_2987 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:cpf04147] D CPF_0417 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CPF_1497 ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D CPF_1505 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CPF_1511 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CPF_1510 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CPF_1281 pyruvate kinase barrel domain protein K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2404 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_0351 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CPF_2183 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CPF_2573 groL; chaperonin, GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CPF_2290 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CPF_0241 dnaK family protein K04043 dnaK; molecular chaperone DnaK D CPF_2549 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CPF_2558 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CPF_2716 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2730 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CPF_2281 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CPF_0098 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CPF_2460 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CPF_2693 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CPF_2194 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CPF_0682 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CPF_0683 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CPF_2130 calx-beta domain protein K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51] D CPF_1552 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CPF_1840 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CPF_2876 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CPF_2894 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CPF_1686 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CPF_0061 putative D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CPF_0677 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CPF_2582 electron transfer flavoprotein, alpha subunit/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D CPF_1509 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:cpf02048] D CPF_2596 hsdR; type I restriction-modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D CPF_2598 hsdS; type I restriction-modification enzyme, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D CPF_2599 hsdM; type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D CPF_1606 putative adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CPF_1017 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_1018 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0139 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CPF_0362 type III restriction-modification system, Res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D CPF_0361 type III restriction-modification system, Mod subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CPF_0992 McrB domain protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D CPF_0993 conserved hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D CPF_0291 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D CPF_2018 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CPF_2398 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2445 mbl; mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CPF_2325 DNA gyrase/topoisomerase IV, A subunit family protein K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CPF_2326 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CPF_1255 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CPF_1667 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CPF_2039 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:cpf04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:cpf04090] C 01504 Antimicrobial resistance genes [BR:cpf01504] D CPF_0869 acetyltransferase, GNAT family K18815 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82] D CPF_1028 multidrug resistance protein K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D CPF_1490 putative tetracycline resistance protein K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter D CPF_1233 putative tetracycline resistance protein K18220 tetM; ribosomal protection tetracycline resistance protein D CPF_1388 putative beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CPF_2181 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CPF_1631 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CPF_1456 putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D CPF_1082 transcriptional regulator, MarR family K18909 mepR; MarR family transcriptional regulator, repressor for mepA D CPF_1081 MATE efflux family protein K18908 mepA; MATE family, multidrug efflux pump C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:cpf00536] D CPF_0184 nagH; hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_0875 putative O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1487 putative hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1442 nagJ; O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cpf00537] D CPF_2183 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CPF_0184 nagH; hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_0875 putative O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1487 putative hyaluronoglucosaminidase K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] D CPF_1442 nagJ; O-GlcNAcase nagJ K01197 hya; hyaluronoglucosaminidase [EC:3.2.1.35] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:cpf03100] D CPF_0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2507 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2773 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CPF_2520 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2531 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2523 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2622 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_2513 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CPF_0073 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2505 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2780 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2771 