+D GENES KO
#
KEGG Orthology (KO) - Lachnoclostridium phytofermentans
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cpy00010]
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Cphy_0419 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3345 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Cphy_3683 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Cphy_2874 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Cphy_2876 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2229 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2875 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Cphy_2651 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_3303 Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_2868 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Cphy_0741 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_2900 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_0651 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_0603 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3123 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Cphy_3122 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Cphy_1232 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1117 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0556 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Cphy_2660 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_2418 Aldehyde Dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D Cphy_3853 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Cphy_2762 sugar-specific permease EIIA 1 domain K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Cphy_1768 PTS system, glucose subfamily, IIA subunit K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:cpy00020]
D Cphy_3834 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Cphy_3097 pyruvate carboxyltransferase K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D Cphy_2458 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Cphy_3096 Isocitrate dehydrogenase (NAD(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_3123 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Cphy_3122 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Cphy_0007 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Cphy_0008 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Cphy_3853 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Cphy_0603 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cpy00030]
D Cphy_0419 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Cphy_1746 3-carboxymuconate cyclase-like protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Cphy_1686 conserved hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Cphy_1703 conserved hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Cphy_1704 conserved hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D Cphy_2484 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Cphy_0014 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Cphy_0013 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Cphy_3745 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Cphy_0753 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Cphy_1818 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15]
D Cphy_3719 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_0104 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Cphy_2395 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Cphy_0054 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Cphy_2418 Aldehyde Dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D Cphy_0227 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Cphy_2739 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Cphy_2103 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Cphy_3683 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3345 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:cpy00040]
D Cphy_1301 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Cphy_3869 Fibronectin type III domain protein K22994 pelX; pectate disaccharide-lyase [EC:4.2.2.9]
D Cphy_3670 Cupin 2 conserved barrel domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D Cphy_2738 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D Cphy_3396 glycoside hydrolase family 4 K22933 lplD; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]
D Cphy_2848 glycoside hydrolase family 4 K22933 lplD; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]
D Cphy_2743 Glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D Cphy_2741 Mannitol dehydrogenase domain K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D Cphy_2740 Altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D Cphy_1061 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D Cphy_1062 Mannitol dehydrogenase domain K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D Cphy_0530 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D Cphy_1210 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Cphy_1597 Malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D Cphy_2729 Xylose isomerase domain protein TIM barrel K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Cphy_3928 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Cphy_2484 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Cphy_0584 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D Cphy_3419 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Cphy_1219 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Cphy_1146 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Cphy_3154 carbohydrate kinase FGGY K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Cphy_1179 Alcohol dehydrogenase zinc-binding domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Cphy_3155 L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D Cphy_1177 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:cpy00051]
D Cphy_2276 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_1071 glycoside hydrolase family 26 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_2128 Mannan endo-1,4-beta-mannosidase, Cellulose 1,4-beta-cellobiosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_1578 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Cphy_3377 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Cphy_0656 phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Cphy_3155 L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D Cphy_1177 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Cphy_1147 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D Cphy_1146 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Cphy_3154 carbohydrate kinase FGGY K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3345 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Cphy_3901 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D Cphy_1179 Alcohol dehydrogenase zinc-binding domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Cphy_1219 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D Cphy_3683 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Cphy_2874 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Cphy_3745 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:cpy00052]
D Cphy_0556 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Cphy_2660 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D Cphy_2237 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Cphy_1167 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Cphy_1166 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_0571 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Cphy_2025 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_3160 glycoside hydrolase family 2 sugar binding K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_2026 glycoside hydrolase family 42 domain 5 loop region K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_2888 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Cphy_0769 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D Cphy_1936 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Cphy_3056 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3345 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Cphy_2341 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Cphy_3785 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Cphy_2342 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Cphy_1934 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:cpy00053]
D Cphy_1210 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Cphy_0530 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
D Cphy_1211 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Cphy_2729 Xylose isomerase domain protein TIM barrel K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D Cphy_3928 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D Cphy_1597 Malate/L-lactate dehydrogenase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:cpy00500]
D Cphy_2341 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Cphy_3785 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D Cphy_3009 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1596 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0662 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0699 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0220 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_3329 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1937 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Cphy_2058 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_3202 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_3367 Cellulose 1,4-beta-cellobiosidase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_1163 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_0430 glycosyltransferase 36 K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D Cphy_0857 Cellobiose phosphorylase-like protein K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D Cphy_2496 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Cphy_2348 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Cphy_2304 pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41]
D Cphy_2331 pullulanase, type I K01200 pulA; pullulanase [EC:3.2.1.41]
D Cphy_2344 alpha amylase catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1]
D Cphy_2350 alpha amylase catalytic region K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D Cphy_2342 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Cphy_1934 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Cphy_2349 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Cphy_3314 Kojibiose phosphorylase K00691 mapA; maltose phosphorylase [EC:2.4.1.8]
D Cphy_1875 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Cphy_3311 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Cphy_1021 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Cphy_2762 sugar-specific permease EIIA 1 domain K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Cphy_0419 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Cphy_1578 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cpy00520]
D Cphy_1800 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Cphy_2572 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D Cphy_2332 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Cphy_1125 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Cphy_3239 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_3571 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_3854 glycosyltransferase 36 K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D Cphy_1929 glycosyltransferase 36 K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D Cphy_2762 sugar-specific permease EIIA 1 domain K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Cphy_3581 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D Cphy_3582 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Cphy_1521 glucosamine/galactosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Cphy_1578 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Cphy_3414 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Cphy_0375 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Cphy_3271 putative UDP-N-acetylglucosamine diphosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Cphy_3128 UTP--glucose-1-phosphate uridylyltransferase K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83]
D Cphy_1121 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D Cphy_1123 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Cphy_3879 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_2473 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_0330 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Cphy_3565 N-acylglucosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D Cphy_2214 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Cphy_3504 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Cphy_1169 Alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D Cphy_3398 glycoside hydrolase family 43 K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Cphy_0875 glycoside hydrolase family 43 K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Cphy_0191 glycoside hydrolase family 43 K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Cphy_3011 Alpha-N-arabinofuranosidase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Cphy_2028 glycoside hydrolase family 43 K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D Cphy_1768 PTS system, glucose subfamily, IIA subunit K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_1210 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Cphy_2237 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Cphy_1167 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D Cphy_1166 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_0571 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_2888 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Cphy_1211 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Cphy_0419 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Cphy_3377 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Cphy_0656 phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
C 00620 Pyruvate metabolism [PATH:cpy00620]
D Cphy_0603 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3123 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Cphy_3122 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_2823 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Cphy_1428 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Cphy_2642 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Cphy_1327 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Cphy_1326 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Cphy_0741 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_2900 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_0523 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Cphy_0519 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Cphy_0521 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Cphy_0522 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_1234 FAD linked oxidase domain protein K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]
D Cphy_1317 FAD linked oxidase domain protein K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]
D Cphy_1316 Electron transfer flavoprotein alpha subunit K26114 lctC; lactate dehydrogenase (NAD+,ferredoxin) subunit LctC
D Cphy_1315 Electron transfer flavoprotein alpha/beta-subunit K26115 lctB; lactate dehydrogenase (NAD+,ferredoxin) subunit LctB
D Cphy_1232 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1117 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1923 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D Cphy_2116 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Cphy_0469 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Cphy_2631 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Cphy_1663 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Cphy_1852 Glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Cphy_0549 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Cphy_0409 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Cphy_2433 Oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Cphy_1925 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2434 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_0007 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Cphy_0008 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Cphy_3853 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Cphy_0651 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Cphy_3548 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Cphy_3171 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cpy00630]
D Cphy_3834 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Cphy_2458 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Cphy_0893 Catalase K03781 katE; catalase [EC:1.11.1.6]
D Cphy_0891 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Cphy_3114 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Cphy_3263 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3274 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Cphy_1540 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Cphy_1541 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Cphy_1538 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_1539 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Cphy_2103 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Cphy_0054 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Cphy_1894 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9]
C 00640 Propanoate metabolism [PATH:cpy00640]
D Cphy_1327 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Cphy_1326 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_2823 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Cphy_0523 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Cphy_0519 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Cphy_0521 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Cphy_0522 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Cphy_1232 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1117 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_2367 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D Cphy_3100 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D Cphy_1178 Aldehyde Dehydrogenase K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:cpy00650]
D Cphy_1286 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Cphy_1428 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Cphy_2642 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Cphy_2463 iron-containing alcohol dehydrogenase K00100 bdhAB; butanol dehydrogenase [EC:1.1.1.-]
D Cphy_1925 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2434 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2435 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Cphy_2436 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Cphy_2823 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D Cphy_0603 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3123 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Cphy_3122 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Cphy_3347 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Cphy_3021 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:cpy00660]
D Cphy_3347 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Cphy_3021 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Cphy_3356 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Cphy_3355 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Cphy_3358 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D Cphy_2874 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cpy00190]
D Cphy_0089 NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Cphy_0088 NADH dehydrogenase (quinone) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Cphy_0087 hydrogenase, Fe-only K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Cphy_3738 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Cphy_3736 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Cphy_3737 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Cphy_3739 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Cphy_3735 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Cphy_3742 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Cphy_3740 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Cphy_3741 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Cphy_3442 H+transporting two-sector ATPase alpha/beta subunit central region K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Cphy_3072 H+transporting two-sector ATPase alpha/beta subunit central region K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Cphy_3441 H+transporting two-sector ATPase alpha/beta subunit central region K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Cphy_3071 H+transporting two-sector ATPase alpha/beta subunit central region K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Cphy_3447 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Cphy_3074 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Cphy_3070 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Cphy_3440 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Cphy_3075 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Cphy_3444 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Cphy_3073 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Cphy_3078 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Cphy_3077 H(+)-transporting two-sector ATPase K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Cphy_3446 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Cphy_3076 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Cphy_3445 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Cphy_2864 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:cpy00710]
D Cphy_2875 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Cphy_2876 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2229 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_3683 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Cphy_0014 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Cphy_3745 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Cphy_2874 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Cphy_2484 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Cphy_0013 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Cphy_3853 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Cphy_0651 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:cpy00720]
D Cphy_0603 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Cphy_0651 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Cphy_0007 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Cphy_0008 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Cphy_3123 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Cphy_3122 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Cphy_2458 aconitate hydratase domain protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Cphy_0523 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Cphy_0519 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Cphy_0521 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Cphy_0522 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Cphy_2752 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Cphy_2456 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Cphy_3110 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Cphy_1326 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Cphy_1327 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:cpy00680]
D Cphy_3274 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Cphy_2103 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Cphy_3683 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3345 phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Cphy_1327 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Cphy_1326 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Cphy_2651 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_3303 Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_2868 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Cphy_1465 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3382 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3383 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Cphy_2753 RimK domain protein ATP-grasp K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32]
C 00910 Nitrogen metabolism [PATH:cpy00910]
D Cphy_2847 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Cphy_2846 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Cphy_3113 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Cphy_0826 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3412 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Cphy_2934 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Cphy_3101 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Cphy_1464 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cpy00920]
D Cphy_1826 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Cphy_1827 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Cphy_1828 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Cphy_1829 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Cphy_1833 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Cphy_1832 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Cphy_2772 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Cphy_1830 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2]
D Cphy_1831 4Fe-4S ferredoxin iron-sulfur binding domain protein K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2]
D Cphy_1825 nitrite and sulphite reductase 4Fe-4S region K00385 asrC; anaerobic sulfite reductase subunit C
D Cphy_3325 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Cphy_0011 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Cphy_1228 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Cphy_2925 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cpy00061]
D Cphy_0523 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Cphy_0519 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Cphy_0521 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Cphy_0522 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Cphy_2446 acyl carrier protein K02078 acpP; acyl carrier protein
D Cphy_0516 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Cphy_0518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Cphy_0517 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3614 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3619 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_0520 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Cphy_1286 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:cpy00071]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cpy00561]
D Cphy_2103 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_1262 dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D Cphy_1263 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D Cphy_0041 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Cphy_2447 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Cphy_2389 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1893 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1941 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_3787 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_0233 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_1892 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Cphy_0635 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D Cphy_0769 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D Cphy_1936 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Cphy_3056 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:cpy00564]
D Cphy_2388 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Cphy_3205 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Cphy_3394 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Cphy_0320 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Cphy_2389 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1893 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1941 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_3787 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_0233 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_0300 glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D Cphy_3339 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Cphy_1453 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Cphy_2884 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Cphy_2647 Ethanolamine utilisation EutA K04019 eutA; ethanolamine utilization protein EutA
D Cphy_2646 Ethanolamine ammonia lyase large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D Cphy_2645 Ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D Cphy_2623 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Cphy_1960 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Cphy_1961 phosphatidylserine decarboxylase-related K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Cphy_1863 CDP-alcohol phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Cphy_2454 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D Cphy_2457 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Cphy_1331 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Cphy_3416 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
D Cphy_1608 CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
D Cphy_3390 FAD linked oxidase domain protein K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
C 00600 Sphingolipid metabolism [PATH:cpy00600]
D Cphy_0858 glycoside hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D Cphy_3404 glycoside hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D Cphy_2025 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_3160 glycoside hydrolase family 2 sugar binding K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_2026 glycoside hydrolase family 42 domain 5 loop region K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_0769 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22]
D Cphy_1936 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Cphy_3056 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D Cphy_3239 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_3571 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cpy00230]
D Cphy_2595 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Cphy_3719 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_0104 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Cphy_2395 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Cphy_0318 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Cphy_3044 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Cphy_3467 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Cphy_3468 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Cphy_3350 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Cphy_3469 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Cphy_3471 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Cphy_3045 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Cphy_3043 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Cphy_0643 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Cphy_0547 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Cphy_1981 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Cphy_1253 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Cphy_0606 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_2032 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_0752 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_2397 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Cphy_0140 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Cphy_3287 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Cphy_0369 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Cphy_3381 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D Cphy_0264 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Cphy_3915 guanylate kinase/L-type calcium channel region K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Cphy_3223 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Cphy_3222 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Cphy_0535 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Cphy_3050 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Cphy_3523 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Cphy_0261 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D Cphy_0548 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Cphy_2793 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Cphy_0020 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D Cphy_0825 adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Cphy_3037 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Cphy_1452 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D Cphy_3434 metallophosphoesterase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Cphy_3646 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Cphy_0132 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Cphy_1833 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Cphy_1832 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Cphy_0687 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Cphy_0688 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Cphy_0689 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D Cphy_3101 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:cpy00240]
