+F Repair protein KO #

  DNA Repair and Recombination Proteins - Culex quinquefasciatus (southern house mosquito)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CpipJ_CPIJ006748 activating signal cointegrator 1 complex subunit 3 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4] D CpipJ_CPIJ003975 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CpipJ_CPIJ002767 single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E CpipJ_CPIJ007194 N-glycosylase/DNA lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E CpipJ_CPIJ016010 endonuclease iii K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CpipJ_CPIJ004000 endonuclease iii K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CpipJ_CPIJ012006 conserved hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F CpipJ_CPIJ018287 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F CpipJ_CPIJ010026 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2 F CpipJ_CPIJ012084 conserved hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3 E DNA polymerase epsilon complex F CpipJ_CPIJ008666 DNA polymerase epsilon K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F CpipJ_CPIJ008667 DNA polymerase epsilon subunit 2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F CpipJ_CPIJ016568 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7] F CpipJ_CPIJ020000 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7] F CpipJ_CPIJ010897 DNA polymerase epsilon subunit 4 K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7] E CpipJ_CPIJ009046 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D Short Patch-BER factors E CpipJ_CPIJ012852 conserved hypothetical protein K10803 XRCC1; DNA-repair protein XRCC1 E CpipJ_CPIJ011204 DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1 E CpipJ_CPIJ020141 conserved hypothetical protein K10803 XRCC1; DNA-repair protein XRCC1 E CpipJ_CPIJ003295 conserved hypothetical protein K10803 XRCC1; DNA-repair protein XRCC1 D Other BER factors E CpipJ_CPIJ006211 tyrosyl-dna phosphodiesterase K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-] E CpipJ_CPIJ001673 aprataxin K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] E CpipJ_CPIJ001675 FHA-HIT K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] E CpipJ_CPIJ008308 conserved hypothetical protein K13295 APLF; aprataxin and PNK-like factor [EC:3.1.-.-] E CpipJ_CPIJ010996 polynucleotide kinase- 3'-phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] E CpipJ_CPIJ017855 polynucleotide kinase- 3'-phosphatase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] E CpipJ_CPIJ014043 conserved hypothetical protein K10802 HMGB1; high mobility group protein B1 E CpipJ_CPIJ012304 poly K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F CpipJ_CPIJ015737 DNA repair protein xp-c / rad4 K10838 XPC; xeroderma pigmentosum group C-complementing protein F CpipJ_CPIJ003593 DNA repair protein xp-c / rad4 K10838 XPC; xeroderma pigmentosum group C-complementing protein F CpipJ_CPIJ003591 DNA repair protein xp-c / rad4 K10838 XPC; xeroderma pigmentosum group C-complementing protein F CpipJ_CPIJ003592 DNA-repair protein complementing XP-C cells K10838 XPC; xeroderma pigmentosum group C-complementing protein E Cul4-DDB2 complex F CpipJ_CPIJ012886 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F CpipJ_CPIJ010574 cullin K10609 CUL4; cullin 4 F CpipJ_CPIJ013742 conserved hypothetical protein K10610 DDB1; DNA damage-binding protein 1 E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F CpipJ_CPIJ016666 DNA-directed RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F CpipJ_CPIJ007655 DNA-directed RNA polymerase II 140 kDa polypeptide K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F CpipJ_CPIJ006734 DNA-directed RNA polymerase II 16 kDa polypeptide K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F CpipJ_CPIJ015285 DNA-directed RNA polymerase II 23 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F CpipJ_CPIJ018444 DNA-directed RNA polymeraseI K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F CpipJ_CPIJ001219 DNA-directed RNA polymerase II 19 kDa polypeptide K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F CpipJ_CPIJ005206 DNA-directed RNA polymeraseI K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F CpipJ_CPIJ018569 DNA-directed RNA polymeraseI K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F CpipJ_CPIJ001855 DNA-directed RNA polymerase II 15.1 kDa polypeptide