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CPF_2942 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2948 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2945 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CPF_2153 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CPF_2769 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CPF_2518 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_2529 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_2621 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CPF_0573 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2944 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2947 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2950 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CPF_2515 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2525 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2628 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2155 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2521 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2629 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2154 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2524 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2514 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2532 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2627 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2620 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_0944 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CPF_2519 tRNA-His K14226 tRNA-His; tRNA His D CPF_2530 tRNA-His K14226 tRNA-His; tRNA His D CPF_2506 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CPF_2772 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CPF_0679 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2796 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2793 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2516 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2526 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2630 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_1633 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2246 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CPF_2619 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2626 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_0068 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2517 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2527 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_2528 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CPF_0008 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0229 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0489 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2792 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2795 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2791 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_2794 tRNA-Met K14230 tRNA-Met; tRNA Met D CPF_0193 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_2156 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_2770 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_0260 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CPF_0272 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_2533 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_2522 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CPF_0016 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0019 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0020 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_0048 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CPF_2437 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2442 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2941 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2439 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_2731 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CPF_0946 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2420 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2419 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CPF_2436 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2441 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2438 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CPF_2440 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2943 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2946 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2949 tRNA-Val K14237 tRNA-Val; tRNA Val D CPF_2120 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CPF_2998 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3010 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3004 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3013 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3007 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3001 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3021 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_3018 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CPF_2999 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3011 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3008 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3002 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3005 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3014 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3017 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3020 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CPF_3000 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3019 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3015 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3012 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3009 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3003 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3006 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CPF_3016 ssrA; 10Sa RNA (tmRNA) K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CPF_0510 putative D-lactate dehydrogenase K25634 hgdH; 2-oxoglutarate reductase [EC:1.1.1.399] D CPF_0850 NADH-dependent butanol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-] D CPF_1269 rubredoxin/flavodoxin/oxidoreductase K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D CPF_0284 metallo-beta-lactamase family