D Cphy_0541 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Cphy_0540 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Cphy_2750 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Cphy_2751 aspartate transcarbamylase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Cphy_0881 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Cphy_2286 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D Cphy_2287 oxidoreductase FAD/NAD(P)-binding domain protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D Cphy_2285 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Cphy_0882 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Cphy_2626 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Cphy_0132 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Cphy_1933 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Cphy_0325 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Cphy_2450 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Cphy_3839 Cytidylate kinase-like protein K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Cphy_3519 phosphoribulokinase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Cphy_2386 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Cphy_0965 putative uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Cphy_1981 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Cphy_1253 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Cphy_3434 metallophosphoesterase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Cphy_0557 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Cphy_1452 5'-Nucleotidase domain protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D Cphy_2591 pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D Cphy_0754 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Cphy_0535 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Cphy_3050 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Cphy_3223 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Cphy_3222 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Cphy_0261 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D Cphy_0189 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Cphy_3038 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Cphy_2858 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Cphy_1496 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cpy00250]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_3413 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Cphy_3449 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Cphy_2936 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Cphy_1931 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Cphy_3006 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Cphy_3037 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Cphy_3043 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Cphy_2750 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Cphy_2751 aspartate transcarbamylase regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D Cphy_3412 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Cphy_2934 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Cphy_0826 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_0541 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Cphy_0540 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Cphy_3414 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Cphy_0318 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Cphy_3044 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cpy00260]
D Cphy_2352 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_3600 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_0426 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Cphy_3603 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Cphy_3511 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Cphy_2181 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Cphy_3274 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Cphy_2103 Hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Cphy_2651 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_3303 Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_2868 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Cphy_1465 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3382 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3383 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Cphy_1540 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Cphy_1541 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Cphy_1538 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_1539 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Cphy_1960 CDP-alcohol phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Cphy_1459 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_1460 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_3112 serine dehydratase alpha chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_2441 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Cphy_3842 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Cphy_3843 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Cphy_3172 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:cpy00270]
D Cphy_3325 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Cphy_0011 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Cphy_1228 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Cphy_1227 Cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Cphy_0455 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Cphy_3258 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Cphy_3874 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Cphy_3054 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Cphy_3729 Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Cphy_2397 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Cphy_2038 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D Cphy_2033 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Cphy_2019 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D Cphy_2924 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cphy_0889 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Cphy_2352 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_3600 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_0426 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Cphy_3603 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Cphy_2925 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D Cphy_0010 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Cphy_2760 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Cphy_0537 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_1232 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1117 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1459 L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_1460 L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_3112 serine dehydratase alpha chain K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Cphy_1465 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3382 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3383 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:cpy00280]
D Cphy_0537 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cpy00290]
D Cphy_2441 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Cphy_3356 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Cphy_3355 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Cphy_3358 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Cphy_3347 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Cphy_3021 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Cphy_3020 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Cphy_3348 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Cphy_3830 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Cphy_0537 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Cphy_3548 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D Cphy_3171 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:cpy00300]
D Cphy_3603 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Cphy_2352 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_3600 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_0426 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Cphy_3482 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Cphy_3481 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Cphy_1951 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Cphy_2337 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Cphy_0630 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Cphy_0631 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Cphy_0302 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Cphy_2659 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D Cphy_2495 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Cphy_2494 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cpy00310]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_1643 lysine 2,3-aminomutase YodO family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:cpy00220]
D Cphy_0421 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Cphy_1931 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Cphy_3006 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Cphy_0687 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Cphy_0688 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Cphy_0689 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_0541 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Cphy_0540 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Cphy_3101 Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D Cphy_0826 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_1949 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Cphy_1950 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Cphy_1948 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Cphy_1951 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:cpy00330]
D Cphy_3234 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D Cphy_0654 Hydantoinase/oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D Cphy_3766 Hydantoinase/oxoprolinase K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14]
D Cphy_3055 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Cphy_3053 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Cphy_3054 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Cphy_3051 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_3809 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D Cphy_2218 acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Cphy_3151 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Cphy_2914 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Cphy_2603 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Cphy_2600 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:cpy00340]
D Cphy_2786 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Cphy_2787 Histidine--tRNA ligase K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D Cphy_2782 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D Cphy_2783 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Cphy_2841 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Cphy_2840 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Cphy_2784 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Cphy_2094 histidinol phosphatase or PHP family hydrolase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Cphy_2903 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Cphy_2785 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Cphy_3885 flavocytochrome c K17363 urdA; urocanate reductase [EC:1.3.99.33]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:cpy00350]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:cpy00360]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Cphy_3083 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Cphy_3091 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:cpy00380]
D Cphy_1894 cyclase family protein K07130 kynB; arylformamidase [EC:3.5.1.9]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_2915 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0893 Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cpy00400]
D Cphy_2592 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Cphy_2538 phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Cphy_2358 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Cphy_2531 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Cphy_2532 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Cphy_3880 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Cphy_2540 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Cphy_3093 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Cphy_3848 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Cphy_3847 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Cphy_3846 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Cphy_3844 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Cphy_3845 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Cphy_3842 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Cphy_3843 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Cphy_3172 pyridoxal-phosphate dependent TrpB-like enzyme K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Cphy_1345 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Cphy_3604 amino acid-binding ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D Cphy_2539 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cpy00410]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_1496 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
C 00430 Taurine and hypotaurine metabolism [PATH:cpy00430]
D Cphy_1326 phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Cphy_1327 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D Cphy_3130 hypothetical protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:cpy00450]
D Cphy_1227 Cystathionine gamma-synthase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Cphy_0455 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Cphy_3258 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Cphy_1684 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Cphy_0254 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Cphy_1503 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Cphy_1495 hypothetical protein K12527 ygfK; putative selenate reductase [EC:1.97.1.9]
D Cphy_1516 molybdopterin dehydrogenase FAD-binding K12529 ygfM; putative selenate reductase FAD-binding subunit
D Cphy_1833 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Cphy_1832 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Cphy_1486 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Cphy_0025 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cpy00460]
D Cphy_3009 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1596 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0662 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0699 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0220 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_3329 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1937 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Cphy_3413 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Cphy_3449 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D Cphy_3274 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cpy00470]
D Cphy_0905 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Cphy_1644 D-alanine--D-alanine ligase domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0084 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_3791 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_3790 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Cphy_2475 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Cphy_2337 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Cphy_0630 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Cphy_0302 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:cpy00480]
D Cphy_2184 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Cphy_2796 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Cphy_2662 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Cphy_2663 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Cphy_3054 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:cpy00511]
D Cphy_2025 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_3160 glycoside hydrolase family 2 sugar binding K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_2026 glycoside hydrolase family 42 domain 5 loop region K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D Cphy_3239 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_3571 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_1720 glycoside hydrolase family 38 K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D Cphy_2190 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_3023 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_3028 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_0874 conserved hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D Cphy_1395 conserved hypothetical protein K15923 AXY8; alpha-L-fucosidase 2 [EC:3.2.1.51]
D Cphy_0858 glycoside hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D Cphy_3404 glycoside hydrolase family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cpy00541]
D Cphy_1166 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_0571 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Cphy_2888 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D Cphy_1210 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Cphy_1211 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Cphy_3681 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Cphy_3680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3305 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Cphy_3679 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Cphy_3377 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Cphy_0656 phosphomannose isomerase-like protein K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Cphy_3271 putative UDP-N-acetylglucosamine diphosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Cphy_3504 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D Cphy_3503 NAD-dependent epimerase/dehydratase K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D Cphy_3502 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D Cphy_2214 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:cpy00550]
D Cphy_3879 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_2473 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_0330 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Cphy_0107 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Cphy_2475 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Cphy_2495 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Cphy_1644 D-alanine--D-alanine ligase domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0084 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_3791 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_2494 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Cphy_2624 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Cphy_2758 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Cphy_3351 glycosyl transferase family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Cphy_3727 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Cphy_0497 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_0498 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_2372 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Cphy_2476 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Cphy_2477 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Cphy_1337 penicillin-binding protein transpeptidase K05364 pbpA; penicillin-binding protein A
D Cphy_2582 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2587 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_1197 Peptidoglycan-binding domain 1 protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2366 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_3929 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:cpy00552]
D Cphy_2758 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Cphy_0301 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Cphy_0297 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Cphy_3544 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Cphy_2336 glycosyl transferase group 1 K09809 tagF; CDP-glycerol glycerophosphotransferase [EC:2.7.8.12]
D Cphy_2795 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Cphy_3783 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Cphy_3892 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Cphy_2794 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Cphy_2557 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Cphy_1892 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Cphy_0635 sulfatase K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cpy00543]
D Cphy_0231 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Cphy_3431 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Cphy_3325 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cpy00730]
D Cphy_2907 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2302 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2179 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_0181 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2301 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Cphy_2082 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Cphy_2511 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Cphy_2485 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_1138 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_1463 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_2483 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D Cphy_3646 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:cpy00740]
D Cphy_2770 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Cphy_2595 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:cpy00750]
D Cphy_3710 Phosphomethylpyrimidine kinase type-1 K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Cphy_0990 phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D Cphy_3383 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Cphy_3511 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cpy00760]
D Cphy_2124 Aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21]
D Cphy_3836 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Cphy_0606 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_2032 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_0752 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Cphy_1981 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Cphy_1253 metallophosphoesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D Cphy_3434 metallophosphoesterase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Cphy_2546 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Cphy_0132 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Cphy_1137 NUDIX hydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D Cphy_3426 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Cphy_0012 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D Cphy_2509 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:cpy00770]
D Cphy_3347 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Cphy_3021 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Cphy_3020 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Cphy_3348 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Cphy_3830 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Cphy_0424 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Cphy_0132 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Cphy_1322 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Cphy_2802 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Cphy_0903 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Cphy_0537 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Cphy_1496 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:cpy00780]
D Cphy_0518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Cphy_0517 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3614 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3619 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_0520 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Cphy_2083 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D Cphy_2779 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:cpy00785]
D Cphy_1542 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_1540 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D Cphy_1541 Glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D Cphy_1538 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Cphy_1539 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:cpy00790]
D Cphy_2334 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Cphy_2764 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Cphy_0446 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D Cphy_1480 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Cphy_1479 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Cphy_1481 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Cphy_1519 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:cpy00670]
D Cphy_2752 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Cphy_2456 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Cphy_3274 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Cphy_3468 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Cphy_0643 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Cphy_2491 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Cphy_3177 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Cphy_1538 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Cphy_3258 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Cphy_3110 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Cphy_2601 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cpy00860]
D Cphy_1368 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Cphy_1784 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Cphy_1373 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Cphy_1789 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Cphy_1788 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Cphy_1372 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Cphy_1370 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Cphy_1786 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Cphy_1371 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Cphy_1787 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Cphy_1785 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Cphy_1369 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D Cphy_1387 anaerobic cobalt chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Cphy_1779 anaerobic cobalt chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Cphy_1375 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Cphy_1378 precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Cphy_1376 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Cphy_1377 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Cphy_1374 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Cphy_1379 precorrin-6x reductase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D Cphy_1382 Precorrin-8X methylmutase CbiC/CobH K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Cphy_1380 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Cphy_1381 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Cphy_1113 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Cphy_1112 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Cphy_1110 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Cphy_1106 conserved hypothetical protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Cphy_1108 cobalamin biosynthesis protein CobU, putative, truncation K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Cphy_1107 cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Cphy_1105 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Cphy_1109 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Cphy_1111 aminotransferase class I and II K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D Cphy_2640 cobalamin adenosyltransferase K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154]
D Cphy_0530 Beta-galactosidase K01195 uidA; beta-glucuronidase [EC:3.2.1.31]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cpy00900]
D Cphy_2511 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Cphy_2622 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Cphy_0353 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Cphy_3793 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Cphy_3326 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Cphy_2620 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Cphy_2449 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Cphy_2512 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Cphy_2624 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Cphy_0014 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cpy00523]
D Cphy_3681 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Cphy_3680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3305 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Cphy_3679 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D Cphy_3680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3305 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:cpy00946]
D Cphy_3009 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1596 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0662 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0699 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0220 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_3329 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1937 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:cpy00332]
D Cphy_2603 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Cphy_2600 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:cpy00261]
D Cphy_1833 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Cphy_1832 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Cphy_2352 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_3600 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Cphy_0426 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Cphy_3482 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Cphy_3481 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cpy00521]
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Cphy_2261 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Cphy_3681 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Cphy_3680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3305 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Cphy_3679 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Cphy_0329 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:cpy00525]
