+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Magallana gigas (Pacific oyster)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        105344236 DNA-directed RNA polymerase II subunit RPB1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        117685579 DNA-directed RNA polymerase II subunit RPB2-like	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        105343101 DNA-directed RNA polymerase II subunit RPB2 isoform X1	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        105321855 DNA-directed RNA polymerase II subunit RPB3	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        105338495 DNA-directed RNA polymerase II subunit RPB11-a	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        105317502 DNA-directed RNA polymerase II subunit RPB4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        105319613 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        105329337 DNA-directed RNA polymerase II subunit RPB9	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        105335325 DNA-directed RNA polymerase II subunit GRINL1A	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        105330308 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        105336503 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        105330854 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        105329516 transcription initiation factor IIA subunit 1 isoform X1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        105329686 transcription initiation factor IIA subunit 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        117687428 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        117687429 transcription initiation factor IIA subunit 2-like	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        105324884 transcription initiation factor IIB isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        105343014 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105347432 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105339649 transcription initiation factor TFIID subunit 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        105318056 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        105337118 transcription initiation factor TFIID subunit 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        105333844 transcription initiation factor TFIID subunit 3-like	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        105328629 transcription initiation factor TFIID subunit 4B	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        105321672 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        105333380 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        105326365 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        105328924 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        105336317 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        105338929 LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        105343107 transcription initiation factor TFIID subunit 9B isoform X1	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        105340199 transcription initiation factor TFIID subunit 10 isoform X2	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        105331189 transcription initiation factor TFIID subunit 11 isoform X1	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        105318755 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        105347666 transcription initiation factor TFIID subunit 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        105335954 RNA-binding protein FUS isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        105323115 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        105335523 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        105328977 general transcription factor IIF subunit 1 isoform X1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        105332690 general transcription factor IIF subunit 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        105342019 general transcription factor IIH subunit 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        105345292 general transcription factor IIH subunit 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        105343120 general transcription factor IIH subunit 3 isoform X1	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        105336692 general transcription factor IIH subunit 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        117681418 general transcription factor IIH subunit 4-like	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        105320807 general transcription and DNA repair factor IIH helicase subunit XPB isoform X1	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        105327986 general transcription and DNA repair factor IIH helicase subunit XPD-like	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        105317788 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        105330271 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        105333009 cyclin-H-like	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        105333104 mediator of RNA polymerase II transcription subunit 6 isoform X1	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        105326691 mediator of RNA polymerase II transcription subunit 8-B-like	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        105344744 mediator of RNA polymerase II transcription subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        105341254 mediator of RNA polymerase II transcription subunit 17 isoform X1	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        105328741 mediator of RNA polymerase II transcription subunit 18 isoform X2	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        105327380 mediator of RNA polymerase II transcription subunit 19-like isoform X1	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        105328190 mediator of RNA polymerase II transcription subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        105338871 mediator of RNA polymerase II transcription subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        105346413 mediator of RNA polymerase II transcription subunit 28 isoform X1	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        105332132 mediator of RNA polymerase II transcription subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        105333049 mediator of RNA polymerase II transcription subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        105325396 mediator of RNA polymerase II transcription subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        105338766 mediator of RNA polymerase II transcription subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        105340388 mediator of RNA polymerase II transcription subunit 7 isoform X1	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        105317638 mediator of RNA polymerase II transcription subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        105340058 mediator of RNA polymerase II transcription subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        105338405 mediator of RNA polymerase II transcription subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        105331677 mediator of RNA polymerase II transcription subunit 14-like	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        105340062 mediator of RNA polymerase II transcription subunit 15 isoform X1	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        105343925 mediator of RNA polymerase II transcription subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        105330051 cyclin-dependent kinase 8 isoform X1	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        105334269 cyclin-C-like	K15161 CCNC; cyclin-C 
