+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Cannabis sativa (hemp)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 115706094 mRNA cap guanine-N7 methyltransferase 2 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 115694707 mRNA cap guanine-N7 methyltransferase 1 K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 115696936 mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 115719456 cyclin-dependent kinase D-3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
D Cap binding complex
E 115720866 nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 115700793 nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 115716882 pre-mRNA cleavage factor Im 25 kDa subunit 2 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 115714232 cleavage and polyadenylation specificity factor subunit CG7185 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 115694694 cleavage and polyadenylation specificity factor subunit CG7185 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 115698518 LOW QUALITY PROTEIN: protein CLP1 homolog K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 115705730 polyadenylation and cleavage factor homolog 4 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E 115711551 polyadenylation and cleavage factor homolog 4 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 115716829 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 115725472 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 115704319 uncharacterized protein LOC115704319 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 115697204 30-kDa cleavage and polyadenylation specificity factor 30 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 115724500 flowering time control protein FY isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 115698659 protein ANTHESIS POMOTING FACTOR 1 isoform X1 K14962 WDR82; COMPASS component SWD2
E 115711959 protein ANTHESIS POMOTING FACTOR 1 K14962 WDR82; COMPASS component SWD2
E 115721221 serine/threonine-protein phosphatase PP1 isozyme 9 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115718952 serine/threonine-protein phosphatase PP1 isozyme 2 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115718998 serine/threonine-protein phosphatase PP1 isozyme 2 isoform X1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115716031 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115706248 serine/threonine-protein phosphatase PP1 isozyme 4 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115724054 serine/threonine-protein phosphatase PP1 isozyme 3 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 115722109 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 115695680 cleavage stimulation factor subunit 50 isoform X1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 115712297 cleavage stimulating factor 64 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 115699992 uncharacterized protein LOC115699992 isoform X1 K06100 SYMPK; symplekin
E 115698245 uncharacterized protein LOC115698245 isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 115709604 small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 115713831 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 115700876 small nuclear ribonucleoprotein SmD3b K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 115695693 small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 115701386 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 115697945 probable small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 115701124 probable small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 115716829 cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 115725472 cleavage and polyadenylation specificity factor subunit 3-I K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 115712297 cleavage stimulating factor 64 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 115699992 uncharacterized protein LOC115699992 isoform X1 K06100 SYMPK; symplekin
E 115698245 uncharacterized protein LOC115698245 isoform X1 K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E 115721763 transcription elongation factor SPT4 homolog 2 K15171 SUPT4H1; transcription elongation factor SPT4
E 115710634 putative transcription elongation factor SPT5 homolog 1 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 115716250 N6-adenosine-methyltransferase MT-A70-like K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 115716847 LOW QUALITY PROTEIN: N6-adenosine-methyltransferase non-catalytic subunit MTB K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 115704514 RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 115710249 FKBP12-interacting protein of 37 kDa K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 115716625 uncharacterized protein LOC115716625 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 115697618 E3 ubiquitin-protein ligase HAKAI homolog K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 115717439 nuclear poly(A) polymerase 1 isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 115712646 nuclear poly(A) polymerase 4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 115701580 nuclear poly(A) polymerase 1 isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
E 115713887 LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 115699033 zinc finger CCCH domain-containing protein 41 K13192 RBM26; RNA-binding protein 26
E 115712917 RNA demethylase ALKBH9B K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 115703104 RNA demethylase ALKBH10B isoform X1 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
C Other processing factors
D 115718642 KIN17-like protein K13102 KIN; DNA/RNA-binding protein KIN17
D 115705308 methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 115721436 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
D 115706160 serrate RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 115720794 RNA-binding protein Y14 K12876 RBM8A; RNA-binding protein 8A