D Cphy_3681 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Cphy_3680 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Cphy_3305 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cpy00401]
D Cphy_2539 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D Cphy_3848 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Cphy_3847 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Cphy_0516 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Cphy_0517 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3614 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3619 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Cphy_2446 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:cpy00999]
D Cphy_3874 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Cphy_3009 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1596 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0662 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0699 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_0220 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_3329 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Cphy_1937 glycoside hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D Cphy_1925 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2434 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2435 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Cphy_2436 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:cpy00625]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D Cphy_3041 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_0958 Aldehyde Dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Cphy_3817 HAD-superfamily hydrolase, subfamily IA, variant 1 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D Cphy_1759 Haloacid dehalogenase domain protein hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D Cphy_3817 HAD-superfamily hydrolase, subfamily IA, variant 1 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D Cphy_1759 Haloacid dehalogenase domain protein hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D Cphy_0687 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Cphy_0688 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Cphy_0689 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:cpy00626]
D Cphy_3925 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cpy03020]
D Cphy_3687 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Cphy_3686 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Cphy_3639 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Cphy_2879 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D Cphy_0224 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cpy03010]
D Cphy_2449 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Cphy_0021 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Cphy_2680 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Cphy_3661 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Cphy_3640 RNA-binding S4 domain protein K02986 RP-S4; small subunit ribosomal protein S4
D Cphy_3650 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Cphy_3774 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Cphy_0236 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Cphy_3653 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Cphy_3627 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Cphy_3668 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Cphy_3641 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Cphy_0235 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Cphy_3642 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Cphy_3654 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Cphy_2767 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Cphy_2408 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Cphy_3658 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Cphy_3772 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Cphy_3663 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Cphy_2318 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Cphy_2616 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Cphy_3692 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Cphy_3664 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Cphy_3667 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Cphy_3666 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Cphy_3655 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Cphy_3652 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Cphy_3690 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Cphy_3757 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Cphy_3691 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Cphy_3693 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Cphy_3628 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Cphy_3657 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Cphy_3648 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Cphy_3660 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Cphy_3638 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Cphy_3651 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Cphy_2403 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Cphy_0449 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Cphy_2551 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Cphy_3662 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Cphy_3665 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Cphy_3656 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Cphy_1809 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Cphy_2549 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Cphy_2893 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Cphy_3659 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Cphy_3649 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Cphy_0411 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Cphy_1329 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Cphy_3696 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Cphy_3946 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Cphy_0448 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Cphy_3643 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Cphy_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0092 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0026 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0084 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0029 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0087 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0014 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0091 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cpy00970]
D Cphy_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0068 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0109 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0073 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Cphy_R0030 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Cphy_R0034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Cphy_R0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Cphy_R0019 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Cphy_R0098 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Cphy_R0042 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Cphy_R0031 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0059 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0060 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0078 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0075 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0105 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0041 tRNA-His K14226 tRNA-His; tRNA His
D Cphy_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Cphy_R0069 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Cphy_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0101 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0062 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0011 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0043 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0020 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0009 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Cphy_R0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0083 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0056 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0032 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0082 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0094 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Cphy_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Cphy_R0008 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Cphy_R0035 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0049 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0074 tRNA-OTHER K14237 tRNA-Val; tRNA Val
D Cphy_0221 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Cphy_0638 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Cphy_0639 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Cphy_0637 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Cphy_3294 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Cphy_0956 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_2617 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_0553 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Cphy_1139 tRNA synthetase class II (D K and N) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_0636 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_0095 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Cphy_0648 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2067 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2665 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_0748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_1115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Cphy_3324 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cphy_0025 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cphy_2491 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Cphy_3177 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Cphy_0472 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Cphy_0938 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cphy_3832 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Cphy_2574 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_3556 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_1535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_1274 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_3837 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cphy_1009 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_0552 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_3477 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Cphy_3476 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Cphy_2578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_0761 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_3480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cpy03060]
D Cphy_3647 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Cphy_3695 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Cphy_2867 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Cphy_0716 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein
D Cphy_3437 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Cphy_3943 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Cphy_0256 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Cphy_2409 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Cphy_R0106 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Cphy_2442 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Cphy_2152 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1698 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1697 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_0401 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D Cphy_0400 sec-independent translocation protein mttA/Hcf106 K03117 tatB; sec-independent protein translocase protein TatB
D Cphy_0402 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D Cphy_2402 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2284 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2877 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2878 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_1095 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_0324 peptidase A8 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Cphy_2357 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Cphy_3808 putative lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cpy04122]
D Cphy_2907 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2302 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2179 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_0181 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2905 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Cphy_1480 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Cphy_1479 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Cphy_1481 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Cphy_2301 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cpy03018]
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Cphy_2763 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Cphy_2001 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Cphy_2866 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Cphy_3818 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_2006 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_1154 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Cphy_0410 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Cphy_2598 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Cphy_2294 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_2311 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Cphy_3289 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cpy03030]
D Cphy_0335 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Cphy_0145 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_2619 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_0046 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Cphy_3913 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Cphy_1962 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Cphy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Cphy_3756 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Cphy_3522 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_2382 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Cphy_2400 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cpy03410]
D Cphy_2022 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Cphy_0960 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Cphy_0144 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Cphy_2839 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Cphy_3362 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Cphy_3389 Formamidopyrimidine-DNA glycolase, H2TH DNA binding K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Cphy_0982 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Cphy_1303 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Cphy_0876 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cpy03420]
D Cphy_0112 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Cphy_0260 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Cphy_0259 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Cphy_0327 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Cphy_1673 Excinuclease ABC C subunit domain protein K03703 uvrC; excinuclease ABC subunit C
D Cphy_1352 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_0222 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_1632 ATP-dependent DNA helicase rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Cphy_0224 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:cpy03430]
D Cphy_2381 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Cphy_0153 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Cphy_1218 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D Cphy_2380 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Cphy_1352 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_0222 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_1632 ATP-dependent DNA helicase rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_2514 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Cphy_2513 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Cphy_0876 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_0335 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Cphy_0145 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_2619 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Cphy_0046 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Cphy_1962 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Cphy_3913 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cpy03440]
D Cphy_0876 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Cphy_0647 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Cphy_0048 recombination protein RecR K06187 recR; recombination protein RecR
D Cphy_2439 recA protein K03553 recA; recombination protein RecA
D Cphy_1333 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Cphy_1334 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Cphy_2890 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Cphy_0246 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Cphy_0335 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Cphy_0145 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_2619 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Cphy_0046 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Cphy_1962 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Cphy_3913 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Cphy_2493 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:cpy03450]
D Cphy_1728 Ku protein K10979 ku; DNA end-binding protein Ku
D Cphy_1729 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cpy02010]
D Cphy_1826 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Cphy_1827 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Cphy_1828 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Cphy_1829 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Cphy_1482 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Cphy_1483 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Cphy_1484 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Cphy_2139 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Cphy_2142 conserved hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D Cphy_2143 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Cphy_2144 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Cphy_0894 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Cphy_0895 Ornithine carbamoyltransferase K11070 potC; spermidine/putrescine transport system permease protein
D Cphy_0896 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Cphy_0897 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Cphy_0119 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Cphy_0118 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Cphy_3611 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_1879 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2308 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2347 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2307 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2346 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_1880 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_1881 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2306 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2345 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_3409 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_3858 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1529 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1013 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1530 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3408 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3859 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3407 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_1531 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3860 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3590 extracellular solute-binding protein family 1 K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D Cphy_3589 binding-protein-dependent transport systems inner membrane component K10189 lacF; lactose/L-arabinose transport system permease protein
D Cphy_3588 binding-protein-dependent transport systems inner membrane component K10190 lacG; lactose/L-arabinose transport system permease protein
D Cphy_0619 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D Cphy_0620 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D Cphy_0621 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D Cphy_0341 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0487 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0663 ABC-type sugar transport system periplasmic component-like protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0697 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0775 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0931 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1118 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1708 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1723 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1918 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2654 sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2733 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3240 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0862 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3210 putative multiple sugar transport system substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1717 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1549 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3570 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2569 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0395 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2193 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0860 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0339 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0393 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0485 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0664 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0929 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1119 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1715 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1916 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2192 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2656 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2732 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3242 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3209 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1709 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0695 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2571 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0773 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1547 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3569 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2570 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0665 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0861 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0340 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0394 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0486 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0696 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0930 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1120 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1716 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1917 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2655 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2731 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3208 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1710 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0774 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1548 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3241 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3568 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2191 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1792 extracellular solute-binding protein family 1 K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D Cphy_0573 extracellular solute-binding protein family 1 K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D Cphy_0574 binding-protein-dependent transport systems inner membrane component K10201 ngcF; N-acetylglucosamine transport system permease protein
D Cphy_0575 binding-protein-dependent transport systems inner membrane component K10202 ngcG; N-acetylglucosamine transport system permease protein
D Cphy_2466 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Cphy_2465 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Cphy_2464 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Cphy_1585 putative solute-binding component of ABC transporter K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Cphy_1587 Monosaccharide-transporting ATPase K10547 gguB; putative multiple sugar transport system permease protein
D Cphy_1586 ABC transporter related K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_0755 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_0764 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_3269 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_2034 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_3267 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_0757 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_0766 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_2036 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_3266 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0758 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0767 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_2037 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0765 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_0756 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_3268 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_2035 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_2009 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2012 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2251 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1132 putative solute-binding component of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_3277 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1581 ABC-type sugar transport system periplasmic component-like protein K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2011 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_1133 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_3278 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_2010 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_3280 ABC-type sugar transport system ATPase component-like protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_1134 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_3279 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_2243 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D Cphy_2241 Monosaccharide-transporting ATPase K10541 mglC; methyl-galactoside transport system permease protein
D Cphy_2242 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D Cphy_1584 periplasmic binding protein/LacI transcriptional regulator K10543 xylF; D-xylose transport system substrate-binding protein
D Cphy_0583 putative sugar ABC transporter, substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein
D Cphy_0581 Monosaccharide-transporting ATPase K10560 rhaP; rhamnose transport system permease protein
D Cphy_0582 Monosaccharide-transporting ATPase K10561 rhaQ; rhamnose transport system permease protein
D Cphy_0580 ABC transporter related K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_1667 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_2834 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_1668 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Cphy_2833 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Cphy_1669 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Cphy_2832 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Cphy_2831 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1666 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1670 ABC transporter related K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1448 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D Cphy_1450 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D Cphy_1451 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D Cphy_1449 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Cphy_0847 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Cphy_0848 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein
D Cphy_0849 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Cphy_3536 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_1257 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_3535 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_1258 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_3534 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_1259 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_3533 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_1260 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_3532 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1261 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1233 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Cphy_1231 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Cphy_1230 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Cphy_3108 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_2000 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_1996 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Cphy_1997 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3106 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3105 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_1998 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_3104 ABC transporter related K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_1999 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_3491 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Cphy_0438 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Cphy_3489 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Cphy_0440 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Cphy_3490 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Cphy_0439 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Cphy_1386 Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D Cphy_1385 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Cphy_0681 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Cphy_1383 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Cphy_0691 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Cphy_1384 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Cphy_0692 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Cphy_3677 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Cphy_3635 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Cphy_3637 ABC transporter related K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Cphy_3636 ABC transporter related K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Cphy_3547 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Cphy_3546 ABC transporter related K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Cphy_0115 ABC-2 type transporter K09696 natB; sodium transport system permease protein