protein K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D CPF_0535 flavodoxin family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D CPF_0793 flavodoxin family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D CPF_2913 msrA; methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CPF_1860 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CPF_0261 antioxidant, AhpC/TSA family K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CPF_0784 ahpC; alkyl hydroperoxide reductase, C subunit K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D CPF_2655 hydA; iron hydrogenase K00532 E1.12.7.2; ferredoxin hydrogenase [EC:1.12.7.2] D CPF_0792 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CPF_0780 oxidoreductase, FAD-binding K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D CPF_1236 ferritin family protein K02217 ftnA; ferritin [EC:1.16.3.2] D CPF_1464 oxidoreductase, NAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D CPF_0834 arsC; arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CPF_2826 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D CPF_0641 4Fe-4S binding domain protein/radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CPF_1357 pflA; pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CPF_1251 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CPF_1307 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CPF_2102 putative methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D CPF_0251 lacA; galactoside O-acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18] D CPF_2912 maa; maltose transacetylase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D CPF_0724 acetyltransferase, GNAT family K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D CPF_0553 conserved hypothetical protein TIGR02336 K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211] D CPF_0047 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CPF_2837 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CPF_1178 putative ATP:cob(I)alamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-] D CPF_2363 putative thiamin biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CPF_2491 ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CPF_1985 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D CPF_2660 conserved hypothetical protein TIGR00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D CPF_0041 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D CPF_0561 CDP-alcohol phosphatidyltransferase family protein K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D CPF_2306 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D CPF_1261 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D CPF_2752 ATP:guanido phosphotransferase domain protein K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D CPF_1423 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CPF_2789 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D CPF_2208 conserved hypothetical protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D CPF_0243 putative protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D CPF_1270 conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D CPF_2973 DHH family protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D CPF_2276 putative hydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D CPF_1101 sulfatase family protein K01133 betC; choline-sulfatase [EC:3.1.6.6] D CPF_2843 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CPF_2841 primase homolog K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D CPF_0685 Fibronectin type III domain protein K17624 engCP; endo-alpha-N-acetylgalactosaminidase [EC:3.2.1.97] D CPF_0400 putative glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180] D CPF_1301 glycosyl hydrolase, family 31/fibronectin type III domain protein K25767 nag31; exo-acting protein-alpha-N-acetylgalactosaminidase [EC:3.2.1.217] D CPF_0545 putative N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CPF_1885 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CPF_1997 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CPF_0754 def; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CPF_2167 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D CPF_1728 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D CPF_0823 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D CPF_2122 pdaA; delta-lactam-biosynthetic de-N-acetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D CPF_1267 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CPF_2329 uvdE; UV damage endonuclease UvdE K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-] D CPF_0720 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D CPF_0365 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53] D CPF_0288 carbohydrate kinase family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D CPF_0394 polysaccharide lyase, family 8 K01727 hysA; hyaluronate lyase [EC:4.2.2.1] D CPF_1050 fucU; fucose operon protein FucU K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D CPF_2477 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D CPF_1664 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D CPF_1663 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D CPF_1321 rnfB; electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D CPF_1412 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CPF_2311 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CPF_0317 cation-transporting ATPase, P-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CPF_2587 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D CPF_1153 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D CPF_0574 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D CPF_2421 CBS domain protein K04767 acuB; acetoin utilization protein AcuB D CPF_1176 dhaF; glycerol dehydratase reactivation factor, large subunit K27264 pduG; propanediol dehydratase-reactivating factor large subunit D CPF_1177 dhaG; glycerol dehydratase reactivation factor, small subunit K27265 pduH; propanediol dehydratase-reactivating factor small subunit C 99982 Energy metabolism D CPF_2834 putative ferredoxin K05337 fer; ferredoxin D CPF_1318 rnfG; electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D CPF_1319 rnfE; electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D CPF_1320 