E 115710094 protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 115720304 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 115699271 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 115705283 DEAD-box ATP-dependent RNA helicase 56 isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 115697999 DEAD-box ATP-dependent RNA helicase 56 isoform X1 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 115699465 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 115696233 eukaryotic initiation factor 4A-III homolog A K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 115716080 histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 115725355 pinin K13114 PNN; pinin
E 115714666 apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 115710188 serine/arginine-rich splicing factor SR45 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 115721140 serine/arginine repetitive matrix protein 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 115705095 LOW QUALITY PROTEIN: THO complex subunit 1-like K12878 THOC1; THO complex subunit 1
E 115721800 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 115724445 THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 115720304 THO complex subunit 4A K12881 THOC4; THO complex subunit 4
E 115699271 THO complex subunit 4D K12881 THOC4; THO complex subunit 4
E 115724961 THO complex subunit 5A K13174 THOC5; THO complex subunit 5
E 115725381 THO complex subunit 5B K13174 THOC5; THO complex subunit 5
E 115704035 THO complex subunit 6-like K13175 THOC6; THO complex subunit 6
E 115705449 LOW QUALITY PROTEIN: THO complex subunit 6-like K13175 THOC6; THO complex subunit 6
E 115706076 LOW QUALITY PROTEIN: THO complex subunit 7B-like K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 115708273 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 115708306 enhanced ethylene response protein 5 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 115701005 protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 115724650 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 115722220 SAC3 family protein B isoform X1 K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E 115705463 nuclear-pore anchor isoform X1 K09291 TPR; nucleoprotein TPR
E 115718512 protein RAE1 K14298 RAE1; mRNA export factor
E 115707025 protein transport protein SEC13 homolog B K14004 SEC13; protein transport protein SEC13
E 115705296 nuclear pore complex protein NUP85 K14304 NUP85; nuclear pore complex protein Nup85
E 115695830 nuclear pore complex protein NUP43 K14305 NUP43; nuclear pore complex protein Nup43
E 115714817 nuclear pore complex protein NUP54 K14308 NUP54; nuclear pore complex protein Nup54
E 115705580 nuclear pore complex protein NUP88 K14318 NUP88; nuclear pore complex protein Nup88
E 115710069 nuclear pore complex protein NUP93A K14309 NUP93; nuclear pore complex protein Nup93
E 115715174 nuclear pore complex protein NUP98A isoform X1 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 115707903 nuclear pore complex protein NUP96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 115707125 nuclear pore complex protein NUP107 K14301 NUP107; nuclear pore complex protein Nup107
E 115699468 nuclear pore complex protein NUP133 K14300 NUP133; nuclear pore complex protein Nup133
E 115704421 uncharacterized protein LOC115704421 K14311 NUP188; nuclear pore complex protein Nup188
E 115712749 nuclear pore complex protein NUP155 K14312 NUP155; nuclear pore complex protein Nup155
E 115722145 nuclear pore complex protein NUP160 K14303 NUP160; nuclear pore complex protein Nup160
E 115713949 nuclear pore complex protein NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 115724656 nuclear pore complex protein NUP205 K14310 NUP205; nuclear pore complex protein Nup205
E 115699405 LOW QUALITY PROTEIN: nuclear pore complex protein GP210 K14314 NUP210; nuclear pore complex protein Nup210
E 115714570 nuclear pore complex protein NUP58 K14307 NUPL1; nucleoporin p58/p45
E 115712441 zinc finger CCCH domain-containing protein 16 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 115698138 uncharacterized protein LOC115698138 K14315 NDC1; nucleoporin NDC1
E 115715599 protein SEH1 K14299 SEH1; nucleoporin SEH1
E 115725555 protein GLE1 isoform X1 K18723 GLE1; nucleoporin GLE1
D Ran-mediated transport factors
E 115712334 GTP-binding nuclear protein Ran-3 K07936 RAN; GTP-binding nuclear protein Ran
E 115716394 plant UBX domain-containing protein 10 K18726 FAF2; FAS-associated factor 2
E 115719693 cell division cycle protein 48 homolog K13525 VCP; transitional endoplasmic reticulum ATPase
E 115709618 cell division control protein 48 homolog D K13525 VCP; transitional endoplasmic reticulum ATPase
E 115718996 protein N-lysine methyltransferase METTL21A isoform X1 K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 115698489 protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 115717214 protein EXPORTIN 1A K14290 XPO1; exportin-1
E 115719879 LOW QUALITY PROTEIN: protein EXPORTIN 1A-like K14290 XPO1; exportin-1
E 115702040 LOW QUALITY PROTEIN: protein EXPORTIN 1A-like K14290 XPO1; exportin-1
E 115702137 LOW QUALITY PROTEIN: protein EXPORTIN 1A-like K14290 XPO1; exportin-1
E 115705928 exportin-7 isoform X1 K18460 XPO7; exportin-7
E 115722249 RAN GTPase-activating protein 2 K14319 RANGAP1; Ran GTPase-activating protein 1
E 115703648 RAN GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 115706459 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 115697586 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 115705447 eukaryotic initiation factor 4A-10 K03257 EIF4A; translation initiation factor 4A
E 115706765 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 115706780 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 115712003 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 115710319 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 115725490 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 115719118 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 115699208 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 115699210 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 115714253 uncharacterized protein LOC115714253 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 115714601 uncharacterized protein LOC115714601 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 115716462 polyadenylate-binding protein 3-like K13126 PABPC; polyadenylate-binding protein
E 115716494 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 115702952 polyadenylate-binding protein 8 K13126 PABPC; polyadenylate-binding protein