D Cphy_0114 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Cphy_3331 protein of unknown function DUF214 K19084 braE; bacitracin transport system permease protein
D Cphy_3332 ABC transporter related K19083 braD; bacitracin transport system ATP-binding protein
D Cphy_3608 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Cphy_3609 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Cphy_2321 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D Cphy_2320 ABC transporter related K16921 ytrB; acetoin utilization transport system ATP-binding protein
D Cphy_0018 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0442 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2136 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2137 ABC-type multidrug transport system ATPase and permease components-like protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3781 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0017 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2135 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0443 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3782 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0099 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3380 ABC transporter transmembrane region K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1681 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0855 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2430 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1237 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1238 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0856 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0100 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2429 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3379 ABC transporter transmembrane region K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1682 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1598 ABC transporter related K18231 msr; macrolide transport system ATP-binding/permease protein
D Cphy_2220 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Cphy_2020 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:cpy02060]
D Cphy_1770 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Cphy_3906 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Cphy_1769 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_3549 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_2300 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_1768 PTS system, glucose subfamily, IIA subunit K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D Cphy_2762 sugar-specific permease EIIA 1 domain K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Cphy_3901 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:cpy03070]
D Cphy_0716 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein
D Cphy_3695 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Cphy_2867 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Cphy_3647 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Cphy_3437 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Cphy_3943 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Cphy_0256 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Cphy_2442 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Cphy_2409 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Cphy_0401 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D Cphy_0400 sec-independent translocation protein mttA/Hcf106 K03117 tatB; sec-independent protein translocase protein TatB
D Cphy_0402 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cpy02020]
D Cphy_2826 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_2829 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_2827 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Cphy_1467 two component transcriptional regulator, winged helix family K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Cphy_1667 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_2834 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_1346 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0156 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3543 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3850 flagellin domain protein K02406 fliC; flagellin
D Cphy_0315 flagellin domain protein K02406 fliC; flagellin
D Cphy_2685 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Cphy_2706 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Cphy_0742 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Cphy_0598 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Cphy_0596 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D Cphy_0704 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Cphy_2855 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Cphy_1986 two component transcriptional regulator, winged helix family K07668 vicR; two-component system, OmpR family, response regulator VicR
D Cphy_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Cphy_3331 protein of unknown function DUF214 K19084 braE; bacitracin transport system permease protein
D Cphy_3332 ABC transporter related K19083 braD; bacitracin transport system ATP-binding protein
D Cphy_3333 integral membrane sensor signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Cphy_3334 two component transcriptional regulator, winged helix family K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Cphy_1288 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_2854 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_0964 integral membrane sensor signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_1287 two component transcriptional regulator, winged helix family K18344 vanRB; two-component system, OmpR family, response regulator VanR
D Cphy_3518 two component transcriptional regulator, winged helix family K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Cphy_0016 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D Cphy_0015 two component transcriptional regulator, winged helix family K18941 arlR; two-component system, OmpR family, response regulator ArlR
D Cphy_2497 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Cphy_0409 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Cphy_0114 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Cphy_0115 ABC-2 type transporter K09696 natB; sodium transport system permease protein
D Cphy_2861 hypothetical protein K07813 agrB; accessory gene regulator B
D Cphy_0511 PAS/PAC sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Cphy_0309 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Cphy_3937 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Cphy_0837 AAA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Cphy_0032 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Cphy_0033 Flp pilus assembly protein TadB-like protein K12510 tadB; tight adherence protein B
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_2448 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Cphy_0201 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0382 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0285 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0436 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1639 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1172 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1520 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1053 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1474 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0604 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0566 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1976 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3094 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3206 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3450 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3454 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3867 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_2689 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_0258 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_2690 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Cphy_3528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2701 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2691 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Cphy_2843 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Cphy_3886 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0526 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1721 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2008 multi-sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3406 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3212 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0863 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1582 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0772 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1393 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0578 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0617 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0495 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0292 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3281 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3857 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2140 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2252 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3033 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3211 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2141 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0771 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1583 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1722 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0864 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1394 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0525 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0579 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0618 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0496 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0293 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3282 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3405 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3697 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3861 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3887 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2007 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2734 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2253 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3034 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1040 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Cphy_1301 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D Cphy_2058 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_3202 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_3367 Cellulose 1,4-beta-cellobiosidase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_1163 Cellulase K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Cphy_0303 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cpy02024]
D Cphy_0889 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Cphy_3848 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Cphy_3847 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Cphy_2592 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Cphy_0742 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Cphy_3536 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_1257 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_3535 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_1258 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_3534 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_1259 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_3533 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_1260 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_3532 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1261 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1157 nucleic acid binding OB-fold tRNA/helicase-type K20276 bapA; large repetitive protein
D Cphy_2276 Mannan endo-1,4-beta-mannosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_1071 glycoside hydrolase family 26 K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_2128 Mannan endo-1,4-beta-mannosidase, Cellulose 1,4-beta-cellobiosidase K01218 gmuG; mannan endo-1,4-beta-mannosidase [EC:3.2.1.78]
D Cphy_1952 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Cphy_1299 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Cphy_2861 hypothetical protein K07813 agrB; accessory gene regulator B
D Cphy_3108 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_2000 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_1996 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Cphy_1997 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3106 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3105 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_1998 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_3104 ABC transporter related K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_1999 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_0431 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0812 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0805 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0806 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0813 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_3107 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0432 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0433 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0814 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0807 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0808 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0815 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0434 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0816 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Cphy_0809 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Cphy_3943 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Cphy_0716 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein
D Cphy_3695 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Cphy_2867 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Cphy_3647 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Cphy_3437 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Cphy_0256 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Cphy_2442 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Cphy_2409 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Cphy_2497 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Cphy_1590 transcriptional regulator, XRE family K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cpy02030]
D Cphy_0201 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0382 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0285 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0436 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1639 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1172 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1520 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1053 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1474 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0604 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0566 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1976 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3094 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3206 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3450 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3454 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3867 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_2009 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2012 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2251 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1132 putative solute-binding component of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_3277 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1581 ABC-type sugar transport system periplasmic component-like protein K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2243 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D Cphy_2690 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Cphy_2689 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_0258 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_3528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2701 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2688 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Cphy_0151 CheC domain protein K03409 cheX; chemotaxis protein CheX
D Cphy_2691 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Cphy_2843 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Cphy_2687 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Cphy_2448 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Cphy_2716 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Cphy_2703 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Cphy_2702 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Cphy_2706 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Cphy_2705 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cpy02040]
D Cphy_2718 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Cphy_2717 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Cphy_2716 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Cphy_2715 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Cphy_2714 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Cphy_2713 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Cphy_2711 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Cphy_2703 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Cphy_2702 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Cphy_2700 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Cphy_2699 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Cphy_2698 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Cphy_2697 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Cphy_2695 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Cphy_2696 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Cphy_2720 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Cphy_2719 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Cphy_2710 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Cphy_2708 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Cphy_0243 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D Cphy_0244 protein of unknown function DUF1078 domain protein K02392 flgG; flagellar basal-body rod protein FlgG
D Cphy_0245 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D Cphy_0306 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Cphy_0305 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Cphy_0307 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Cphy_3850 flagellin domain protein K02406 fliC; flagellin
D Cphy_0315 flagellin domain protein K02406 fliC; flagellin
D Cphy_0312 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Cphy_0313 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Cphy_3849 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS
D Cphy_2706 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Cphy_2705 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Cphy_0303 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Cphy_3521 RNA polymerase, sigma 70 subunit, RpoD family K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_0234 RNA polymerase, sigma 70 subunit, RpoD family K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_2059 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_2685 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells [PATH:cpy04820]
D Cphy_1694 Collagen triple helix repeat K06236 COL1A; collagen type I alpha
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D Cphy_3258 homocysteine S-methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cpy01501]
D Cphy_2332 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Cphy_1125 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Cphy_3108 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_2000 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_1996 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Cphy_1997 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3106 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3105 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_1998 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_3104 ABC transporter related K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_1999 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_2068 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Cphy_2069 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2354 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2324 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_0899 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Cphy_0497 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_0498 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_2372 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cpy01502]
D Cphy_1288 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_2854 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_0964 integral membrane sensor signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_1287 two component transcriptional regulator, winged helix family K18344 vanRB; two-component system, OmpR family, response regulator VanR
D Cphy_3518 two component transcriptional regulator, winged helix family K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Cphy_1644 D-alanine--D-alanine ligase domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0084 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_3791 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0905 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Cphy_2494 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Cphy_3351 glycosyl transferase family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Cphy_3727 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cpy01503]
D Cphy_3748 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0068 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2258 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2818 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0368 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_1346 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0156 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3543 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0899 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cpy01000]
C 01001 Protein kinases [BR:cpy01001]
D Cphy_2486 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Cphy_3751 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Cphy_3799 putative anti-sigma regulatory factor, serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Cphy_1213 capsular exopolysaccharide family K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Cphy_2826 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_2829 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_3333 integral membrane sensor signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Cphy_1288 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_2854 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_0964 integral membrane sensor signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_0016 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D Cphy_0511 PAS/PAC sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Cphy_3937 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Cphy_2690 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Cphy_3886 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0526 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1721 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2008 multi-sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3406 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3212 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0863 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1582 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0772 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1393 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0578 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0617 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0495 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0292 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3281 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3857 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2140 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2252 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3033 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cpy01009]
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Cphy_2487 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:cpy01002]
D Cphy_0324 peptidase A8 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Cphy_2357 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Cphy_3808 putative lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Cphy_0038 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_2819 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_2317 GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78]
D Cphy_2470 peptidase U4 sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D Cphy_2057 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Cphy_0264 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Cphy_2536 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D Cphy_0724 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Cphy_0318 Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Cphy_3044 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Cphy_3414 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Cphy_2936 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Cphy_0371 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D Cphy_0567 conserved hypothetical protein K08600 srtB; sortase B [EC:3.4.22.71]
D Cphy_2861 hypothetical protein K07813 agrB; accessory gene regulator B
D Cphy_0673 Abortive infection protein K07052 K07052; CAAX protease family protein
D Cphy_0252 Abortive infection protein K07052 K07052; CAAX protease family protein
D Cphy_3228 Abortive infection protein K07052 K07052; CAAX protease family protein
D Cphy_2236 Abortive infection protein K07052 K07052; CAAX protease family protein
D Cphy_3699 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D Cphy_0645 Peptidase M16C associated domain protein K06972 PITRM1; presequence protease [EC:3.4.24.-]
D Cphy_2184 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Cphy_3615 peptidase M20 K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-]
D Cphy_3349 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D Cphy_3485 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D Cphy_2796 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D Cphy_2289 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Cphy_3439 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Cphy_3645 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Cphy_2530 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Cphy_3472 Leucyl aminopeptidase (aminopeptidase T)-like protein K19689 ampS; aminopeptidase [EC:3.4.11.-]
D Cphy_3163 Leucyl aminopeptidase (aminopeptidase T)-like protein K19689 ampS; aminopeptidase [EC:3.4.11.-]
D Cphy_0759 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D Cphy_0141 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_0326 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_2049 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_1100 peptidase M42 family protein K01269 yhfE; aminopeptidase [EC:3.4.11.-]
D Cphy_2621 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Cphy_3579 hypothetical protein K16922 yydH; putative peptide zinc metalloprotease protein
D Cphy_2068 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Cphy_1346 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0156 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3543 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3062 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D Cphy_2582 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2587 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_1197 Peptidoglycan-binding domain 1 protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2366 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_3929 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_0377 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Cphy_0972 Endopeptidase Clp K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Cphy_0379 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Cphy_2543 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D Cphy_2402 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2284 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2877 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_2878 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_1095 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Cphy_3606 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Cphy_3342 peptidase S51 dipeptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D Cphy_2498 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D Cphy_0745 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Cphy_0633 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Cphy_1336 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Cphy_2291 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Cphy_1080 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Cphy_0071 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D Cphy_0070 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
D Cphy_3821 band 7 protein K04087 hflC; modulator of FtsH protease HflC
D Cphy_3822 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:cpy01003]
D Cphy_1892 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Cphy_2212 glycosyl transferase family 2 K00752 hasA; hyaluronan synthase [EC:2.4.1.212]
D Cphy_2496 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Cphy_0497 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_0498 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cpy01005]
D Cphy_0299 glycosyl transferase family 2 K12999 rgpI; glucosyltransferase [EC:2.4.1.-]
D Cphy_3507 sugar transferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cpy01011]
D Cphy_3879 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_2473 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Cphy_0330 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Cphy_0107 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Cphy_2475 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Cphy_2495 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Cphy_1644 D-alanine--D-alanine ligase domain protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0084 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_3791 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Cphy_0905 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Cphy_3790 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Cphy_0745 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Cphy_0633 peptidase U61 LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Cphy_3351 glycosyl transferase family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Cphy_3727 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Cphy_2758 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Cphy_0497 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_0498 glycosyl transferase family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Cphy_2372 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Cphy_2476 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Cphy_2477 Peptidoglycan glycosyltransferase K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Cphy_1337 penicillin-binding protein transpeptidase K05364 pbpA; penicillin-binding protein A