rnfA; electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D CPF_2038 nifU; FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D CPF_2583 electron transfer flavoprotein, beta subunit/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit D CPF_1145 pyridine nucleotide-disulphide oxidoreductase family protein K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase C 99983 Lipid metabolism D CPF_0301 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D CPF_1517 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D CPF_2832 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D CPF_0902 ethanolamine utilization protein EutH K04023 eutH; ethanolamine transporter D CPF_2492 putative ethanolamine utilization protein EutH K04023 eutH; ethanolamine transporter D CPF_0893 eutL; ethanolamine utilization protein EutL K04026 eutL; ethanolamine utilization protein EutL D CPF_0887 eutP; ethanolamine utilization protein, EutP K04029 eutP; ethanolamine utilization protein EutP D CPF_0903 ethanolamine utilization protein EutQ K04030 eutQ; ethanolamine utilization protein EutQ D CPF_0886 eutS; ethanolamine utilization protein EutS K04031 eutS; ethanolamine utilization protein EutS D CPF_0453 glyoxalase family protein K08234 yaeR; glyoxylase I family protein D CPF_2108 conserved hypothetical protein TIGR00044 K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D CPF_2662 putative spore-cortex-lytic enzyme K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D CPF_2852 ABC1 domain protein K03688 ubiB; ubiquinone biosynthesis protein D CPF_2049 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D CPF_1452 cold shock protein K03704 cspA; cold shock protein D CPF_2426 RNA-binding protein K06959 tex; protein Tex D CPF_2002 conserved hypothetical protein K09777 remA; extracellular matrix regulatory protein A D CPF_0005 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D CPF_2797 RNA-binding protein K07571 K07571; S1 RNA binding domain protein C 99975 Protein processing D CPF_2753 conserved hypothetical protein K19411 mcsA; protein arginine kinase activator D CPF_1648 tig; trigger factor K03545 tig; trigger factor D CPF_1501 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D CPF_1958 Mg chelatase homolog K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D CPF_1703 putative ribonuclease HI K06993 K06993; ribonuclease H-related protein D CPF_2399 DNA repair protein, RadC family K03630 radC; DNA repair protein RadC D CPF_1959 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease D CPF_1697 GIY-YIG domain protein K07461 K07461; putative endonuclease D CPF_1957 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D CPF_0948 phage terminase, small subunit K07474 xtmA; phage terminase small subunit D CPF_0949 putative phage terminase, large subunit K06909 xtmB; phage terminase large subunit D CPF_0871 transposase, IS605 OrfB family K07496 K07496; putative transposase D CPF_1629 transposase, IS605 OrfB family K07496 K07496; putative transposase D CPF_1008 transposase, IS605 OrfB family K07496 K07496; putative transposase C 99979 Viral proteins C 99998 Others D CPF_1822 pspA; phage shock protein A K03969 pspA; phage shock protein A D CPF_0250 conserved hypothetical protein K07504 K07504; predicted type IV restriction endonuclease D CPF_0053 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CPF_0321 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D CPF_0523 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CPF_0563 phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family D CPF_0179 sodium/solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D CPF_0087 sodium/solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D CPF_1621 sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D CPF_1672 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CPF_2219 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CPF_0392 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CPF_0613 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CPF_0050 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CPF_2819 nucleoside transporter, NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D CPF_0777 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D CPF_0056 bofA; sigma-K factor processing regulatory protein BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D CPF_1067 cotJB; spore coat protein CotJB K06333 cotJB; spore coat protein JB D CPF_1068 cotJC; spore coat protein CotJC K06334 cotJC; spore coat protein JC D CPF_2993 R3H domain protein K06346 jag; spoIIIJ-associated protein D CPF_2857 spore maturation protein A K06373 spmA; spore maturation protein A D CPF_2856 spore maturation protein B K06374 spmB; spore maturation protein B D CPF_2307 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D CPF_2064 spoIIM; stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M D CPF_2297 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P D CPF_2475 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D CPF_2087 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D CPF_2086 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D CPF_2085 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D CPF_2084 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D CPF_2083 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D CPF_2082 spoIIIAF; stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D CPF_2081 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D CPF_2080 spoIIIAH; stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH D CPF_2006 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D CPF_2606 site-specific recombinase, resolvase family K06400 spoIVCA; site-specific DNA recombinase D CPF_0138 site-specific recombinase, resolvase family K06400 spoIVCA; site-specific DNA recombinase D CPF_1608 putative resolvase K06400 spoIVCA; site-specific DNA recombinase D CPF_2603 putative resolvase K06400 spoIVCA; site-specific DNA recombinase D CPF_2604 site-specific recombinase, resolvase family K06400 spoIVCA; site-specific DNA recombinase D CPF_2304 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D CPF_2303 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD D CPF_2302 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D CPF_1241 spoVAF; spore germination protein AF K06408 