E 115715248 polyadenylate-binding protein 8 K13126 PABPC; polyadenylate-binding protein
E 115707569 polyadenylate-binding protein 6 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 115694820 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 115696766 polyadenylate-binding protein 8-like K13126 PABPC; polyadenylate-binding protein
E 115711430 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 115712524 polyadenylate-binding protein 3 K13126 PABPC; polyadenylate-binding protein
E 115719410 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 115697173 malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 115706337 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E 115725736 partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 115720637 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115719510 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115712643 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115714066 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115697179 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115697375 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115717471 RNA-binding protein 1-like K14411 MSI; RNA-binding protein Musashi
E 115714049 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 115707320 heterogeneous nuclear ribonucleoprotein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 115707322 heterogeneous nuclear ribonucleoprotein 1-like K14411 MSI; RNA-binding protein Musashi
E 115712495 RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 115724947 heterogeneous nuclear ribonucleoprotein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 115723110 heterogeneous nuclear ribonucleoprotein 1 K14411 MSI; RNA-binding protein Musashi
E 115725432 HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 115721028 protein PELOTA 1 K06965 PELO; protein pelota
E 115706101 polyadenylate-binding protein 1 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 115712062 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 115725347 polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 115716309 DEAD-box ATP-dependent RNA helicase 38 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 115722140 pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 115709344 protein MODIFIER OF SNC1 11 K18732 SARNP; SAP domain-containing ribonucleoprotein
E 115697817 transcription factor Pur-alpha 1 K21772 PURA; transcriptional activator protein Pur-alpha
E 115707685 SAC3 family protein A K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 115700930 eukaryotic peptide chain release factor subunit 1-3-like K03265 ETF1; peptide chain release factor subunit 1
E 115698762 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 115698763 eukaryotic peptide chain release factor subunit 1-3 K03265 ETF1; peptide chain release factor subunit 1
E 115709394 eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 115717118 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 115706264 LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 115718999 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 115695344 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 115699222 serine/threonine-protein phosphatase PP2A-3 catalytic subunit isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 115713051 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 115695881 serine/threonine-protein phosphatase PP2A-3 catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 115709671 serine/threonine-protein phosphatase PP2A catalytic subunit K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 115699489 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 115698756 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 115707237 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 115710948 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 115719174 serine/threonine protein phosphatase 2A regulatory subunit B''beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 115722217 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 115712872 serine/threonine protein phosphatase 2A regulatory subunit B''alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 115701372 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115716375 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115714993 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115706010 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115706173 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115707229 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115709598 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115698697 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 115699088 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 115703195 uncharacterized protein LOC115703195 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 115718976 protein SMG7 K14409 SMG7; protein SMG7
E 115699463 uncharacterized protein LOC115699463 K18734 SMG8; protein SMG8
E 115705942 protein SMG9 K18735 SMG9; protein SMG9
E 115706139 protein SMG9-like K18735 SMG9; protein SMG9
E 115714253 uncharacterized protein LOC115714253 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 115714601 uncharacterized protein LOC115714601 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E 115722767 pumilio homolog 24 K14844 PUF6; pumilio homology domain family member 6
E 115722280 myosin-6 K10357 MYO5; myosin V
E 115718590 myosin-11 K10357 MYO5; myosin V
E 115712702 myosin-6-like isoform X1 K10357 MYO5; myosin V
E 115715088 myosin-6 isoform X1 K10357 MYO5; myosin V
E 115715240 myosin-9 K10357 MYO5; myosin V
E 115706112 myosin-15 isoform X1 K10357 MYO5; myosin V
E 115706956 myosin-17 K10357 MYO5; myosin V
E 115707030 myosin-17 K10357 MYO5; myosin V
E 115724778 myosin-12 K10357 MYO5; myosin V
E 115725528 myosin-2 K10357 MYO5; myosin V
E 115697277 exosome component 10 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E 115703233 far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 115707184 spidroin-2 K13210 FUBP; far upstream element-binding protein
E 115696239 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 115719034 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 115722409 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 115706739 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 115720874 elongation factor 1-gamma 2 isoform X1 K03233 EEF1G; elongation factor 1-gamma