E        105348857 mediator of RNA polymerase II transcription subunit 12-like protein isoform X1	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        105345312 mediator of RNA polymerase II transcription subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        105318503 mediator of RNA polymerase II transcription subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        117684250 mediator of RNA polymerase II transcription subunit 23-like	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        105317688 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        105330248 mediator of RNA polymerase II transcription subunit 25 isoform X1	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        105340733 mediator of RNA polymerase II transcription subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        105327639 mediator of RNA polymerase II transcription subunit 27-A	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        105331688 histone acetyltransferase KAT2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        105345162 transformation/transcription domain-associated protein isoform X1	K08874 TRRAP; transformation/transcription domain-associated protein 
E        105330155 transcription initiation protein SPT3 homolog isoform X1	K11313 SUPT3H; transcription initiation protein SPT3 
E        105338435 transcriptional adapter 2-alpha	K11314 TADA2A; transcriptional adapter 2-alpha 
E        105343885 transcriptional adapter 2-beta	K15127 TADA2B; transcriptional adapter 2-beta 
E        105347817 transcriptional adapter 1	K11317 TADA1; transcriptional adapter 1 
E        105318056 transcription initiation factor TFIID subunit 2 isoform X1	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        105328629 transcription initiation factor TFIID subunit 4B	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        105321672 transcription initiation factor TFIID subunit 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        105333380 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        105326365 TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        105328924 transcription initiation factor TFIID subunit 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        105336317 transcription initiation factor TFIID subunit 7-like isoform X1	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        105343107 transcription initiation factor TFIID subunit 9B isoform X1	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        105340199 transcription initiation factor TFIID subunit 10 isoform X2	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        105318755 transcription initiation factor TFIID subunit 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        105326509 ataxin-7-like protein 3 isoform X1	K11363 SGF11; SAGA-associated factor 11 
E        105343964 SAGA-associated factor 29 isoform X1	K11364 SGF29; SAGA-associated factor 29 
E        105330475 STAGA complex 65 subunit gamma	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        105342268 ataxin-7	K11318 ATXN7; ataxin-7 
E        105327613 LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        105330451 transcription and mRNA export factor ENY2 isoform X1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        105334761 ubiquitin carboxyl-terminal hydrolase 22 isoform X1	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        105344728 splicing factor 3B subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        105331426 probable global transcription activator SNF2L2 isoform X1	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        105324965 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        105323254 SWI/SNF complex subunit SMARCC2 isoform X1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        105342311 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        105319561 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        105326705 actin, cytoplasmic	K05692 ACTB_G1; actin beta/gamma 1 
E        105331444 actin	K05692 ACTB_G1; actin beta/gamma 1 
E        105332192 actin-5	K05692 ACTB_G1; actin beta/gamma 1 
E        105332193 actin, cytoplasmic	K05692 ACTB_G1; actin beta/gamma 1 
E        105340468 actin-2	K05692 ACTB_G1; actin beta/gamma 1 
E        105335713 actin, adductor muscle	K05692 ACTB_G1; actin beta/gamma 1 
E        117692766 actin-6-like	K05692 ACTB_G1; actin beta/gamma 1 
E        105326698 actin-like	K05692 ACTB_G1; actin beta/gamma 1 
E        105335284 actin-like	K05692 ACTB_G1; actin beta/gamma 1 
E        117684888 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        105340471 LOW QUALITY PROTEIN: actin	K05692 ACTB_G1; actin beta/gamma 1 
E        117680516 actin-like	K05692 ACTB_G1; actin beta/gamma 1 
E        105332777 actin-5	K05692 ACTB_G1; actin beta/gamma 1 
E        105332779 actin-3	K05692 ACTB_G1; actin beta/gamma 1 
E        117690321 actin-3-like	K05692 ACTB_G1; actin beta/gamma 1 
E        105340469 actin	K05692 ACTB_G1; actin beta/gamma 1 
E        105348702 actin-like protein 6B	K11652 ACTL6B; actin-like protein 6B 
E        105347668 AT-rich interactive domain-containing protein 1A isoform X1	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        105347589 AT-rich interactive domain-containing protein 2 isoform X1	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        105317284 protein polybromo-1 isoform X1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        105324965 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        105338280 activated RNA polymerase II transcriptional coactivator p15 isoform X1	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        105335754 cell division cycle and apoptosis regulator protein 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        105318390 transcription elongation factor A protein 1 isoform X1	K03145 TFIIS; transcription elongation factor S-II 
E        105347027 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        105323274 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
E        105338492 transcription elongation factor SPT6	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        105339697 transcription termination factor 2	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        105338678 pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        105342117 cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        105319722 cleavage and polyadenylation specificity factor subunit 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        105338165 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        105320999 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        105326211 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        105337924 serine/threonine-protein phosphatase PP1-beta catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        105318349 serine/threonine-protein phosphatase alpha-2 isoform isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        117689358 LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1-beta catalytic subunit-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        105342182 symplekin	K06100 SYMPK; symplekin 
E        105333262 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        105345357 5'-3' exoribonuclease 2 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        105317385 decapping and exoribonuclease protein	K14845 RAI1; RAT1-interacting protein 
E        105321853 regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        105330115 non-POU domain-containing octamer-binding protein isoform X1	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        105334769 SR-related and CTD-associated factor 4	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        105339815 putative peptidyl-prolyl cis-trans isomerase dodo	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        105332131 RNA polymerase II-associated factor 1 homolog	K15174 PAF1; RNA polymerase II-associated factor 1 
E        105320091 parafibromin	K15175 CDC73; parafibromin 
E        105317913 RNA polymerase-associated protein CTR9 homolog	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        105321231 LOW QUALITY PROTEIN: RNA polymerase-associated protein LEO1	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        105342792 RNA polymerase-associated protein RTF1 homolog	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        105341883 negative elongation factor A	K15179 WHSC2; negative elongation factor A 
E        105333706 LOW QUALITY PROTEIN: negative elongation factor B	K15180 COBRA1; negative elongation factor B 
E        105328627 negative elongation factor D	K15181 TH1L; negative elongation factor C/D 
E        105332377 LOW QUALITY PROTEIN: negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        105330401 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        105329853 AF4/FMR2 family member 4 isoform X3	K15185 AFF4; AF4/FMR2 family member 4 