K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F CpipJ_CPIJ005859 DNA-directed RNA polymerase II 7.6 kDa polypeptide K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F CpipJ_CPIJ005304 DNA-directed RNA polymerase II subunit J K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 F CpipJ_CPIJ002930 RNA polymerase small Zn-binding subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 E Cul4-CSA complex F CpipJ_CPIJ012886 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] F CpipJ_CPIJ010574 cullin K10609 CUL4; cullin 4 F CpipJ_CPIJ013742 conserved hypothetical protein K10610 DDB1; DNA damage-binding protein 1 E Other TCR factor F CpipJ_CPIJ005770 conserved hypothetical protein K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E CpipJ_CPIJ006481 TFIIH basal transcription factor complex helicase XPB subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E CpipJ_CPIJ016774 TFIIH basal transcription factor complex helicase XPB subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E CpipJ_CPIJ018703 TFIIH basal transcription factor complex helicase subunit K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E CpipJ_CPIJ015824 TFIIH basal transcription factor complex subunit 1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 E CpipJ_CPIJ004242 TFIIH basal transcription factor complex p44 subunit K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E CpipJ_CPIJ004241 btf K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E CpipJ_CPIJ000358 TFIIH basal transcription factor complex p34 subunit K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E CpipJ_CPIJ005256 TFIIH basal transcription factor complex p52 subunit K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E CpipJ_CPIJ014629 conserved hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E CpipJ_CPIJ018296 cak1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E CpipJ_CPIJ004855 cyclin-H K06634 CCNH; cyclin H E CpipJ_CPIJ001565 CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E CpipJ_CPIJ002381 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1 E CpipJ_CPIJ006691 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ006417 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ003130 replication factor A, 14kD-subunit K10740 RPA3; replication factor A3 D Other NER factors E CpipJ_CPIJ006890 DNA-repair protein complementing XP-A cells K10847 XPA; DNA-repair protein complementing XP-A cells E CpipJ_CPIJ013903 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1 E CpipJ_CPIJ004313 mei-9 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E CpipJ_CPIJ004184 DNA-repair protein complementing XP-G cells K10846 ERCC5; DNA excision repair protein ERCC-5 E CpipJ_CPIJ007476 DNA repair/transcription protein met18/mms19 K15075 MET18; DNA repair/transcription protein MET18/MMS19 E CpipJ_CPIJ011310 cullin-3 K03869 CUL3; cullin 3 E CpipJ_CPIJ018129 conserved hypothetical protein K03872 ELOC; elongin-C E CpipJ_CPIJ002389 transcription elongation factor B polypeptide 2 K03873 ELOB; elongin-B E CpipJ_CPIJ003427 transcription elongation factor B polypeptide 3 K15076 ELOA; elongin-A E CpipJ_CPIJ009239 lingerer K26545 UBAP2; ubiquitin-associated protein 2 C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CpipJ_CPIJ017719 DNA mismatch repair protein spellchecker 1 K08735 MSH2; DNA mismatch repair protein MSH2 E CpipJ_CPIJ013201 DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E CpipJ_CPIJ016932 DNA mismatch repair protein pms1 K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E CpipJ_CPIJ018287 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E CpipJ_CPIJ010026 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2 E CpipJ_CPIJ012084 conserved hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3 D RPA (replication factor A) E CpipJ_CPIJ002381 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1 E CpipJ_CPIJ006691 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ006417 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ003130 replication factor A, 14kD-subunit K10740 RPA3; replication factor A3 D RFC (replication factor C) E CpipJ_CPIJ017892 replication factor C large subunit K10754 RFC1; replication factor C subunit 1 E CpipJ_CPIJ001399 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 E CpipJ_CPIJ000302 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 E CpipJ_CPIJ001914 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 E CpipJ_CPIJ000126 replication