E 115720725 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 115699747 elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 115722727 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
D Other mRNA localization factors
E 115719118 protein PIR K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 115718951 flowering locus K homology domain K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115716262 RNA-binding KH domain-containing protein RCF3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115716317 flowering locus K homology domain isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115714344 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115715018 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115707769 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115697231 KH domain-containing protein At4g18375 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115698738 KH domain-containing protein HEN4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 115725133 RNA-binding KH domain-containing protein PEPPER K21444 PCBP3_4; poly(rC)-binding protein 3/4
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 115720819 protein argonaute 4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115722209 protein argonaute 10 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115700443 LOW QUALITY PROTEIN: protein argonaute 5-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115700493 protein argonaute 7-like K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115700515 protein argonaute 5 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115714148 protein argonaute 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115697111 protein argonaute 7 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115697316 protein argonaute 2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115698998 protein argonaute 5 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115724100 protein argonaute 16 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 115706459 eukaryotic translation initiation factor NCBP K03259 EIF4E; translation initiation factor 4E
E 115697586 eukaryotic translation initiation factor 4E-1 K03259 EIF4E; translation initiation factor 4E
E 115717118 regulator of nonsense transcripts 1 homolog K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 115699208 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 115699210 DEAD-box ATP-dependent RNA helicase 37 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 115706522 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 115699311 protein decapping 5 K18749 LSM14; protein LSM14
E 115722995 probable RNA helicase SDE3 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 115702893 transportin-1 K18752 TNPO1; transportin-1
E 115703195 uncharacterized protein LOC115703195 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 115718976 protein SMG7 K14409 SMG7; protein SMG7
E 115712081 zinc finger CCCH domain-containing protein 15 K18753 ZFP36L; butyrate response factor
E 115723453 zinc finger CCCH domain-containing protein 15 K18753 ZFP36L; butyrate response factor
E 115720637 UBP1-associated protein 2B K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115719510 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115712643 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115714066 UBP1-associated protein 2A K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115697179 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115697375 UBP1-associated protein 2C K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 115719634 la-related protein 1A isoform X1 K18757 LARP1; la-related protein 1
E 115712373 la-related protein 1C K18757 LARP1; la-related protein 1
D P-body specific factors
E 115706748 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 115699740 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 115705405 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115707364 sm-like protein LSM1B isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115708296 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115708245 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 115709368 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 115697784 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 115697868 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 115712123 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 115712126 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 115721151 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 115695734 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 115722280 myosin-6 K10357 MYO5; myosin V
E 115718590 myosin-11 K10357 MYO5; myosin V
E 115712702 myosin-6-like isoform X1 K10357 MYO5; myosin V
E 115715088 myosin-6 isoform X1 K10357 MYO5; myosin V
E 115715240 myosin-9 K10357 MYO5; myosin V
E 115706112 myosin-15 isoform X1 K10357 MYO5; myosin V
E 115706956 myosin-17 K10357 MYO5; myosin V
E 115707030 myosin-17 K10357 MYO5; myosin V
E 115724778 myosin-12 K10357 MYO5; myosin V
E 115725528 myosin-2 K10357 MYO5; myosin V
E 115699267 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 115712222 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 115725285 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 115716043 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 115719080 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 115724153 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 115719388 uncharacterized protein LOC115719388 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 115699211 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 115695991 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 115718849 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115717440 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115721067 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115721081 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115719700 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115699398 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115707916 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115710988 DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 115699362 protein PAT1 homolog 2 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 115708707 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 115724879 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 115706264 LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 K14327 UPF2; regulator of nonsense transcripts 2