D Cphy_2582 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2587 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_1197 Peptidoglycan-binding domain 1 protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_2366 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_3929 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Cphy_0724 NLP/P60 protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D Cphy_2289 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D Cphy_0567 conserved hypothetical protein K08600 srtB; sortase B [EC:3.4.22.71]
D Cphy_2293 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Cphy_3748 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0068 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2258 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2818 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0368 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cpy01004]
D Cphy_0516 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Cphy_0518 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Cphy_0517 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3614 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_3619 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Cphy_0520 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Cphy_1286 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D Cphy_2447 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Cphy_2389 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1893 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Cphy_1941 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_3787 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Cphy_0233 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cpy01006]
D Cphy_2512 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Cphy_2624 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Cphy_2379 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:cpy01007]
D Cphy_3294 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Cphy_0221 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Cphy_2578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_0761 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_3480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Cphy_3324 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cphy_1535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_1274 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_0025 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cphy_3832 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Cphy_0472 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Cphy_0938 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cphy_2574 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_3556 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_0553 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Cphy_0095 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Cphy_1139 tRNA synthetase class II (D K and N) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_0636 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_1009 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_0552 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_0648 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2067 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_1115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Cphy_3837 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cphy_2665 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_0748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_0956 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_2617 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_3477 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Cphy_3476 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Cphy_3530 aminotransferase class I and II K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D Cphy_0631 aminotransferase class I and II K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Cphy_0150 aminotransferase class I and II K10907 K10907; aminotransferase [EC:2.6.1.-]
D Cphy_3529 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Cphy_0455 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Cphy_1951 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Cphy_1373 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Cphy_1789 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Cphy_0537 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Cphy_3383 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450 [BR:cpy00199]
D Cphy_2911 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:cpy00194]
D Cphy_3735 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Cphy_3736 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Cphy_3737 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Cphy_3738 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Cphy_3739 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Cphy_3740 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Cphy_3741 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Cphy_3742 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Cphy_3744 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cpy03000]
D Cphy_2924 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cphy_1546 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D Cphy_1168 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D Cphy_0971 transcriptional regulator, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D Cphy_2556 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3174 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3181 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_0165 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_1683 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_1472 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_0674 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3132 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3138 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3142 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_3219 transcription activator effector binding K13653 K13653; AraC family transcriptional regulator
D Cphy_2107 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Cphy_1745 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Cphy_3361 transcriptional regulator, LysR family K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D Cphy_1902 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D Cphy_0210 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Cphy_1060 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_1821 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_1454 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_0568 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_1876 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_1883 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_2278 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_2467 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_3312 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_3700 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Cphy_0484 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D Cphy_0590 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Cphy_1077 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Cphy_2353 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Cphy_1313 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Cphy_1561 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Cphy_3829 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Cphy_1297 putative transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Cphy_2769 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Cphy_0989 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Cphy_2319 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
D Cphy_1633 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Cphy_1837 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Cphy_3621 transcriptional regulator, TetR family K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor
D Cphy_1856 transcriptional regulator, TetR family K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Cphy_1844 transcriptional regulator, MarR family K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D Cphy_2661 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Cphy_2295 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Cphy_0437 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Cphy_1195 putative ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Cphy_3815 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D Cphy_0740 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Cphy_1761 cyclic nucleotide-binding protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D Cphy_1300 cyclic nucleotide-binding protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D Cphy_1824 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Cphy_0009 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Cphy_2151 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Cphy_2628 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Cphy_2129 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Cphy_0116 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Cphy_0179 transcriptional regulator, ArsR family K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D Cphy_2071 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Cphy_1270 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Cphy_1963 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Cphy_3562 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Cphy_2018 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Cphy_1191 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Cphy_2069 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2354 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2324 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2779 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Cphy_1590 transcriptional regulator, XRE family K20480 nprR; HTH-type transcriptional regulator, quorum sensing regulator NprR
D Cphy_2110 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D Cphy_3610 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D Cphy_0901 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Cphy_2721 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Cphy_1859 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Cphy_2424 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Cphy_0954 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Cphy_0690 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Cphy_3876 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Cphy_2133 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Cphy_1742 transcriptional regulator, CdaR K23253 putR; PucR family transcriptional regulator, proline-responsive transcriptional activator
D Cphy_3909 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Cphy_2992 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Cphy_0127 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Cphy_3934 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Cphy_2664 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Cphy_0319 glycerol-3-phosphate responsive antiterminator, GlpP K02443 glpP; glycerol uptake operon antiterminator
D Cphy_2508 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D Cphy_2313 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Cphy_1273 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Cphy_2725 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Cphy_2480 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:cpy03021]
D Cphy_0224 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Cphy_3639 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Cphy_3687 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Cphy_3686 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Cphy_2879 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Cphy_3521 RNA polymerase, sigma 70 subunit, RpoD family K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_0234 RNA polymerase, sigma 70 subunit, RpoD family K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_2059 hypothetical protein K03086 rpoD; RNA polymerase primary sigma factor
D Cphy_0912 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_1045 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_1579 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_1094 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_3098 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_3337 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Cphy_0478 RNA polymerase, sigma 28 subunit, FliA/WhiG family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Cphy_2468 RNA polymerase, sigma 28 subunit, FliA/WhiG family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Cphy_2469 RNA polymerase, sigma 28 subunit, FliA/WhiG family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Cphy_2290 RNA polymerase, sigma 28 subunit, FliA/WhiG family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Cphy_3321 RNA polymerase, sigma-24 subunit, ECF subfamily K27000 sigH; RNA polymerase sigma-H factor
D Cphy_2685 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Cphy_2777 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Cphy_2515 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Cphy_3694 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Cphy_3799 putative anti-sigma regulatory factor, serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D Cphy_3557 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Cphy_0714 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D Cphy_0410 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cpy03019]
D Cphy_2563 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Cphy_2444 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Cphy_2294 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Cphy_2598 RNA binding metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Cphy_2866 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Cphy_0158 metal dependent phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Cphy_2001 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Cphy_3818 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_2006 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_1154 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Cphy_2763 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Cphy_0410 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Cphy_0336 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Cphy_2311 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Cphy_3289 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Cphy_0309 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Cphy_0331 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:cpy03011]
D Cphy_2449 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Cphy_0021 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1
D Cphy_2680 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D Cphy_3661 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D Cphy_3640 RNA-binding S4 domain protein K02986 RP-S4; small subunit ribosomal protein S4
D Cphy_3650 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D Cphy_3774 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D Cphy_0236 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D Cphy_3653 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D Cphy_3627 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D Cphy_3668 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D Cphy_3641 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D Cphy_0235 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D Cphy_3642 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D Cphy_3654 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Cphy_2767 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D Cphy_2408 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D Cphy_3658 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D Cphy_3772 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D Cphy_3663 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D Cphy_2318 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D Cphy_2616 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D Cphy_3692 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D Cphy_3664 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D Cphy_3667 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D Cphy_3666 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D Cphy_3655 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D Cphy_3652 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D Cphy_3757 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D Cphy_3691 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D Cphy_3693 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D Cphy_3690 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D Cphy_3628 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D Cphy_3657 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D Cphy_3648 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D Cphy_3660 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D Cphy_3638 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D Cphy_3651 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D Cphy_2403 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D Cphy_0449 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D Cphy_2551 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D Cphy_3662 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D Cphy_3665 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D Cphy_3656 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D Cphy_2549 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D Cphy_2893 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D Cphy_3659 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D Cphy_3649 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D Cphy_0411 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D Cphy_1329 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D Cphy_3696 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D Cphy_3946 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D Cphy_0448 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D Cphy_3643 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D Cphy_1809 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Cphy_R0014 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0091 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0092 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0026 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0084 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0029 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0087 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cpy03009]
D Cphy_2444 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Cphy_0646 GTP-binding protein Era K03595 era; GTPase
D Cphy_2548 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Cphy_2777 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Cphy_2515 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Cphy_3694 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D Cphy_2791 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Cphy_3899 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Cphy_2489 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Cphy_3378 methyltransferase small K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Cphy_2303 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Cphy_3939 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Cphy_2479 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Cphy_0274 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Cphy_3910 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Cphy_2510 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Cphy_3322 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Cphy_0910 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Cphy_1343 putative RNA methylase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Cphy_3671 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Cphy_2488 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Cphy_2221 radical SAM enzyme, Cfr family K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D Cphy_0159 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Cphy_1654 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Cphy_1355 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Cphy_2789 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Cphy_1041 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Cphy_2356 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Cphy_2928 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D Cphy_2160 hypothetical protein K21515 aviRa; 23S rRNA (guanine2535-N1)-methyltransferase [EC:2.1.1.209]
D Cphy_0348 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Cphy_2754 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D Cphy_2406 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Cphy_2455 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Cphy_3580 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D Cphy_2309 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Cphy_2563 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D Cphy_2297 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Cphy_3323 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D Cphy_3818 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_2006 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D Cphy_2485 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_1138 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_1463 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Cphy_2390 small GTP-binding protein K03977 engA; GTPase
D Cphy_2401 GTP-binding protein HSR1-related K14540 rbgA; ribosome biogenesis GTPase A
D Cphy_0534 GTP-binding proten HflX K03665 hflX; GTPase
D Cphy_1093 GTP-binding proten HflX K03665 hflX; GTPase
D Cphy_3747 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Cphy_0548 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Cphy_2773 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Cphy_2778 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Cphy_0003 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
D Cphy_2544 iojap-like protein K09710 ybeB; ribosome-associated protein
D Cphy_2609 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Cphy_2547 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D Cphy_0255 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D Cphy_2482 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Cphy_1328 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:cpy03016]
D Cphy_0350 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Cphy_3827 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Cphy_3837 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cphy_3832 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Cphy_0938 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cphy_0025 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cphy_3294 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Cphy_1535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_1274 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_2574 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_3556 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cphy_0553 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Cphy_0956 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_2617 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cphy_0095 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Cphy_0648 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2067 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2665 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_0748 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cphy_1115 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Cphy_3324 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cphy_0472 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Cphy_1009 Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_0552 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cphy_3477 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Cphy_3476 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Cphy_2578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_0761 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_3480 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Cphy_3718 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Cphy_3726 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Cphy_3917 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Cphy_0126 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Cphy_0879 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Cphy_3634 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Cphy_2771 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Cphy_2907 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2302 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2179 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_0181 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_3747 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Cphy_2379 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Cphy_3941 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Cphy_3940 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Cphy_1486 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Cphy_3945 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Cphy_R0097 RNA component of RNaseP K01978 rnpB; M1 RNA
D Cphy_1002 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Cphy_1139 tRNA synthetase class II (D K and N) K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_0636 aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cphy_0221 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Cphy_2562 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Cphy_3893 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Cphy_0425 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Cphy_2599 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Cphy_2299 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Cphy_2405 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Cphy_3520 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Cphy_0152 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Cphy_0417 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D Cphy_2422 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D Cphy_2905 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Cphy_0182 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Cphy_2259 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Cphy_2280 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Cphy_2044 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Cphy_2568 Fe-S protein-like protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Cphy_3438 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Cphy_2301 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Cphy_0139 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Cphy_0347 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Cphy_0352 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Cphy_0346 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Cphy_1307 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Cphy_3486 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Cphy_1325 protein of unknown function DUF795 K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D Cphy_2866 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Cphy_2763 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cpy03012]
D Cphy_2774 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Cphy_0447 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Cphy_0900 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Cphy_0937 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Cphy_0961 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Cphy_1922 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Cphy_2679 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Cphy_0238 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Cphy_2537 small GTP-binding protein K02355 fusA; elongation factor G
D Cphy_0237 translation elongation factor G K02355 fusA; elongation factor G
D Cphy_0414 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D Cphy_2625 ribosome recycling factor K02838 frr; ribosome recycling factor
D Cphy_0413 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Cphy_0111 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Cphy_3644 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D Cphy_2529 translation elongation factor P K02356 efp; elongation factor P
D Cphy_0257 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D Cphy_3596 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:cpy03110]
D Cphy_3819 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Cphy_3461 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Cphy_0378 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Cphy_3540 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Cphy_2311 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Cphy_3289 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Cphy_2310 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Cphy_0208 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Cphy_3417 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D Cphy_2312 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Cphy_3290 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Cphy_1346 peptidase S1 and S6 chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0156 PDZ/DHR/GLGF domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_3543 2-alkenal reductase K04771 degP; serine protease Do [EC:3.4.21.107]
D Cphy_0141 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_0326 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_2049 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Cphy_3742 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Cphy_1565 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Cphy_1736 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Cphy_1563 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Cphy_1737 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Cphy_3239 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_3571 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D Cphy_2857 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Cphy_1255 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Cphy_0113 hypothetical protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Cphy_0739 thioredoxin K03671 TXN; thioredoxin
D Cphy_3919 thioredoxin K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:cpy04131]
D Cphy_1144 band 7 protein K07192 FLOT; flotillin
D Cphy_2152 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1698 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1697 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1720 glycoside hydrolase family 38 K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D Cphy_2876 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2229 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2651 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_3303 Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_0741 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_2900 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:cpy04121]
C 03051 Proteasome [BR:cpy03051]
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cpy03032]
D Cphy_2382 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Cphy_2924 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cphy_0133 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Cphy_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Cphy_3756 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Cphy_0105 AAA ATPase K02315 dnaC; DNA replication protein DnaC