factor C 38kD subunit K10756 RFC3_5; replication factor C subunit 3/5 E CpipJ_CPIJ014481 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E CpipJ_CPIJ009046 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen E CpipJ_CPIJ001671 exonuclease K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E CpipJ_CPIJ014043 conserved hypothetical protein K10802 HMGB1; high mobility group protein B1 B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E CpipJ_CPIJ004537 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ018249 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ004115 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] E CpipJ_CPIJ016385 conserved hypothetical protein K10867 NBN; nibrin D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex E CpipJ_CPIJ010004 DNA topoisomerase 2-binding protein 1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 D BRCA1-C complex E CpipJ_CPIJ004537 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ018249 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ004115 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] E CpipJ_CPIJ016385 conserved hypothetical protein K10867 NBN; nibrin D BRCA complex E CpipJ_CPIJ012893 conserved hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein E CpipJ_CPIJ003679 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E CpipJ_CPIJ003679 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 E CpipJ_CPIJ018012 RAD51C protein K10870 RAD51L2; RAD51-like protein 2 E CpipJ_CPIJ001341 RAD51C protein K10870 RAD51L2; RAD51-like protein 2 E CpipJ_CPIJ019716 RAD51D K10871 RAD51L3; RAD51-like protein 3 E CpipJ_CPIJ007835 conserved hypothetical protein K10879 XRCC2; DNA-repair protein XRCC2 E CpipJ_CPIJ008008 DNA-repair protein XRCC3 K10880 XRCC3; DNA-repair protein XRCC3 D Rad52 family proteins D Rad54 family proteins E CpipJ_CPIJ006602 DNA repair and recombination protein RAD54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] E CpipJ_CPIJ000196 steroid receptor-interacting snf2 domain protein K10876 RAD54L2; RAD54-like protein 2 [EC:5.6.2.-] E CpipJ_CPIJ002331 DNA repair and recombination protein RAD54 K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-] E CpipJ_CPIJ011830 serine protease K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-] D RecQ family DNA helicases E CpipJ_CPIJ017275 ATP-dependent DNA helicase Q1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4] E CpipJ_CPIJ007658 werner syndrome helicase K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4] E CpipJ_CPIJ007633 ATP-dependent DNA helicase hus2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E CpipJ_CPIJ007409 rothmund-thomson syndrome DNA helicase recq4 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4] E CpipJ_CPIJ018413 rothmund-thomson syndrome DNA helicase recq4 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4] E CpipJ_CPIJ006071 ATP-dependent DNA helicase recQ K10902 RECQL5; ATP-dependent DNA helicase Q5 [EC:5.6.2.4] D Bloom's syndrome complex (BTR) E CpipJ_CPIJ007633 ATP-dependent DNA helicase hus2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E CpipJ_CPIJ006288 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E CpipJ_CPIJ009756 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E CpipJ_CPIJ004237 conserved hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1 E CpipJ_CPIJ019872 conserved hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1 D RPA (replication factor A) E CpipJ_CPIJ002381 replication protein A 70 kDa DNA-binding subunit K07466 RFA1; replication factor A1 E CpipJ_CPIJ006691 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ006417 insect replication protein a K10739 RFA2; replication factor A2 E CpipJ_CPIJ003130 replication factor A, 14kD-subunit K10740 RPA3; replication factor A3 D Protein phosphatase 4 E CpipJ_CPIJ001371 serine/threonine-protein phosphatase 4 catalytic subunit K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] E CpipJ_CPIJ012238 phosphatase 4 K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1 E CpipJ_CPIJ009977 phosphatase 4 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2 E CpipJ_CPIJ006330 conserved hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3 D AP-5 complex D SMC5-SMC6 complex E CpipJ_CPIJ012279 structural maintenance of chromosomes 5 smc5 K22803 SMC5; structural maintenance of chromosomes protein 5 E CpipJ_CPIJ007521 structural maintenance of chromosomes protein 6 K22804 SMC6; structural