E 115718999 regulator of nonsense transcripts UPF3 isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 115695344 regulator of nonsense transcripts UPF3 K14328 UPF3; regulator of nonsense transcripts 3
E 115702736 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 115702741 LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 115697196 DNA-directed RNA polymerase II subunit RPB7-like K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 115721260 YTH domain-containing protein ECT3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 115714228 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 115715098 YTH domain-containing protein ECT4 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 115705197 YTH domain-containing protein ECT1 K20102 YTHDF; YTH domain-containing family protein
E 115709250 YTH domain-containing protein ECT4 K20102 YTHDF; YTH domain-containing family protein
E 115723404 YTH domain-containing protein ECT2 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 115706469 oligouridylate-binding protein 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 115707123 oligouridylate-binding protein 1B K13201 TIA1; nucleolysin TIA-1/TIAR
E 115716462 polyadenylate-binding protein 3-like K13126 PABPC; polyadenylate-binding protein
E 115716494 polyadenylate-binding protein 2-like K13126 PABPC; polyadenylate-binding protein
E 115702952 polyadenylate-binding protein 8 K13126 PABPC; polyadenylate-binding protein
E 115715248 polyadenylate-binding protein 8 K13126 PABPC; polyadenylate-binding protein
E 115707569 polyadenylate-binding protein 6 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 115694820 30S ribosomal protein 2, chloroplastic K13126 PABPC; polyadenylate-binding protein
E 115696766 polyadenylate-binding protein 8-like K13126 PABPC; polyadenylate-binding protein
E 115711430 polyadenylate-binding protein 7 K13126 PABPC; polyadenylate-binding protein
E 115712524 polyadenylate-binding protein 3 K13126 PABPC; polyadenylate-binding protein
E 115701339 nuclear transport factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 115705205 nuclear transport factor 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 115725473 eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 115707610 eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 115705447 eukaryotic initiation factor 4A-10 K03257 EIF4A; translation initiation factor 4A
E 115706765 eukaryotic initiation factor 4A-11 K03257 EIF4A; translation initiation factor 4A
E 115706780 eukaryotic initiation factor 4A-9 K03257 EIF4A; translation initiation factor 4A
E 115712003 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 115699465 eukaryotic initiation factor 4A-3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 115696233 eukaryotic initiation factor 4A-III homolog A K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 115710319 eukaryotic translation initiation factor 4G K03260 EIF4G; translation initiation factor 4G
E 115725490 eukaryotic translation initiation factor K03260 EIF4G; translation initiation factor 4G
E 115709323 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 115709330 guanine nucleotide-binding protein subunit beta-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 115706174 tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 115699740 mRNA-decapping enzyme-like protein K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 115706748 mRNA-decapping enzyme subunit 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 115706522 DEAD-box ATP-dependent RNA helicase 8 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 115724879 enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 115699362 protein PAT1 homolog 2 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 115708707 protein PAT1 homolog K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 115705405 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115707364 sm-like protein LSM1B isoform X1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115708296 sm-like protein LSM1B K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 115708245 sm-like protein LSM2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 115709368 sm-like protein LSM3A K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 115697784 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 115697868 probable U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 115712123 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 115712126 sm-like protein LSM5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 115721151 sm-like protein LSM36B K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 115695734 sm-like protein LSM7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
D 5' exonucleases
E 115696905 5'-3' exoribonuclease 3 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 115716957 uncharacterized protein LOC115716957 isoform X1 K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-]
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
E 115719304 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 115703071 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 115699561 putative exosome complex component rrp40 isoform X1 K03681 RRP40; exosome complex component RRP40
E 115708113 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 115695818 exosome complex exonuclease RRP46 homolog isoform X1 K12590 RRP46; exosome complex component RRP46
E 115722942 exosome complex component RRP41-like K12587 MTR3; exosome complex component MTR3
E 115718149 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
E 115715834 exosome complex exonuclease RRP42-like K12589 RRP42; exosome complex component RRP42
E 115717042 exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 115694746 exosome complex component RRP45A K03678 RRP45; exosome complex component RRP45