D Cphy_3522 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_0335 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Cphy_0145 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_2619 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Cphy_1962 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Cphy_3913 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Cphy_0046 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Cphy_2400 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Cphy_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Cphy_0295 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Cphy_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Cphy_0296 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Cphy_2722 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Cphy_3272 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cpy03036]
D Cphy_2924 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cphy_2444 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Cphy_1144 band 7 protein K07192 FLOT; flotillin
D Cphy_0133 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Cphy_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Cphy_2443 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Cphy_2584 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D Cphy_2583 segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D Cphy_3609 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Cphy_2757 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Cphy_2478 Septum formation initiator K03586 ftsL; cell division protein FtsL
D Cphy_2472 hypothetical protein K03589 ftsQ; cell division protein FtsQ
D Cphy_2474 cell cycle protein K03588 ftsW; cell division protein FtsW
D Cphy_3608 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Cphy_2471 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Cphy_1335 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA
D Cphy_3748 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0068 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2258 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_2818 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0368 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Cphy_0899 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Cphy_2371 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Cphy_2370 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Cphy_2369 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Cphy_2359 DivIVA family protein K04074 divIVA; cell division initiation protein
D Cphy_2361 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF
D Cphy_0242 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2375 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2374 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Cphy_2373 conserved hypothetical protein K03571 mreD; rod shape-determining protein MreD
D Cphy_2368 cell cycle protein K05837 rodA; rod shape determining protein RodA
D Cphy_3935 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Cphy_3934 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Cphy_3940 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Cphy_3939 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Cphy_2195 integrase family protein K03733 xerC; integrase/recombinase XerC
D Cphy_2593 integrase family protein K04763 xerD; integrase/recombinase XerD
D Cphy_0273 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Cphy_0380 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein
D Cphy_0332 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:cpy03400]
D Cphy_0286 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Cphy_2839 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Cphy_3362 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Cphy_2022 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Cphy_0960 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Cphy_0144 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Cphy_0224 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D Cphy_1617 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_3136 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_0022 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_0122 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_1506 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_3133 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Cphy_3038 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Cphy_1745 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Cphy_3389 Formamidopyrimidine-DNA glycolase, H2TH DNA binding K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Cphy_0982 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Cphy_1303 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Cphy_0876 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Cphy_2927 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Cphy_0260 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D Cphy_0259 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Cphy_0327 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D Cphy_1673 Excinuclease ABC C subunit domain protein K03703 uvrC; excinuclease ABC subunit C
D Cphy_1352 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_0222 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_1632 ATP-dependent DNA helicase rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Cphy_3687 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Cphy_3686 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Cphy_3639 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Cphy_2879 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Cphy_0112 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Cphy_2381 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Cphy_0153 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Cphy_1218 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D Cphy_2380 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Cphy_2514 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Cphy_2513 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Cphy_0335 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Cphy_0145 DNA polymerase III, epsilon subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_2619 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Cphy_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Cphy_1962 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Cphy_3913 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Cphy_0046 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_0246 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Cphy_2439 recA protein K03553 recA; recombination protein RecA
D Cphy_1333 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Cphy_1334 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Cphy_2493 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Cphy_1246 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Cphy_1245 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D Cphy_3459 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Cphy_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Cphy_2890 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Cphy_0647 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Cphy_0048 recombination protein RecR K06187 recR; recombination protein RecR
D Cphy_2499 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Cphy_2788 Recombination protein U K03700 recU; recombination protein U
D Cphy_3423 recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Cphy_3424 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Cphy_1728 Ku protein K10979 ku; DNA end-binding protein Ku
D Cphy_1729 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Cphy_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Cphy_0295 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Cphy_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Cphy_0296 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Cphy_2722 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Cphy_0133 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D Cphy_1154 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Cphy_3921 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Cphy_2727 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Cphy_2148 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V
D Cphy_2543 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D Cphy_2438 regulatory protein RecX K03565 recX; regulatory protein
D Cphy_1544 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Cphy_0708 DEAD/DEAH box helicase domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D Cphy_3223 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Cphy_3222 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Cphy_2772 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:cpy03029]
D Cphy_2774 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D Cphy_0447 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D Cphy_2679 translation elongation factor Ts K02357 tsf; elongation factor Ts
D Cphy_0238 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Cphy_2537 small GTP-binding protein K02355 fusA; elongation factor G
D Cphy_0237 translation elongation factor G K02355 fusA; elongation factor G
D Cphy_0646 GTP-binding protein Era K03595 era; GTPase
D Cphy_2578 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_0761 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cphy_0938 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cphy_0553 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Cphy_0648 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_2067 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cphy_1535 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_1274 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cphy_0638 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Cphy_0639 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Cphy_0637 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Cphy_2987 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_3773 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Cphy_2311 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Cphy_2312 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Cphy_3289 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Cphy_3290 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Cphy_2310 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Cphy_0208 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D Cphy_2907 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2302 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2179 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_0181 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_3943 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cpy02000]
D Cphy_0018 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0442 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2136 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2137 ABC-type multidrug transport system ATPase and permease components-like protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3781 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0017 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2135 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0443 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3782 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0099 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3380 ABC transporter transmembrane region K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1681 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0855 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2430 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1237 ABC transporter related K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1238 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0856 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0100 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_2429 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_3379 ABC transporter transmembrane region K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_1682 ABC transporter related K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Cphy_0337 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_1056 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_3115 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_3116 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_2201 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_2200 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_3066 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Cphy_3067 ABC transporter related K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D Cphy_1598 ABC transporter related K18231 msr; macrolide transport system ATP-binding/permease protein
D Cphy_2220 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Cphy_2020 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Cphy_3897 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D Cphy_1826 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Cphy_1827 sulfate ABC transporter, inner membrane subunit CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Cphy_1828 sulfate ABC transporter, inner membrane subunit K02047 cysW; sulfate/thiosulfate transport system permease protein
D Cphy_1829 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Cphy_1482 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Cphy_1483 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D Cphy_1484 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Cphy_2139 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Cphy_2142 conserved hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D Cphy_2143 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Cphy_2144 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Cphy_0894 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Cphy_0895 Ornithine carbamoyltransferase K11070 potC; spermidine/putrescine transport system permease protein
D Cphy_0896 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Cphy_0897 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Cphy_0119 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Cphy_0118 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Cphy_1347 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Cphy_3870 conserved hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Cphy_0802 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Cphy_3841 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Cphy_1151 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Cphy_0803 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Cphy_3840 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Cphy_3611 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_1074 extracellular solute-binding protein family 1 K25086 musE; maltose transport system substrate-binding protein
D Cphy_1075 binding-protein-dependent transport systems inner membrane component K25087 musF; maltose transport system permease protein
D Cphy_1076 binding-protein-dependent transport systems inner membrane component K25088 musG; maltose transport system permease protein
D Cphy_1879 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2308 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2347 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D Cphy_2307 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2346 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_1880 Fructose-bisphosphate aldolase K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_1881 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2306 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_2345 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D Cphy_3409 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_3858 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1529 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1013 extracellular solute-binding protein family 1 K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D Cphy_1530 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3408 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3859 binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3407 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_1531 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_3860 binding-protein-dependent transport systems inner membrane component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D Cphy_1792 extracellular solute-binding protein family 1 K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D Cphy_0573 extracellular solute-binding protein family 1 K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D Cphy_0574 binding-protein-dependent transport systems inner membrane component K10201 ngcF; N-acetylglucosamine transport system permease protein
D Cphy_0575 binding-protein-dependent transport systems inner membrane component K10202 ngcG; N-acetylglucosamine transport system permease protein
D Cphy_2466 extracellular solute-binding protein family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Cphy_2465 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Cphy_2464 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Cphy_3590 extracellular solute-binding protein family 1 K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D Cphy_3589 binding-protein-dependent transport systems inner membrane component K10189 lacF; lactose/L-arabinose transport system permease protein
D Cphy_3588 binding-protein-dependent transport systems inner membrane component K10190 lacG; lactose/L-arabinose transport system permease protein
D Cphy_0619 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D Cphy_0620 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D Cphy_0621 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D Cphy_0341 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0487 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0663 ABC-type sugar transport system periplasmic component-like protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0697 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0775 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0931 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1118 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1708 extracellular solute-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1723 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1918 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2654 sugar ABC transporter substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2733 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3240 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0862 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3210 putative multiple sugar transport system substrate-binding protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1717 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_1549 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_3570 hypothetical protein K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2569 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0395 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_2193 extracellular solute-binding protein family 1 K17318 lplA; putative aldouronate transport system substrate-binding protein
D Cphy_0860 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0339 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0393 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0485 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0664 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0929 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1119 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1715 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1916 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2192 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2656 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2732 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3242 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3209 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1709 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0695 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2571 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_0773 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_1547 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_3569 binding-protein-dependent transport systems inner membrane component K17319 lplB; putative aldouronate transport system permease protein
D Cphy_2570 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0665 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0861 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0340 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0394 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0486 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0696 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0930 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1120 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1716 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1917 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2655 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2731 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3208 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1710 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_0774 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_1548 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3241 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_3568 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2191 binding-protein-dependent transport systems inner membrane component K17320 lplC; putative aldouronate transport system permease protein
D Cphy_2243 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D Cphy_2241 Monosaccharide-transporting ATPase K10541 mglC; methyl-galactoside transport system permease protein
D Cphy_2242 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D Cphy_1584 periplasmic binding protein/LacI transcriptional regulator K10543 xylF; D-xylose transport system substrate-binding protein
D Cphy_1585 putative solute-binding component of ABC transporter K10546 chvE; putative multiple sugar transport system substrate-binding protein
D Cphy_1587 Monosaccharide-transporting ATPase K10547 gguB; putative multiple sugar transport system permease protein
D Cphy_1586 ABC transporter related K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_0583 putative sugar ABC transporter, substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein
D Cphy_0581 Monosaccharide-transporting ATPase K10560 rhaP; rhamnose transport system permease protein
D Cphy_0582 Monosaccharide-transporting ATPase K10561 rhaQ; rhamnose transport system permease protein
D Cphy_0580 ABC transporter related K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_2009 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2012 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2251 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1132 putative solute-binding component of ABC transporter K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_3277 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_1581 ABC-type sugar transport system periplasmic component-like protein K10439 rbsB; ribose transport system substrate-binding protein
D Cphy_2011 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_1133 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_3278 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D Cphy_2010 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_3280 ABC-type sugar transport system ATPase component-like protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_1134 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_3279 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Cphy_3402 extracellular solute-binding protein family 1 K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein
D Cphy_3401 binding-protein-dependent transport systems inner membrane component K25677 yesP; pectin-derived oligosaccharide transport system permease protein
D Cphy_3400 binding-protein-dependent transport systems inner membrane component K25678 yesQ; pectin-derived oligosaccharide transport system permease protein
D Cphy_0755 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_0764 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_3269 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_2034 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Cphy_3267 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_0757 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_0766 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_2036 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Cphy_3266 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0758 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0767 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_2037 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Cphy_0765 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_0756 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_3268 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_2035 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Cphy_1097 conserved hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D Cphy_1096 ABC transporter related K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D Cphy_0592 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_0291 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_1089 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_3027 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_1392 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_0529 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_0494 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_3317 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_2265 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Cphy_0527 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_0290 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_1090 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_1390 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_0593 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_2273 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_3316 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_3032 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Cphy_0289 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_1091 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_1015 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_0594 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_1391 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_0528 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_2267 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_3031 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_3315 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_2272 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Cphy_2052 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D Cphy_2053 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D Cphy_2054 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Cphy_1667 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_2834 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Cphy_1668 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Cphy_2833 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D Cphy_1669 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Cphy_2832 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D Cphy_2831 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1666 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1670 ABC transporter related K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Cphy_1448 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D Cphy_1450 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D Cphy_1451 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D Cphy_1449 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Cphy_0847 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Cphy_0848 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein
D Cphy_0849 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Cphy_3536 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_1257 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Cphy_3535 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_1258 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Cphy_3534 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_1259 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Cphy_3533 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_1260 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Cphy_3532 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1261 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Cphy_1233 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Cphy_1231 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Cphy_1230 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Cphy_2669 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Cphy_2672 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Cphy_2671 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D Cphy_2670 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Cphy_3108 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_2000 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Cphy_1996 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Cphy_1997 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3106 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Cphy_3105 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_1998 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Cphy_3104 ABC transporter related K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_1999 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Cphy_0431 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0812 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0805 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Cphy_0806 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0813 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_3107 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0432 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Cphy_0433 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0814 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0807 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Cphy_0808 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0815 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0434 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Cphy_0816 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Cphy_0809 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Cphy_2666 periplasmic binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein
D Cphy_0734 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D Cphy_0732 transport system permease protein K25283 yclO; iron-siderophore transport system permease protein
D Cphy_0731 transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D Cphy_0733 ABC transporter related K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D Cphy_2392 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Cphy_2393 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D Cphy_2394 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D Cphy_0560 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D Cphy_0561 transport system permease protein K25027 btuC; cobalamin transport system permease protein