maintenance of chromosomes protein 6 E CpipJ_CPIJ008829 conserved hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27] E CpipJ_CPIJ014824 conserved hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27] E CpipJ_CPIJ009304 quijote K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] E CpipJ_CPIJ003760 melanoma-associated antigen D2 K22823 NSMCE3; non-structural maintenance of chromosomes element 3 E CpipJ_CPIJ010177 DNA repair protein Rad62 K22825 NSMCE4; non-structural maintenance of chromosomes element 4 D Other HR factors E CpipJ_CPIJ003895 conserved hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-] E CpipJ_CPIJ010267 3'-5' exonuclease K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1] E CpipJ_CPIJ010215 3'-5' exonuclease K20777 EXD2; exonuclease 3'-5' domain-containing protein 2 [EC:3.1.11.1] E CpipJ_CPIJ020282 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E CpipJ_CPIJ000871 crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] E CpipJ_CPIJ010440 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1 E CpipJ_CPIJ017675 predicted protein K10991 SWI5; DNA repair protein Swi5/Sae3 E CpipJ_CPIJ013689 conserved hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-] E CpipJ_CPIJ007466 conserved hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-] E CpipJ_CPIJ014801 conserved hypothetical protein K19026 SPG11; spatacsin E CpipJ_CPIJ001881 conserved hypothetical protein K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26 E CpipJ_CPIJ013367 MRG15 K11339 MORF4L1; mortality factor 4-like protein 1 E CpipJ_CPIJ000309 sam/hd domain protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] E CpipJ_CPIJ017879 fidgetin K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E CpipJ_CPIJ000471 fidgetin K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E CpipJ_CPIJ008318 conserved hypothetical protein K23112 BRAT1; BRCA1-associated ATM activator 1 E CpipJ_CPIJ016806 leucine rich repeat protein K23456 CFAP410; cilla- and flagella-associated protein E CpipJ_CPIJ016894 conserved hypothetical protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7 E CpipJ_CPIJ006612 conserved hypothetical protein K25790 EMSY; BRCA2-interacting transcriptional repressor EMSY E CpipJ_CPIJ006143 conserved hypothetical protein K25791 HSF2BP; heat shock factor 2-binding protein E CpipJ_CPIJ002185 conserved hypothetical protein K26125 MMS22L; protein MMS22-like E CpipJ_CPIJ000307 conserved hypothetical protein K09257 NFKBIL2; NF-kappa-B inhibitor-like protein 2 E CpipJ_CPIJ006314 conserved hypothetical protein K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-] C NHEJ (non-homologous end-joining) D DNA-PK complex E CpipJ_CPIJ002893 conserved hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1 E CpipJ_CPIJ011452 ku P80 DNA helicase K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2 E CpipJ_CPIJ007259 conserved hypothetical protein K06642 PRKDC; DNA-dependent protein kinase catalytic subunit [EC:2.7.11.1] D MRX complex E CpipJ_CPIJ004537 double-strand break repair protein MRE11 K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ018249 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11 E CpipJ_CPIJ004115 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-] D DNA Ligase 4 complex E CpipJ_CPIJ005161 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1] E CpipJ_CPIJ019290 DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1] E CpipJ_CPIJ015108 conserved hypothetical protein K10980 NHEJ1; non-homologous end-joining factor 1 D X-family DNA polymerases D Other NHEJ factors E CpipJ_CPIJ001673 aprataxin K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] E CpipJ_CPIJ001675 FHA-HIT K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] E CpipJ_CPIJ008308 conserved hypothetical protein K13295 APLF; aprataxin and PNK-like factor [EC:3.1.-.