+F Repair protein KO #

  DNA Repair and Recombination Proteins - Crassaminicella thermophila

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D FQB35_15025 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E FQB35_15020 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E FQB35_12630 DNA-3-methyladenine glycosylase 2 family protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E FQB35_05130 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E FQB35_04305 ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D FQB35_10940 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FQB35_04880 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FQB35_07455 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D FQB35_15025 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E FQB35_00085 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E FQB35_00090 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E FQB35_15020 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E FQB35_05130 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E FQB35_05035 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E FQB35_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E FQB35_11935 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E FQB35_08030 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E FQB35_03830 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E FQB35_03825 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E FQB35_03845 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E FQB35_02900 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FQB35_11940 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FQB35_08030 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E FQB35_11935 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F FQB35_01595 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F FQB35_01600 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F FQB35_01780 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F FQB35_06195 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F FQB35_01120 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E FQB35_07195 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E FQB35_13840 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 E FQB35_09165 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E FQB35_07190 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E FQB35_07065 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E FQB35_07070 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E FQB35_03990 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E FQB35_07525 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E FQB35_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E FQB35_08315 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E FQB35_14590 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E FQB35_14685 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E FQB35_11935 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E FQB35_02900 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FQB35_11940 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FQB35_15235 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FQB35_04485 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FQB35_10545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FQB35_09800 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FQB35_15695 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E FQB35_02355 ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E FQB35_07405 recA; recombinase RecA K03553 recA; recombination protein RecA E FQB35_06560 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FQB35_06565 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FQB35_06555 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E FQB35_04440 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E FQB35_09850 hypothetical protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E FQB35_15660 RusA family crossover junction endodeoxyribonuclease K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E FQB35_06205 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E FQB35_03050 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E FQB35_03045 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E FQB35_11295 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E FQB35_07405 recA; recombinase RecA K03553 recA; recombination protein RecA E FQB35_01460 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E FQB35_00020 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E FQB35_06275 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FQB35_05850 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FQB35_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E FQB35_08165 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E FQB35_14675 recR; recombination protein RecR K06187 recR; recombination protein RecR E FQB35_07105 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E FQB35_06560 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FQB35_06565 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FQB35_06555 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E FQB35_03040 addA; helicase-exonuclease AddAB subunit AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E FQB35_02995 addB; helicase-exonuclease AddAB subunit AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E FQB35_03050 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E FQB35_03045 exonuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E FQB35_11295 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F FQB35_00030 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F FQB35_07790 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F FQB35_01145 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F FQB35_10610 recombinase RecT K07455 recT; recombination protein RecT F FQB35_09880 recombinase RecT K07455 recT; recombination protein RecT F FQB35_03415 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F FQB35_08165 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F FQB35_14675 recR; recombination protein RecR K06187 recR; recombination protein RecR F FQB35_11935 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F FQB35_03830 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F FQB35_03825 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D FQB35_07405 recA; recombinase RecA K03553 recA; recombination protein RecA D FQB35_04670 winged helix-turn-helix transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D FQB35_07120 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D FQB35_09615 helix-turn-helix domain-containing protein K01356 lexA; repressor LexA [EC:3.4.21.88] D FQB35_10320 winged helix-turn-helix transcriptional regulator K01356 lexA; repressor LexA [EC:3.4.21.88] D FQB35_07105 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D FQB35_15235 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FQB35_04485 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FQB35_10545 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FQB35_09800 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FQB35_15695 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FQB35_12130 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D FQB35_10940 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FQB35_04880 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D FQB35_07455 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others D FQB35_07490 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024