+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Clostridium scindens

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D HDCHBGLK_02917 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C HDCHBGLK_00197 era; GTPase Era K03595 era; GTPase C HDCHBGLK_03053 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C HDCHBGLK_03133 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C HDCHBGLK_03111 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB C HDCHBGLK_00816 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D HDCHBGLK_03079 rsuA; Ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D HDCHBGLK_01255 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D HDCHBGLK_01845 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D HDCHBGLK_03086 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D HDCHBGLK_03581 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D HDCHBGLK_01189 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D HDCHBGLK_03445 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D HDCHBGLK_01005 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D HDCHBGLK_03106 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D HDCHBGLK_03331 Putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D HDCHBGLK_02947 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D HDCHBGLK_01586 rlmK; Ribosomal RNA large subunit methyltransferase K K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D HDCHBGLK_01153 rlmN_1; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D HDCHBGLK_01846 rlmN_2; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D HDCHBGLK_03106 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D HDCHBGLK_02516 rlmCD_2; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D HDCHBGLK_01398 rlmCD_1; 23S rRNA (uracil-C(5))-methyltransferase RlmCD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D HDCHBGLK_03074 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D HDCHBGLK_02446 rluD_2; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D HDCHBGLK_03039 rluD_3; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D HDCHBGLK_00379 rluD_1; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D HDCHBGLK_01289 rluA; Ribosomal large subunit pseudouridine synthase A K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D HDCHBGLK_01751 rluF; 23S rRNA pseudouridine(2604) synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C HDCHBGLK_00454 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C HDCHBGLK_03241 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C HDCHBGLK_02881 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C HDCHBGLK_03582 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C HDCHBGLK_02917 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C HDCHBGLK_03575 yrrK; Putative pre-16S rRNA nuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] C HDCHBGLK_03332 mrnC; Mini-ribonuclease 3 K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] B rRNA helicases C HDCHBGLK_00345 cshA; DEAD-box ATP-dependent RNA helicase CshA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C HDCHBGLK_00197 era; GTPase Era K03595 era; GTPase C HDCHBGLK_01849 rsgA; Small ribosomal subunit biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C HDCHBGLK_02854 der; GTPase Der K03977 engA; GTPase C HDCHBGLK_03053 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-] C HDCHBGLK_03237 rbgA; Ribosome biogenesis GTPase A K14540 rbgA; ribosome biogenesis GTPase A C HDCHBGLK_02189 hflX; GTPase HflX K03665 hflX; GTPase B Other maturation factors C HDCHBGLK_01036 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C HDCHBGLK_03415 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C HDCHBGLK_03129 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C HDCHBGLK_03134 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C HDCHBGLK_01197 hypothetical protein K14761 rlbA; ribosome-associated protein C HDCHBGLK_03049 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein C HDCHBGLK_02955 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor C HDCHBGLK_03052 RNA-binding protein K07574 yhbY; RNA-binding protein C HDCHBGLK_00042 hpf; Ribosome hibernation promotion factor K05808 hpf; ribosome hibernation promoting factor C HDCHBGLK_02025 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase C HDCHBGLK_02913 hypothetical protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024