E        105320669 ELL-associated factor 1 isoform X1	K15186 EAF; ELL-associated factor 
E        105330254 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        105331277 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        105330401 RNA polymerase II elongation factor ELL	K15183 ELL; RNA polymerase II elongation factor ELL 
E        105346564 little elongation complex subunit 2-like	K26144 ICE2; little elongation complex subunit 2 
D      Brd4/P-TEFb complex
E        105330254 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        105331277 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        105327721 protein HEXIM	K15189 HEXIM1_2; protein HEXIM1/2 
E        117682274 protein HEXIM-like	K15189 HEXIM1_2; protein HEXIM1/2 
E        105342866 7SK snRNA methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        105329797 la-related protein 7	K15191 LARP7; La-related protein 7 
E        105330254 cyclin-T2 isoform X1	K15188 CCNT; cyclin T 
E        105331277 cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        105321713 TATA-binding protein-associated factor 172	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        105348452 protein Dr1	K21751 DR1; down-regulator of transcription 1 
E        105322423 dr1-associated corepressor	K21752 DRAP1; Dr1-associated corepressor 
E        105340521 protein SPT2 homolog	K15193 SPTY2D1; protein SPT2 
E        105346609 RNA polymerase II subunit A C-terminal domain phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        105333567 CTD small phosphatase-like protein isoform X2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        105335684 protein IWS1 homolog isoform X2	K17498 SPN1; transcription factor SPN1 
E        105348717 cysteine/serine-rich nuclear protein 3	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        117681554 cysteine/serine-rich nuclear protein 3-like	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        105344379 RNA polymerase II-associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        105331312 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        105338548 RNA polymerase II-associated protein 3 isoform X1	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        105343893 cyclin-K	K23326 CCNK; cyclin K 
E        105322439 GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        105328931 GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        105331015 GPN-loop GTPase 3 isoform X1	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        105320678 DNA-directed RNA polymerase III subunit RPC1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        105329503 DNA-directed RNA polymerase III subunit RPC2 isoform X1	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        117691618 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        105317812 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol III specific subunits
E        105324238 DNA-directed RNA polymerase III subunit RPC3	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        105329613 DNA-directed RNA polymerase III subunit RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        105327819 DNA-directed RNA polymerase III subunit RPC5 isoform X1	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        105342392 DNA-directed RNA polymerase III subunit RPC6	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        105345109 DNA-directed RNA polymerase III subunit RPC7-like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        105334765 DNA-directed RNA polymerase III subunit RPC8	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        105344347 DNA-directed RNA polymerase III subunit RPC9	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
D      Pol I, II, III common subunits
E        105330308 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        105336503 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        105330854 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      TFIIIA
E        105333572 transcription factor IIIA	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        105343014 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105347432 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105326171 transcription factor IIIB 90 kDa subunit isoform X1	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        105329599 transcription factor IIIB 50 kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
D      TFIIIC
E        105331947 general transcription factor 3C polypeptide 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        105324283 general transcription factor 3C polypeptide 2-like isoform X1	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        105334109 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        105334138 general transcription factor 3C polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        105331313 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        105344466 general transcription factor 3C polypeptide 6 isoform X1	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        105331313 general transcription factor 3C polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        105334109 general transcription factor 3C polypeptide 3 isoform X1	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        105333984 snRNA-activating protein complex subunit 1 isoform X1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        105344084 snRNA-activating protein complex subunit 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        105341811 snRNA-activating protein complex subunit 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        105318365 LOW QUALITY PROTEIN: POU domain, class 2, transcription factor 1	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        105344095 zinc finger protein 76	K20828 ZNF143_76; zinc finger protein 143/76 
E        105321101 repressor of RNA polymerase III transcription MAF1 homolog isoform X1	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        105333704 DNA-directed RNA polymerase I subunit RPA1	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        105341744 DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        105317812 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
D      Pol I specific subunits
E        105319729 DNA-directed RNA polymerase I subunit RPA49	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        105333962 DNA-directed RNA polymerase I subunit RPA43-like	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        105324220 DNA-directed RNA polymerase I subunit RPA12	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        105330308 DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        105336503 DNA-directed RNA polymerases I, II, and III subunit RPABC2	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        105330854 DNA-directed RNA polymerases I, II, and III subunit RPABC3	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
C    Basal transcription factors
D      SL1/TIF-1B
E        105343014 TATA-box-binding protein-like	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105347432 TATA box-binding protein-like protein 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        105324679 TATA box-binding protein-associated factor RNA polymerase I subunit A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        105335258 uncharacterized protein LOC105335258	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        105327453 uncharacterized protein LOC105327453	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        105342052 RNA polymerase I-specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        105342054 upstream activation factor subunit spp27 isoform X1	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        105347027 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        105323274 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        105320932 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        105347672 nucleolar and coiled-body phosphoprotein 1 isoform X1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        105324884 transcription initiation factor IIB isoform X1	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        105323115 general transcription factor IIE subunit 1	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024