spoVAF; stage V sporulation protein AF D CPF_2814 stage V sporulation protein G K06412 spoVG; stage V sporulation protein G D CPF_1539 spoVR; stage V sporulation protein R K06415 spoVR; stage V sporulation protein R D CPF_1925 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D CPF_1676 small, acid-soluble spore protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D CPF_2321 sspC1; small, acid-soluble spore protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D CPF_2417 small, acid-soluble spore protein 1 K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D CPF_2481 peptidase family protein K06436 yabG; spore coat assemly protein D CPF_2277 putative stage IV sporulation protein K06438 yqfD; similar to stage IV sporulation protein C 99993 Cell motility C 99995 Signaling proteins D CPF_2027 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein D CPF_1747 ACT domain protein K07166 K07166; ACT domain-containing protein D CPF_1919 PhoH family protein K07175 phoH2; PhoH-like ATPase D CPF_1541 prkA; serine protein kinase K07180 prkA; serine protein kinase C 99992 Structural proteins D CPF_0369 glycosyl hydrolase, family 25 K07273 acm; lysozyme D CPF_1568 glycosyl hydrolase, family 25 K07273 acm; lysozyme D CPF_0973 glycosyl hydrolase, family 25 K07273 acm; lysozyme D CPF_1793 conserved hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein D CPF_0418 conserved hypothetical protein K21463 tcaA; membrane-associated protein TcaA C 99994 Others D CPF_0622 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D CPF_0444 BFD-like iron-sulfur cluster-binding protein K02192 bfd; bacterioferritin-associated ferredoxin D CPF_0254 CutC family protein K06201 cutC; copper homeostasis protein D CPF_0994 putative membrane protein K26996 sdpI; immunity protein, SdpI family D CPF_1100 conserved hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D CPF_0591 membrane protein, MmpL family K06994 K06994; putative drug exporter of the RND superfamily D CPF_1826 phospholipase, patatin family K07001 K07001; NTE family protein D CPF_1203 putative metal-dependent hydrolase, membrane-bound K07038 K07038; inner membrane protein D CPF_0281 YihY family protein K07058 K07058; membrane protein D CPF_1159 dedA; dedA protein K03975 dedA; membrane-associated protein D CPF_2915 putative phage infection protein K01421 yhgE; putative membrane protein D CPF_2916 putative phage infection protein K01421 yhgE; putative membrane protein D CPF_0335 putative membrane protein K08972 K08972; putative membrane protein D CPF_1628 putative membrane protein K08974 K08974; putative membrane protein D CPF_1761 putative membrane protein K08981 K08981; putative membrane protein D CPF_2917 phnA family protein K06193 phnA; protein PhnA C 99997 Function unknown D CPF_2198 radical SAM domain protein K06871 K06871; uncharacterized protein D CPF_0616 AnSME; anaerobic sulfatase-maturating enzyme K06871 K06871; uncharacterized protein D CPF_2612 conserved hypothetical protein K06889 K06889; uncharacterized protein D CPF_1158 conserved hypothetical protein K06889 K06889; uncharacterized protein D CPF_1828 conserved hypothetical protein K06929 K06929; uncharacterized protein D CPF_1275 HDIG domain protein K06950 K06950; uncharacterized protein D CPF_1191 sodium:dicarboxylate symporter family K06956 K06956; uncharacterized protein D CPF_1965 conserved hypothetical protein K06960 K06960; uncharacterized protein D CPF_2733 conserved hypothetical protein K06962 K06962; uncharacterized protein D CPF_1995 putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein D CPF_0787 putative membrane protein K07035 K07035; uncharacterized protein D CPF_0045 putative permease K07089 K07089; uncharacterized protein D CPF_1742 putative membrane protein K07090 K07090; uncharacterized protein D CPF_2534 Ser/Thr protein phosphatase family protein K07095 K07095; uncharacterized protein D CPF_0379 Ser/Thr protein phosphatase family protein K07098 K07098; uncharacterized protein D CPF_0634 Ser/Thr protein phosphatase family protein K07099 K07099; uncharacterized protein D CPF_0729 YeeE/YedE family protein K07112 K07112; uncharacterized protein D CPF_2906 oxidoreductase, short-chain dehydrogenase/reductase family K07124 K07124; uncharacterized protein D CPF_2658 conserved hypothetical protein K07137 K07137; uncharacterized protein D CPF_2882 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein D CPF_1372 putative membrane protein K07149 K07149; uncharacterized protein D CPF_2995 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein D CPF_0093 conserved hypothetical protein K09004 K09004; uncharacterized protein D CPF_2279 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D CPF_0011 putative membrane protein K09118 K09118; uncharacterized protein D CPF_1282 conserved hypothetical protein K09137 K09137; uncharacterized protein D CPF_0776 conserved hypothetical protein K09155 K09155; uncharacterized protein D CPF_1748 conserved hypothetical protein K09157 K09157; uncharacterized protein D CPF_0831 conserved hypothetical protein K09167 K09167; uncharacterized protein D CPF_1762 putative membrane protein K09167 K09167; uncharacterized protein D CPF_0428 conserved hypothetical protein K09704 K09704; uncharacterized protein D CPF_2172 conserved hypothetical protein K09705 K09705; uncharacterized protein D CPF_2358 conserved hypothetical protein K09764 K09764; uncharacterized protein D CPF_2548 YaiI/YqxD family protein K09768 K09768; uncharacterized protein D CPF_1907 conserved hypothetical protein K09779 K09779; uncharacterized protein D CPF_1540 yhbH; sporulation protein YhbH K09786 K09786; uncharacterized protein D CPF_1968 DNA-binding protein K09787 K09787; uncharacterized protein D CPF_0218 conserved hypothetical protein K09790 K09790; uncharacterized protein D CPF_1902 conserved hypothetical protein K00243 K00243; uncharacterized protein D CPF_2407 conserved hypothetical protein K09861 K09861; uncharacterized protein D CPF_1396 conserved hypothetical protein K01163 K01163; uncharacterized protein D CPF_2384 conserved hypothetical protein K07584 ysxB; uncharacterized protein D CPF_0562 conserved hypothetical protein K07220 K07220; uncharacterized protein D CPF_1942 conserved hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 14, 2024