D Cphy_0562 ABC transporter related K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Cphy_3491 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Cphy_0438 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Cphy_3489 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Cphy_0440 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Cphy_3490 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Cphy_0439 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Cphy_1386 Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D Cphy_1383 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Cphy_0691 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Cphy_1385 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Cphy_0681 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Cphy_1384 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Cphy_0692 ABC transporter related K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Cphy_3677 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Cphy_3635 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Cphy_3637 ABC transporter related K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Cphy_3636 ABC transporter related K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Cphy_3547 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Cphy_3546 ABC transporter related K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Cphy_0115 ABC-2 type transporter K09696 natB; sodium transport system permease protein
D Cphy_0114 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D Cphy_0078 ABC-2 type transporter K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D Cphy_1223 ABC-2 type transporter K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D Cphy_2898 hypothetical protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D Cphy_2899 hypothetical protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D Cphy_0077 ABC-2 type transporter K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D Cphy_1224 ABC-2 type transporter K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D Cphy_0076 ABC transporter related K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D Cphy_1225 ABC transporter related K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D Cphy_3884 ABC transporter related K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D Cphy_3331 protein of unknown function DUF214 K19084 braE; bacitracin transport system permease protein
D Cphy_3332 ABC transporter related K19083 braD; bacitracin transport system ATP-binding protein
D Cphy_1635 membrane protein, putative K25147 berB; beta-exotoxin I transport system permease protein
D Cphy_1634 ABC transporter related K25148 berA; beta-exotoxin I transport system ATP-binding protein
D Cphy_1835 putative ABC-2 type transport system permease protein K25149 narB; polyether ionophore transport system permease protein
D Cphy_1836 ABC transporter related K25150 narA; polyether ionophore transport system ATP-binding protein
D Cphy_2321 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein
D Cphy_2320 ABC transporter related K16921 ytrB; acetoin utilization transport system ATP-binding protein
D Cphy_3608 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Cphy_3609 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Cphy_2675 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Cphy_1130 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Cphy_3864 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Cphy_0980 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Cphy_3778 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Cphy_1129 ABC-type uncharacterized transport system permease component-like protein K25155 evrB; viologen exporter family transport system permease protein
D Cphy_3865 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein
D Cphy_3779 membrane protein, putative K25155 evrB; viologen exporter family transport system permease protein
D Cphy_2674 membrane protein, putative K25155 evrB; viologen exporter family transport system permease protein
D Cphy_0979 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein
D Cphy_3780 ABC transporter related K25156 evrA; viologen exporter family transport system ATP-binding protein
D Cphy_0978 ABC transporter related K25156 evrA; viologen exporter family transport system ATP-binding protein
D Cphy_3863 ABC transporter related K25156 evrA; viologen exporter family transport system ATP-binding protein
D Cphy_1128 ABC transporter related K25156 evrA; viologen exporter family transport system ATP-binding protein
D Cphy_2673 ABC transporter related K25156 evrA; viologen exporter family transport system ATP-binding protein
D Cphy_1058 ABC-type Na+ efflux pump permease component-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_3007 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_2063 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_3597 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_1469 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_0360 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_1006 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_1007 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_1290 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_2114 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_3905 transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_3576 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_3514 conserved hypothetical membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Cphy_1057 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1280 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_0186 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3904 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_2113 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3008 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1468 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_2234 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3599 response regulator receiver protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3515 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3577 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1005 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1083 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1289 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_2062 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3598 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_3926 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_0914 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_0359 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1984 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Cphy_1244 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1978 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1623 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_2079 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1362 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1444 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1857 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_2589 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_3633 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1027 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_0193 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_3702 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Cphy_1624 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_2590 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_1243 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_1977 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_2078 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_1445 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_1026 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_3705 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_1363 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Cphy_3013 ABC transporter related K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Cphy_3111 sodium/hydrogen exchanger K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
D Cphy_0883 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1252 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_2766 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_0381 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1067 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3019 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3276 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_2060 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1810 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_2404 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3173 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_2869 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3319 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3452 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_2460 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1724 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1593 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1318 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_1116 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3762 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Cphy_3689 major facilitator superfamily MFS_1 K08174 glcP; MFS transporter, FHS family, glucose/mannose:H+ symporter
D Cphy_3025 major facilitator superfamily MFS_1 K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D Cphy_1770 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Cphy_3906 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Cphy_1769 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_3549 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_2300 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Cphy_2762 sugar-specific permease EIIA 1 domain K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D Cphy_1768 PTS system, glucose subfamily, IIA subunit K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D Cphy_0263 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Cphy_1968 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D Cphy_2005 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Cphy_3375 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Cphy_3016 magnesium transporter K06213 mgtE; magnesium transporter
D Cphy_0682 Urea transporter K08717 utp; urea transporter
D Cphy_2706 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Cphy_2705 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Cphy_1958 Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter
D Cphy_0907 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Cphy_3015 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Cphy_1155 nucleic acid binding OB-fold tRNA/helicase-type K21449 ata; trimeric autotransporter adhesin
D Cphy_0706 LrgA family protein K06518 cidA; holin-like protein
D Cphy_2641 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM
D Cphy_2885 major facilitator superfamily MFS_1 K16211 malY; maltose/moltooligosaccharide transporter
D Cphy_0827 Spore germination protein K06296 gerKB; spore germination protein KB
D Cphy_0713 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Cphy_2870 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein
D Cphy_1952 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Cphy_1299 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Cphy_2104 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D Cphy_1028 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D Cphy_1066 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Cphy_0415 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein
D Cphy_1927 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein
D Cphy_0416 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Cphy_1928 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Cphy_0429 uracil-xanthine permease K02824 uraA; uracil permease
D Cphy_3346 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Cphy_1903 Chromate transporter K07240 chrA; chromate transporter
D Cphy_1904 Chromate transporter K07240 chrA; chromate transporter
D Cphy_2581 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family
D Cphy_2768 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D Cphy_2825 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D Cphy_2152 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1698 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_1697 arsenite-activated ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Cphy_2153 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Cphy_1816 anaerobic c4-dicarboxylate antiporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D Cphy_1820 anaerobic c4-dicarboxylate antiporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D Cphy_2607 virulence factor MVIN family protein K06409 spoVB; stage V sporulation protein B
D Cphy_2908 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B
D Cphy_3167 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D Cphy_3166 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D Cphy_0598 protein of unknown function DUF112 transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Cphy_0596 conserved hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein
D Cphy_0344 membrane protein-like protein K23675 fmnP; riboflavin transporter
D Cphy_0729 proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D Cphy_2279 conserved hypothetical protein K16788 niaX; niacin transporter
D Cphy_2474 cell cycle protein K03588 ftsW; cell division protein FtsW
D Cphy_1637 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein
D Cphy_1812 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Cphy_1925 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2434 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Cphy_2433 Oxaloacetate decarboxylase K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Cphy_2435 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Cphy_2436 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Cphy_1851 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Cphy_0831 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Cphy_0736 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Cphy_0899 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
D Cphy_1213 capsular exopolysaccharide family K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D Cphy_1192 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Cphy_1193 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Cphy_3525 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Cphy_3524 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Cphy_1194 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Cphy_0202 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:cpy02044]
D Cphy_0038 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_2819 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_0837 AAA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Cphy_0032 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Cphy_0033 Flp pilus assembly protein TadB-like protein K12510 tadB; tight adherence protein B
D Cphy_1953 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D Cphy_0189 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Cphy_1957 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Cphy_3555 beta-lactamase domain protein K02238 comEC; competence protein ComEC
D Cphy_1341 conserved hypothetical protein K02241 comFB; competence protein ComFB
D Cphy_2695 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Cphy_2696 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Cphy_2399 cytoplasmic domain of flagellar protein FhlB-like protein K04061 flhB2; flagellar biosynthesis protein
D Cphy_2717 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Cphy_2715 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Cphy_2714 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Cphy_2702 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Cphy_2700 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Cphy_2699 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Cphy_2698 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Cphy_2697 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Cphy_0256 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Cphy_0716 protein-export membrane protein, SecD/SecF family K12257 secDF; SecD/SecF fusion protein
D Cphy_3695 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Cphy_2867 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D Cphy_3647 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D Cphy_2409 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Cphy_2442 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Cphy_3437 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D Cphy_3943 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Cphy_0401 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA
D Cphy_0400 sec-independent translocation protein mttA/Hcf106 K03117 tatB; sec-independent protein translocase protein TatB
D Cphy_0402 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:cpy02042]
D Cphy_1475 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B
D Cphy_0907 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Cphy_3015 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Cphy_3776 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:cpy02022]
D Cphy_2826 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_2829 integral membrane sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Cphy_2827 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Cphy_1467 two component transcriptional regulator, winged helix family K07776 regX3; two-component system, OmpR family, response regulator RegX3
D Cphy_0742 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Cphy_0704 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Cphy_2855 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Cphy_1986 two component transcriptional regulator, winged helix family K07668 vicR; two-component system, OmpR family, response regulator VicR
D Cphy_3333 integral membrane sensor signal transduction histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3]
D Cphy_3334 two component transcriptional regulator, winged helix family K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR
D Cphy_1288 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_2854 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_1287 two component transcriptional regulator, winged helix family K18344 vanRB; two-component system, OmpR family, response regulator VanR
D Cphy_0964 integral membrane sensor signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_3518 two component transcriptional regulator, winged helix family K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Cphy_0016 integral membrane sensor signal transduction histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D Cphy_0015 two component transcriptional regulator, winged helix family K18941 arlR; two-component system, OmpR family, response regulator ArlR
D Cphy_1679 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Cphy_0196 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Cphy_1861 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Cphy_0511 PAS/PAC sensor signal transduction histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D Cphy_3937 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Cphy_2497 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Cphy_2938 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Cphy_2690 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Cphy_3528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2701 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2691 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Cphy_2843 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Cphy_3886 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0526 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1721 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2008 multi-sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3406 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3212 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0863 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1582 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0772 integral membrane sensor signal transduction histidine kinase K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_1393 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0578 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0617 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0495 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_0292 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3281 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3857 signal transduction histidine kinase, LytS K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2140 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_2252 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3033 histidine kinase internal region K07718 yesM; two-component system, sensor histidine kinase YesM [EC:2.7.13.3]
D Cphy_3211 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2141 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0771 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1583 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1722 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0864 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_1394 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0525 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0579 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0618 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0496 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0293 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3282 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3405 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3697 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3861 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3887 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2007 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2734 transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_2253 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_3034 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Cphy_0629 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:cpy02035]
D Cphy_2690 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Cphy_2689 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_0258 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Cphy_0151 CheC domain protein K03409 cheX; chemotaxis protein CheX
D Cphy_2688 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Cphy_2687 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Cphy_2448 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Cphy_2691 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Cphy_3528 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2701 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Cphy_2843 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Cphy_0201 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0382 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0285 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0436 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1639 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1172 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1520 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1053 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1474 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0604 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_0566 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_1976 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3094 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3206 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3450 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3454 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_3867 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Cphy_2715 hypothetical protein K02411 fliH; flagellar assembly protein FliH
D Cphy_2714 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Cphy_2713 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Cphy_2700 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Cphy_2699 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Cphy_2698 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Cphy_2697 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Cphy_2695 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Cphy_2696 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Cphy_2716 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Cphy_2703 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Cphy_2702 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Cphy_2717 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Cphy_2718 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Cphy_2711 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Cphy_2720 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Cphy_2719 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Cphy_2710 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Cphy_0243 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D Cphy_0244 protein of unknown function DUF1078 domain protein K02392 flgG; flagellar basal-body rod protein FlgG
D Cphy_0245 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D Cphy_2708 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE
D Cphy_0306 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Cphy_0305 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Cphy_0307 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Cphy_0316 FliB family protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D Cphy_3850 flagellin domain protein K02406 fliC; flagellin
D Cphy_0315 flagellin domain protein K02406 fliC; flagellin
D Cphy_0312 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Cphy_0313 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Cphy_3849 hypothetical protein K02422 fliS; flagellar secretion chaperone FliS
D Cphy_2685 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D Cphy_2706 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Cphy_2705 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Cphy_0308 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW
D Cphy_0303 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Cphy_0311 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D Cphy_2707 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD
D Cphy_2694 GTP-binding signal recognition particle SRP54 G-domain K02404 flhF; flagellar biosynthesis protein FlhF
D Cphy_2693 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D Cphy_0038 peptidase A24A prepilin type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_2819 peptidase A24A domain protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Cphy_0837 AAA ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Cphy_0032 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins [BR:cpy03037]
D Cphy_3111 sodium/hydrogen exchanger K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
C 04812 Cytoskeleton proteins [BR:cpy04812]
D Cphy_0242 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2375 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2471 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Cphy_2371 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Cphy_2370 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Cphy_2369 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Cphy_3935 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D Cphy_3934 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cpy04147]
D Cphy_3369 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Cphy_3001 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Cphy_2876 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2229 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Cphy_2875 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Cphy_0741 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_2900 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Cphy_0463 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D Cphy_1144 band 7 protein K07192 FLOT; flotillin
D Cphy_3289 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Cphy_2311 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Cphy_0419 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Cphy_3287 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Cphy_0238 translation elongation factor Tu K02358 tuf; elongation factor Tu
D Cphy_3726 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Cphy_1232 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_1117 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Cphy_3646 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Cphy_0547 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Cphy_3006 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Cphy_1931 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Cphy_1496 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D Cphy_2190 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_3023 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_3028 Alpha-L-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D Cphy_2237 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D Cphy_0041 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Cphy_0628 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_3374 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Cphy_1788 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Cphy_1372 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Cphy_1465 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_3382 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Cphy_0643 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Cphy_1543 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Cphy_2874 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Cphy_2651 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Cphy_3303 Phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:cpy02048]
D Cphy_0267 putative modification methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Cphy_2924 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cphy_0906 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Cphy_1273 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Cphy_2471 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Cphy_0242 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2375 cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D Cphy_2907 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2302 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_2179 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cphy_0181 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:cpy04090]
C 01504 Antimicrobial resistance genes [BR:cpy01504]
D Cphy_3617 Aminoglycoside N3'-acetyltransferase-like protein K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]
D Cphy_1822 GCN5-related N-acetyltransferase K18815 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D Cphy_2756 GCN5-related N-acetyltransferase K18816 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82]
D Cphy_2283 hypothetical protein K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D Cphy_1066 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Cphy_1823 small GTP-binding protein K18220 tetM; ribosomal protection tetracycline resistance protein
D Cphy_2221 radical SAM enzyme, Cfr family K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D Cphy_1598 ABC transporter related K18231 msr; macrolide transport system ATP-binding/permease protein
D Cphy_2220 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Cphy_2020 ABC transporter related K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D Cphy_2503 Chloramphenicol phosphotransferase family protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D Cphy_3626 Chloramphenicol 3-O-phosphotransferase-like protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D Cphy_2215 Chloramphenicol phosphotransferase family protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D Cphy_2068 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Cphy_2069 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2354 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_2324 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Cphy_1288 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_2854 integral membrane sensor signal transduction histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_1287 two component transcriptional regulator, winged helix family K18344 vanRB; two-component system, OmpR family, response regulator VanR