-] E CpipJ_CPIJ014048 artemis protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-] C FA (Fanconi anemia) pathway D FA core complex E CpipJ_CPIJ001067 E3 ubiquitin-protein ligase FANCL K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27] E CpipJ_CPIJ020191 conserved hypothetical protein K10896 FANCM; fanconi anemia group M protein D FA core complex binding factors D Bloom's syndrome complex (BTR) E CpipJ_CPIJ007633 ATP-dependent DNA helicase hus2 K10901 BLM; bloom syndrome protein [EC:5.6.2.4] E CpipJ_CPIJ006288 DNA topoisomerase 3-alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E CpipJ_CPIJ009756 DNA topoisomerase 3-beta K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] E CpipJ_CPIJ004237 conserved hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1 E CpipJ_CPIJ019872 conserved hypothetical protein K10990 RMI1; RecQ-mediated genome instability protein 1 D FANCD2-I complex E CpipJ_CPIJ016670 conserved hypothetical protein K10891 FANCD2; fanconi anemia group D2 protein E CpipJ_CPIJ000904 conserved hypothetical protein K10895 FANCI; fanconi anemia group I protein D Downstream FA components E CpipJ_CPIJ012893 conserved hypothetical protein K08775 BRCA2; breast cancer 2 susceptibility protein D Other FA pathway factors E CpipJ_CPIJ003679 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51 E CpipJ_CPIJ018012 RAD51C protein K10870 RAD51L2; RAD51-like protein 2 E CpipJ_CPIJ001341 RAD51C protein K10870 RAD51L2; RAD51-like protein 2 E CpipJ_CPIJ014662 ubiquitin specific protease K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1 [EC:3.4.19.12] E CpipJ_CPIJ014111 conserved hypothetical protein K15361 WDR48; WD repeat-containing protein 48 C Other DSBR factors D Protein phosphatase 6 E CpipJ_CPIJ016659 serine/threonine-protein phosphatase PP-V K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16] E CpipJ_CPIJ019453 conserved hypothetical protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3 D Ubiquitin ligases E CpipJ_CPIJ012808 conserved hypothetical protein K20779 RNF168; E3 ubiquitin-protein ligase RNF168 [EC:2.3.2.31] E CpipJ_CPIJ012809 conserved hypothetical protein K20779 RNF168; E3 ubiquitin-protein ligase RNF168 [EC:2.3.2.31] E CpipJ_CPIJ011294 hect E3 ubiquitin ligase K10595 HERC2; E3 ubiquitin-protein ligase HERC2 [EC:2.3.2.26] D Others E CpipJ_CPIJ008383 conserved hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1 E CpipJ_CPIJ019404 WD repeat domain 70 K24752 WDR70; WD repeat-containing protein 70 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CpipJ_CPIJ003345 DNA polymerase eta K03509 POLH; DNA polymerase eta [EC:2.7.7.7] D CpipJ_CPIJ018238 DNA polymerase IV K03510 POLI; DNA polymerase iota [EC:2.7.7.7] D CpipJ_CPIJ007351 terminal deoxycytidyl transferase rev1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] C B-family DNA polymerases D CpipJ_CPIJ013042 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7] D CpipJ_CPIJ013041 DNA polymerase zeta catalytic subunit K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7] C A-family DNA polymerase C Rad6 epistasis group D CpipJ_CPIJ004272 ubiquitin-conjugating enzyme rad6 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] D CpipJ_CPIJ014411 ubiquitin-conjugating enzyme K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D CpipJ_CPIJ007565 ubiquitin-conjugating enzyme K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D CpipJ_CPIJ006567 ubiquitin-conjugating enzyme E2-17 kDa K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D CpipJ_CPIJ009046 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen D CpipJ_CPIJ000584 conserved hypothetical protein K24051 SPRTN; SprT-like domain-contaning protein Spartan B Check point factors C Rad9-Hus1-Rad1 complex D CpipJ_CPIJ013220 DNA repair protein rad9 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2] D CpipJ_CPIJ019712 checkpoint protein HUS1 K10903 HUS1; HUS1 checkpoint protein D CpipJ_CPIJ016895 checkpoint protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2] C HRAD17(Rad24)-RFC complex D CpipJ_CPIJ003814 cell cycle checkpoint protein rad17 K06662 HRAD17; cell cycle checkpoint protein D CpipJ_CPIJ001399 replication factor C subunit 4 K10755 RFC2_4; replication factor C subunit 2/4 D CpipJ_CPIJ000302 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4 D CpipJ_CPIJ001914 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 D CpipJ_CPIJ000126 replication factor C 38kD subunit K10756 RFC3_5; replication factor C subunit 3/5 D CpipJ_CPIJ014481 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex D CpipJ_CPIJ016895 checkpoint protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2] C FPC (fork protection complex) D CpipJ_CPIJ000659 timeout/timeless-2 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1 D CpipJ_CPIJ000660 timeout/timeless-2 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1 D CpipJ_CPIJ017219 conserved hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3 D CpipJ_CPIJ009641 conserved hypothetical protein K25773 CLSPN; claspin C Triple T