E 115723591 exosome complex component RRP45A-like K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 115699631 exosome complex exonuclease RRP44 homolog A K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 115722268 protein RRP6-like 2 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 115699576 nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 115696787 uncharacterized protein LOC115696787 K12592 C1D; exosome complex protein LRP1
E 115718868 uncharacterized protein LOC115718868 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 115713019 DExH-box ATP-dependent RNA helicase DExH9 isoform X1 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
E 115713075 DExH-box ATP-dependent RNA helicase DExH10 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 115719410 DExH-box ATP-dependent RNA helicase DExH11 isoform X1 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 115700616 tetratricopeptide repeat protein SKI3 K12600 SKI3; superkiller protein 3
E 115705051 LOW QUALITY PROTEIN: WD repeat-containing protein VIP3-like K12602 WDR61; WD repeat-containing protein 61
E 115707890 WD repeat-containing protein VIP3 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 115699211 carbon catabolite repressor protein 4 homolog 1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 115695991 carbon catabolite repressor protein 4 homolog 4 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 115716043 CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 115719080 probable NOT transcription complex subunit VIP2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 115724153 CCR4-NOT transcription complex subunit 3 isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 115719388 uncharacterized protein LOC115719388 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 115718849 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115717440 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115721067 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115721081 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115719700 probable CCR4-associated factor 1 homolog 9 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115699398 probable CCR4-associated factor 1 homolog 11 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115707916 probable CCR4-associated factor 1 homolog 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 115722515 CCR4-NOT transcription complex subunit 9 isoform X1 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 115724830 CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
E 115720873 LOW QUALITY PROTEIN: ABC transporter I family member 20-like K12608 CAF16; CCR4-NOT complex subunit CAF16
E 115720668 ABC transporter I family member 20 K12608 CAF16; CCR4-NOT complex subunit CAF16
E 115712885 ABC transporter I family member 19 K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
D Other 3'-5' decay factors
E 115714031 uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 115715082 LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 115695644 poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 115699193 DExH-box ATP-dependent RNA helicase DExH1 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 115699350 DExH-box ATP-dependent RNA helicase DExH6 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 115705727 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 115711584 DExH-box ATP-dependent RNA helicase DExH3 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 115712582 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 115719110 uncharacterized protein LOC115719110 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 115700522 protein RST1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 115721062 oligoribonuclease isoform X1 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E 115721363 uncharacterized protein LOC115721363 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E 115719065 cytosolic enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115713386 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115707220 enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115707804 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115709279 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115709404 enolase 1, chloroplastic K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 115722551 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 115699748 polyribonucleotide nucleotidyltransferase 2, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 115714214 ATP-dependent 6-phosphofructokinase 5, chloroplastic K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115704579 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115704580 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115704582 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115704584 ATP-dependent 6-phosphofructokinase 6-like K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115705137 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115705721 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115707250 ATP-dependent 6-phosphofructokinase 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115707565 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 115697040 ATP-dependent 6-phosphofructokinase 6 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 115721137 LOW QUALITY PROTEIN: heat shock 70 kDa protein, mitochondrial-like K04043 dnaK; molecular chaperone DnaK
E 115703671 heat shock 70 kDa protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 115722244 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 115714262 chaperonin CPN60-2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 115706958 chaperonin CPN60-like 2, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 115695916 ruBisCO large subunit-binding protein subunit beta, chloroplastic K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E 115697386 chaperonin 60 subunit beta 4, chloroplastic isoform X1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 115703071 exosome complex component RRP4 homolog K03679 RRP4; exosome complex component RRP4
E 115719304 exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 115708113 exosome complex component RRP41 homolog K11600 RRP41; exosome complex component RRP41
E 115718149 exosome complex exonuclease RRP42 K12589 RRP42; exosome complex component RRP42
E 115715834 exosome complex exonuclease RRP42-like K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024