D Cphy_0964 integral membrane sensor signal transduction histidine kinase K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D Cphy_3518 two component transcriptional regulator, winged helix family K18349 vanRC; two-component system, OmpR family, response regulator VanR
D Cphy_0899 hypothetical protein K03585 acrA; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:cpy00536]
D Cphy_1694 Collagen triple helix repeat K06236 COL1A; collagen type I alpha
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cpy00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cpy03100]
D Cphy_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0028 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0068 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Cphy_R0109 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0073 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Cphy_R0018 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Cphy_R0030 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Cphy_R0034 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Cphy_R0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Cphy_R0019 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Cphy_R0098 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Cphy_R0042 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Cphy_R0031 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0059 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0060 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Cphy_R0078 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0075 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0105 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Cphy_R0041 tRNA-His K14226 tRNA-His; tRNA His
D Cphy_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Cphy_R0069 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Cphy_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0101 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0062 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Cphy_R0011 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0043 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0108 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0107 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Cphy_R0020 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0009 tRNA-Met K14230 tRNA-Met; tRNA Met
D Cphy_R0010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Cphy_R0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0083 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Cphy_R0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0056 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Cphy_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0032 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0082 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Cphy_R0094 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Cphy_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Cphy_R0008 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Cphy_R0035 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0049 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D Cphy_R0074 tRNA-OTHER K14237 tRNA-Val; tRNA Val
D Cphy_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0071 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0092 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0066 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0002 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0026 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Cphy_R0084 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0029 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0067 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0064 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0090 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0087 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Cphy_R0014 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0065 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0070 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0091 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Cphy_R0106 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Cphy_R0097 RNA component of RNaseP K01978 rnpB; M1 RNA
D Cphy_R0072 tmRNA as predicted by Rfam (RF00023), score 157.99 K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Cphy_0490 short-chain dehydrogenase/reductase SDR K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D Cphy_2534 short-chain dehydrogenase/reductase SDR K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D Cphy_2657 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Cphy_0060 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D Cphy_1517 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D Cphy_3088 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Cphy_3087 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Cphy_3052 Saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D Cphy_0988 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D Cphy_1502 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Cphy_1569 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Cphy_3803 conserved hypothetical protein K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D Cphy_3801 NADH dehydrogenase (ubiquinone) 24 kDa subunit K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3]
D Cphy_3804 NADH dehydrogenase (quinone) K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D Cphy_3805 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D Cphy_2056 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D Cphy_1845 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Cphy_1924 Desulfoferrodoxin ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2]
D Cphy_0987 Desulfoferrodoxin ferrous iron-binding region K05919 dfx; superoxide reductase [EC:1.15.1.2]
D Cphy_1570 Ferritin Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D Cphy_2935 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Cphy_2155 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Cphy_3048 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D Cphy_1175 glycyl-radical enzyme activating protein family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Cphy_2820 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Cphy_3894 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Cphy_3427 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Cphy_1418 glycyl-radical enzyme activating protein family K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D Cphy_0366 putative RNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D Cphy_3168 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D Cphy_1912 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Cphy_2223 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D Cphy_0142 GCN5-related N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D Cphy_0577 conserved hypothetical protein K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
D Cphy_3030 conserved hypothetical protein K15533 K15533; 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase [EC:2.4.1.211]
D Cphy_1920 conserved hypothetical protein K15534 K15534; beta-D-galactosyl-(1->4)-L-rhamnose phosphorylase [EC:2.4.1.247]
D Cphy_1874 Kojibiose phosphorylase K18783 E2.4.1.279; nigerose phosphorylase [EC:2.4.1.279]
D Cphy_3313 Kojibiose phosphorylase K18783 E2.4.1.279; nigerose phosphorylase [EC:2.4.1.279]
D Cphy_1019 Kojibiose phosphorylase K18784 E2.4.1.282; 3-O-alpha-D-glucosyl-L-rhamnose phosphorylase [EC:2.4.1.282]
D Cphy_2264 glycosidase PH1107-related K18785 mp2; beta-1,4-mannooligosaccharide/beta-1,4-mannosyl-N-acetylglucosamine phosphorylase [EC:2.4.1.319 2.4.1.320]
D Cphy_1718 glycosidase PH1107-related K18785 mp2; beta-1,4-mannooligosaccharide/beta-1,4-mannosyl-N-acetylglucosamine phosphorylase [EC:2.4.1.319 2.4.1.320]
D Cphy_0694 conserved hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D Cphy_2481 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Cphy_0062 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Cphy_3036 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Cphy_2891 Dak phosphatase K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D Cphy_3148 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D Cphy_3551 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D Cphy_0997 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D Cphy_0477 putative anti-sigma regulatory factor, serine/threonine protein kinase K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D Cphy_0328 HPr kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Cphy_3462 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D Cphy_3285 hypothetical protein K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D Cphy_2658 protein of unknown function DUF303 acetylesterase putative K05970 SIAE; sialate O-acetylesterase [EC:3.1.1.53]
D Cphy_0626 hypothetical protein K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D Cphy_0625 putative esterase K03930 estA; putative tributyrin esterase [EC:3.1.1.-]
D Cphy_2999 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Cphy_0138 protein serine/threonine phosphatase K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D Cphy_1212 Protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Cphy_3436 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Cphy_2533 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D Cphy_3758 phosphoesterase RecJ domain protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D Cphy_2610 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D Cphy_0512 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Cphy_3900 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Cphy_0624 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Cphy_3010 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Cphy_2105 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Cphy_2108 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Cphy_1510 Endo-1,4-beta-xylanase K01181 E3.2.1.8; endo-1,4-beta-xylanase [EC:3.2.1.8]
D Cphy_3586 Arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D Cphy_3158 Alpha-glucuronidase K01235 aguA; alpha-glucuronidase [EC:3.2.1.139]
D Cphy_3207 glycoside hydrolase family 8 K15531 rexA; oligosaccharide reducing-end xylanase [EC:3.2.1.156]
D Cphy_1919 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Cphy_0203 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Cphy_1750 glycosyl hydrolase family 88 K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
D Cphy_0218 glycoside hydrolase family 31 K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D Cphy_0288 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Cphy_3029 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Cphy_0776 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Cphy_0934 glycosyl hydrolase family 88 K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D Cphy_1501 N-acyl-D-glutamate deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Cphy_2492 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Cphy_3069 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_0538 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_1687 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_0601 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_0405 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_0110 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Cphy_1847 polysaccharide deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D Cphy_1493 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Cphy_2043 Endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Cphy_0880 NUDIX hydrolase K12944 nudI; nucleoside triphosphatase [EC:3.6.1.-]
D Cphy_3366 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Cphy_3709 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Cphy_3810 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Cphy_3746 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D Cphy_1777 conserved hypothetical protein K03716 splB; spore photoproduct lyase [EC:4.1.99.14]
D Cphy_1592 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D Cphy_0175 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D Cphy_0904 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Cphy_0932 polysaccharide lyase family 8 K19049 cslA; chondroitin AC lyase [EC:4.2.2.5]
D Cphy_0489 Heparinase II/III family protein K20525 alg17C; oligo-alginate lyase [EC:4.2.2.26]
D Cphy_1499 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D Cphy_1417 Formate C-acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D Cphy_2262 N-acylglucosamine 2-epimerase K16213 cbe; cellobiose epimerase [EC:5.1.3.11]
D Cphy_3153 RbsD or FucU transport K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D Cphy_1149 L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D Cphy_0212 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Cphy_0211 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Cphy_0216 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Cphy_3688 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Cphy_2132 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Cphy_0632 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Cphy_1802 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Cphy_2998 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Cphy_0121 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Cphy_0543 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D Cphy_1804 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D Cphy_1566 ATPase, P-type (transporting), HAD superfamily, subfamily IC K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
D Cphy_0677 ATPase, P-type (transporting), HAD superfamily, subfamily IC K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D Cphy_0333 Phosphotransferase system, phosphocarrier protein HPr K11184 chr; catabolite repression HPr-like protein
D Cphy_3005 CBS domain containing protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D Cphy_1553 4Fe-4S ferredoxin iron-sulfur binding domain protein K05337 fer; ferredoxin
D Cphy_0213 FMN-binding domain protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Cphy_0214 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Cphy_0215 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Cphy_2906 FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Cphy_1730 NADH dehydrogenase (quinone) K14086 echA; ech hydrogenase subunit A
D Cphy_1731 respiratory-chain NADH dehydrogenase subunit 1 K14087 echB; ech hydrogenase subunit B
D Cphy_1732 NADH ubiquinone oxidoreductase 20 kDa subunit K14088 echC; ech hydrogenase subunit C
D Cphy_1733 Ech hydrogenase, subunit EchD, putative K14089 echD; ech hydrogenase subunit D
D Cphy_1734 NADH-ubiquinone oxidoreductase chain 49kDa K14090 echE; ech hydrogenase subunit E
D Cphy_1735 4Fe-4S ferredoxin iron-sulfur binding domain protein K14091 echF; ech hydrogenase subunit F
D Cphy_1675 4Fe-4S ferredoxin iron-sulfur binding domain protein K02574 napH; ferredoxin-type protein NapH
D Cphy_0198 4Fe-4S ferredoxin iron-sulfur binding domain protein K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
D Cphy_2554 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D Cphy_3161 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Cphy_2635 Ethanolamine utilisation protein EutH K04023 eutH; ethanolamine transporter
D Cphy_1423 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D Cphy_2644 microcompartments protein K04026 eutL; ethanolamine utilization protein EutL
D Cphy_2648 ethanolamine utilization protein, EutP K04029 eutP; ethanolamine utilization protein EutP
D Cphy_1420 GTP-binding protein, EutP/PduV family K04029 eutP; ethanolamine utilization protein EutP
D Cphy_2634 Ethanolamine utilisation EutQ family protein K04030 eutQ; ethanolamine utilization protein EutQ
D Cphy_1426 Ethanolamine utilisation EutQ family protein K04030 eutQ; ethanolamine utilization protein EutQ
D Cphy_2649 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS
D Cphy_1176 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS
D Cphy_1419 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS
D Cphy_2362 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D Cphy_1959 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D Cphy_3512 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase
D Cphy_3295 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D Cphy_1185 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
D Cphy_1114 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Cphy_0555 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Cphy_0644 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Cphy_1938 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Cphy_1162 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Cphy_2863 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D Cphy_0338 RNA binding S1 domain protein K06959 tex; protein Tex
D Cphy_2880 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A
C 99974 Translation
C 99975 Protein processing
D Cphy_3463 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator
D Cphy_0376 trigger factor K03545 tig; trigger factor
D Cphy_0750 peptidylprolyl isomerase FKBP-type K03545 tig; trigger factor
D Cphy_0204 peptidylprolyl isomerase FKBP-type K03545 tig; trigger factor
D Cphy_0284 peptidylprolyl isomerase FKBP-type K03545 tig; trigger factor
D Cphy_2207 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)-like protein K03545 tig; trigger factor
D Cphy_0686 UreE urease accessory domain protein K03187 ureE; urease accessory protein
D Cphy_0685 Urease accessory protein UreF K03188 ureF; urease accessory protein
D Cphy_0684 urease accessory protein UreG K03189 ureG; urease accessory protein
D Cphy_0683 Urease accessory protein UreD K03190 ureD; urease accessory protein
D Cphy_2865 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Cphy_1739 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D Cphy_1740 hydrogenase formation HypD protein K04654 hypD; hydrogenase expression/formation protein HypD
D Cphy_1741 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Cphy_0148 AIR synthase related protein domain protein K04655 hypE; hydrogenase expression/formation protein HypE
D Cphy_1738 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Cphy_2724 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D Cphy_1488 conserved hypothetical protein K07402 xdhC; xanthine dehydrogenase accessory factor
D Cphy_1485 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor
D Cphy_3752 Negative regulator of genetic competence sporulation and motility-like protein K16511 mecA1_2; adapter protein MecA 1/2
D Cphy_0564 Negative regulator of genetic competence sporulation and motility-like protein K16511 mecA1_2; adapter protein MecA 1/2
C 99976 Replication and repair
D Cphy_0129 methylated-DNA--protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D Cphy_2376 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Cphy_0170 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Cphy_2398 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Cphy_2723 DNA protecting protein DprA K04096 smf; DNA processing protein
D Cphy_0502 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D Cphy_2984 Superfamily II helicase and inactivated derivatives-like protein K06919 K06919; putative DNA primase/helicase
D Cphy_1803 transposase K07482 K07482; transposase, IS30 family
D Cphy_2597 transposase K07482 K07482; transposase, IS30 family
D Cphy_2728 transposase K07482 K07482; transposase, IS30 family
D Cphy_2203 transposase ISLasa14, IS3 family K07483 K07483; transposase
D Cphy_3216 transposase IS3/IS911 family protein K07483 K07483; transposase
D Cphy_3176 transposase IS3/IS911 family protein K07483 K07483; transposase
D Cphy_2173 transposase IS3/IS911 family protein K07483 K07483; transposase
D Cphy_1314 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_0918 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_1438 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_0565 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_0608 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_0649 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_3286 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_3433 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_3856 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_2445 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_2328 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase
D Cphy_0468 transposase, IS605 OrfB family K07496 K07496; putative transposase
D Cphy_3922 transposase, IS605 OrfB family K07496 K07496; putative transposase
D Cphy_3084 transposase, IS605 OrfB family K07496 K07496; putative transposase
D Cphy_3214 hypothetical protein K07497 K07497; putative transposase
D Cphy_3215 integrase, catalytic region K07497 K07497; putative transposase
D Cphy_3175 Integrase catalytic region K07497 K07497; putative transposase
D Cphy_2172 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Cphy_3672 phage shock protein A, PspA K03969 pspA; phage shock protein A
D Cphy_0737 Rhodanese domain protein K03972 pspE; phage shock protein E
D Cphy_1869 Rhodanese domain protein K03972 pspE; phage shock protein E
D Cphy_0047 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Cphy_0128 amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D Cphy_3090 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Cphy_1758 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Cphy_0373 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
C 99978 Cell growth
D Cphy_3942 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein
D Cphy_3908 spore maturation protein K06373 spmA; spore maturation protein A
D Cphy_3907 nucleoside recognition domain protein K06374 spmB; spore maturation protein B
D Cphy_0476 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D Cphy_2594 protein of unknown function DUF95 transmembrane K06384 spoIIM; stage II sporulation protein M
D Cphy_2316 Stage II sporulation P family protein K06385 spoIIP; stage II sporulation protein P
D Cphy_3792 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D Cphy_2524 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D Cphy_2523 hypothetical protein K06391 spoIIIAB; stage III sporulation protein AB
D Cphy_2522 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D Cphy_2521 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D Cphy_2520 sporulation stage III, protein AE K06394 spoIIIAE; stage III sporulation protein AE
D Cphy_2519 hypothetical protein K06395 spoIIIAF; stage III sporulation protein AF
D Cphy_2518 hypothetical protein K06396 spoIIIAG; stage III sporulation protein AG
D Cphy_2517 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH
D Cphy_2385 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D Cphy_2997 Resolvase domain K06400 spoIVCA; site-specific DNA recombinase
D Cphy_0479 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D Cphy_0480 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D Cphy_0481 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D Cphy_0751 GerA spore germination protein K06408 spoVAF; stage V sporulation protein AF
D Cphy_1249 dipicolinate synthase, A chain K06410 spoVFA; dipicolinate synthase subunit A
D Cphy_1248 dipicolinic acid synthetase, B subunit K06411 spoVFB; dipicolinate synthase subunit B
D Cphy_0109 SpoVG family protein K06412 spoVG; stage V sporulation protein G
D Cphy_0374 small acid-soluble spore protein alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP)
D Cphy_1320 small acid-soluble spore protein alpha/beta type K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D Cphy_2612 putative stage IV sporulation YqfD K06438 yqfD; similar to stage IV sporulation protein
D Cphy_0829 GerA spore germination protein K06295 gerKA; spore germination protein KA
D Cphy_0828 hypothetical protein K06297 gerKC; spore germination protein KC
D Cphy_1956 hypothetical protein K06298 gerM; germination protein M
C 99993 Cell motility
C 99995 Signaling proteins
D Cphy_3484 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Cphy_2798 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D Cphy_2611 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D Cphy_1186 microcompartments protein K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D Cphy_1671 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Cphy_2830 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Cphy_2440 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D Cphy_2183 CutC family protein K06201 cutC; copper homeostasis protein
D Cphy_1653 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D Cphy_1895 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D Cphy_0180 protein of unknown function DUF1648 K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Cphy_0885 Competence protein-like protein K06198 coiA; competence protein CoiA
D Cphy_0627 PHP domain protein K04477 ycdX; putative hydrolase
D Cphy_0063 PHP domain protein K04477 ycdX; putative hydrolase
D Cphy_2182 Patatin K07001 K07001; NTE family protein
D Cphy_0420 Patatin K07001 K07001; NTE family protein
D Cphy_1551 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily
D Cphy_3301 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Cphy_3478 ribonuclease BN K07058 K07058; membrane protein
D Cphy_2678 ribonuclease BN K07058 K07058; membrane protein
D Cphy_3178 conserved hypothetical protein K04750 phnB; PhnB protein
D Cphy_1217 hypothetical protein K04750 phnB; PhnB protein
D Cphy_3235 3-demethylubiquinone-9 3-methyltransferase K04750 phnB; PhnB protein
D Cphy_0609 conserved hypothetical protein K01421 yhgE; putative membrane protein
D Cphy_1908 membrane protein-like protein K01421 yhgE; putative membrane protein
D Cphy_2421 membrane protein K08972 K08972; putative membrane protein
D Cphy_3492 protein of unknown function DUF368 K08974 K08974; putative membrane protein
D Cphy_0717 protein of unknown function DUF368 K08974 K08974; putative membrane protein
D Cphy_2882 putative GTPase (G3E family)-like protein K08986 ycgQ; putative membrane protein
C 99997 Function unknown
D Cphy_2677 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Cphy_0871 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Cphy_0935 HD superfamily phosphohydrolase-like protein K06885 K06885; uncharacterized protein
D Cphy_3820 PGAP1 family protein K06889 K06889; uncharacterized protein
D Cphy_1306 conserved hypothetical protein K06889 K06889; uncharacterized protein
D Cphy_2225 alpha/beta superfamily hydrolase K06889 K06889; uncharacterized protein
D Cphy_0072 hypothetical protein K06889 K06889; uncharacterized protein
D Cphy_1988 conserved hypothetical protein K06889 K06889; uncharacterized protein
D Cphy_1275 protein of unknown function DUF815 K06923 K06923; uncharacterized protein
D Cphy_3018 protein of unknown function DUF134 K06933 K06933; uncharacterized protein
D Cphy_0700 protein of unknown function DUF296 K06934 K06934; uncharacterized protein
D Cphy_0177 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Cphy_1396 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D Cphy_2407 RNA binding protein K06960 K06960; uncharacterized protein
D Cphy_2490 peptidase membrane zinc metallopeptidase putative K06973 K06973; uncharacterized protein
D Cphy_0163 GCN5-related N-acetyltransferase K06975 K06975; uncharacterized protein
D Cphy_3354 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D Cphy_3353 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D Cphy_1909 conserved hypothetical protein K07003 K07003; uncharacterized protein
D Cphy_1296 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07005 K07005; uncharacterized protein
D Cphy_0720 flavin-nucleotide-binding protein-like protein K07005 K07005; uncharacterized protein
D Cphy_3868 5-Nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D Cphy_1603 4-vinyl reductase 4VR K07013 K07013; uncharacterized protein
D Cphy_0364 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein
D Cphy_3731 phosphotransferase system, EIIC K07035 K07035; uncharacterized protein
D Cphy_3061 aldo/keto reductase K07079 K07079; uncharacterized protein
D Cphy_1630 aldo/keto reductase K07079 K07079; uncharacterized protein
D Cphy_1658 aldo/keto reductase K07079 K07079; uncharacterized protein
D Cphy_1050 aldo/keto reductase K07079 K07079; uncharacterized protein
D Cphy_0370 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Cphy_2256 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Cphy_3732 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Cphy_1064 metallophosphoesterase K07098 K07098; uncharacterized protein
D Cphy_2087 metallophosphoesterase K07098 K07098; uncharacterized protein
D Cphy_2586 metallophosphoesterase K07098 K07098; uncharacterized protein
D Cphy_3730 Helix-turn-helix type 11 domain protein K07105 K07105; uncharacterized protein
D Cphy_1793 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D Cphy_2355 ATPase (AAA+ superfamily)-like protein K07133 K07133; uncharacterized protein
D Cphy_3453 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D Cphy_2604 oxidoreductase, FAD-binding K07137 K07137; uncharacterized protein
D Cphy_0408 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein
D Cphy_1760 membrane spanning protein K07149 K07149; uncharacterized protein
D Cphy_0727 protein of unknown function DUF161 K07149 K07149; uncharacterized protein
D Cphy_3944 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Cphy_2333 GatB/YqeY domain protein K09117 K09117; uncharacterized protein
D Cphy_1843 protein of unknown function DUF402 K09145 K09145; uncharacterized protein
D Cphy_2797 protein of unknown function DUF711 K09157 K09157; uncharacterized protein
D Cphy_2828 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein
D Cphy_1434 protein of unknown function DUF1349 K09702 K09702; uncharacterized protein
D Cphy_1441 protein of unknown function DUF1349 K09702 K09702; uncharacterized protein
D Cphy_1719 conserved hypothetical protein K09704 K09704; uncharacterized protein
D Cphy_1672 protein of unknown function DUF985 K09705 K09705; uncharacterized protein
D Cphy_1511 conserved hypothetical protein K09707 K09707; uncharacterized protein
D Cphy_2684 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Cphy_0473 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Cphy_1545 protein of unknown function DUF503 K09764 K09764; uncharacterized protein
D Cphy_3293 conserved hypothetical protein K09766 K09766; uncharacterized protein
D Cphy_3042 protein of unknown function DUF188 K09768 K09768; uncharacterized protein
D Cphy_3914 protein of unknown function DUF327 K09770 K09770; uncharacterized protein
D Cphy_2364 protein of unknown function DUF378 K09779 K09779; uncharacterized protein
D Cphy_2410 putative helix-turn-helix protein YlxM/p13 family protein K09787 K09787; uncharacterized protein
D Cphy_0250 RNA binding S1 domain protein K00243 K00243; uncharacterized protein
D Cphy_1568 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D Cphy_1866 conserved hypothetical protein K09927 K09927; uncharacterized protein
D Cphy_0591 protein of unknown function DUF1680 K09955 K09955; uncharacterized protein
D Cphy_2904 protein of unknown function DUF925 K09962 K09962; uncharacterized protein
D Cphy_0465 conserved hypothetical protein K09992 K09992; uncharacterized protein
D Cphy_3004 conserved hypothetical protein K01163 K01163; uncharacterized protein
D Cphy_1330 exonuclease-like protein K07502 yprB; uncharacterized protein
D Cphy_2550 protein of unknown function DUF464 K07584 ysxB; uncharacterized protein
D Cphy_2776 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 19, 2024