complex D CpipJ_CPIJ009622 conserved hypothetical protein K20403 TTI1; TELO2-interacting protein 1 C BAG6-UBL4A-GET4 complex D CpipJ_CPIJ008967 conserved hypothetical protein K23390 BAG6; large proline-rich protein BAG6 D CpipJ_CPIJ008968 conserved hypothetical protein K23390 BAG6; large proline-rich protein BAG6 D CpipJ_CPIJ004001 anopheles stephensi ubiquitin K23388 UBL4; ubiquitin-like protein 4 D CpipJ_CPIJ011855 conserved hypothetical protein K23387 GET4; golgi to ER traffic protein 4 C Other check point factors D CpipJ_CPIJ002521 esr1 protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1] D CpipJ_CPIJ001772 ataxia telangiectasia mutated K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1] D CpipJ_CPIJ001777 ataxia telangiectasia mutated K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1] D CpipJ_CPIJ005290 conserved hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1] D CpipJ_CPIJ009147 serine/threonine-protein kinase chk2 K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1] D CpipJ_CPIJ001662 M-phase inducer phosphatase 2 K05866 CDC25B; M-phase inducer phosphatase 2 [EC:3.1.3.48] D CpipJ_CPIJ008589 14-3-3 protein K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta D CpipJ_CPIJ013385 conserved hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon D CpipJ_CPIJ001106 conserved hypothetical protein K19483 NAV2; neuron navigator 2 [EC:5.6.2.4] D CpipJ_CPIJ001097 conserved hypothetical protein K19483 NAV2; neuron navigator 2 [EC:5.6.2.4] D CpipJ_CPIJ001108 conserved hypothetical protein K19483 NAV2; neuron navigator 2 [EC:5.6.2.4] D CpipJ_CPIJ016939 mitosis inhibitor protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1] D CpipJ_CPIJ007193 period circadian protein K02633 PER2; period circadian protein 2 D CpipJ_CPIJ004008 fimbrin/plastin K17336 PLS3; plastin-3 D CpipJ_CPIJ018445 downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son D CpipJ_CPIJ019476 vacuolar protein sorting-associating protein 4A K12196 VPS4; vacuolar protein-sorting-associated protein 4 D CpipJ_CPIJ003352 zinc finger K24778 ZFYVE19; abscission/NoCut checkpoint regulator B Other factors with a suspected DNA repair function C DNA polymerases D CpipJ_CPIJ007630 DNA polymerase v K02331 POL5; DNA polymerase phi [EC:2.7.7.7] C Nucleases D CpipJ_CPIJ003945 three prime repair exonuclease 1 K10790 TREX1; three prime repair exonuclease 1 [EC:3.1.11.2] D CpipJ_CPIJ012074 three prime repair exonuclease 1 K10790 TREX1; three prime repair exonuclease 1 [EC:3.1.11.2] D CpipJ_CPIJ019503 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein D CpipJ_CPIJ018886 DNA cross-link repair 1A protein K15340 DCLRE1A; DNA cross-link repair 1A protein D CpipJ_CPIJ004996 conserved hypothetical protein K21411 ANKLE1; ankyrin repeat and LEM domain-containing protein 1 D CpipJ_CPIJ010294 conserved hypothetical protein K21411 ANKLE1; ankyrin repeat and LEM domain-containing protein 1 D CpipJ_CPIJ020128 ankyrin repeat domain 41 K21411 ANKLE1; ankyrin repeat and LEM domain-containing protein 1 C Helicases D CpipJ_CPIJ010550 DNA polymerase theta K19178 HELQ; POLQ-like helicase [EC:5.6.2.4] C PSO4 complex D CpipJ_CPIJ011261 cell cycle control protein cwf8 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D CpipJ_CPIJ005780 pre-mRNA-splicing factor cef-1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D CpipJ_CPIJ003889 breast carcinoma amplified sequence 2 K12861 BCAS2; pre-mRNA-splicing factor SPF27 D CpipJ_CPIJ004561 pleiotropic regulator 1 K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D CpipJ_CPIJ007497 Nudt18 protein K17817 NUDT18; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D CpipJ_CPIJ005616 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CpipJ_CPIJ005992 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D CpipJ_CPIJ002337 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CpipJ_CPIJ003975 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CpipJ_CPIJ002767 single-strand selective monofunctional uracil DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E CpipJ_CPIJ016010 endonuclease iii K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CpipJ_CPIJ004000 endonuclease iii K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E CpipJ_CPIJ009639 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D CpipJ_CPIJ009639 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D CpipJ_CPIJ005616 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024