+F Repair protein KO #

  DNA Repair and Recombination Proteins - Clostridium scindens

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HDCHBGLK_01408 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HDCHBGLK_02183 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HDCHBGLK_00471 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HDCHBGLK_00920 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HDCHBGLK_01559 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E HDCHBGLK_03349 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HDCHBGLK_00355 mutX; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HDCHBGLK_03294 dut_2; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HDCHBGLK_00858 dut_1; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HDCHBGLK_01408 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E HDCHBGLK_02183 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E HDCHBGLK_02321 alkA; DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HDCHBGLK_00471 mutY; Adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HDCHBGLK_02650 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E HDCHBGLK_00920 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HDCHBGLK_01559 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HDCHBGLK_00259 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E HDCHBGLK_02695 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E HDCHBGLK_03417 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HDCHBGLK_01752 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E HDCHBGLK_02904 polA_3; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E HDCHBGLK_03679 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E HDCHBGLK_03680 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E HDCHBGLK_00051 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E HDCHBGLK_02513 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_02796 yjcD; Putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_01081 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_02904 polA_3; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E HDCHBGLK_01752 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F HDCHBGLK_00796 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F HDCHBGLK_00795 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F HDCHBGLK_00507 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F HDCHBGLK_02880 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F HDCHBGLK_03426 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HDCHBGLK_03013 mutS_2; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HDCHBGLK_01395 mutS2_1; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 E HDCHBGLK_01603 mutS2_2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HDCHBGLK_03014 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E HDCHBGLK_03110 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E HDCHBGLK_03109 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E HDCHBGLK_01448 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E HDCHBGLK_02343 polC_2; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E HDCHBGLK_01196 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E HDCHBGLK_02318 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E HDCHBGLK_01008 dnaX_1; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E HDCHBGLK_01309 dnaX_2; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E HDCHBGLK_01752 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HDCHBGLK_02513 pcrA_2; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_02796 yjcD; Putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_01081 rep; ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HDCHBGLK_02078 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HDCHBGLK_01372 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E HDCHBGLK_02972 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E HDCHBGLK_00315 dpnM_1; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72] E HDCHBGLK_00738 dpnM_2; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72] E HDCHBGLK_01931 vsr; Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HDCHBGLK_03677 recD2_2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E HDCHBGLK_03173 recA; Protein RecA K03553 recA; recombination protein RecA E HDCHBGLK_03194 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HDCHBGLK_03193 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E HDCHBGLK_01841 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E HDCHBGLK_00057 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E HDCHBGLK_00058 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HDCHBGLK_03173 recA; Protein RecA K03553 recA; recombination protein RecA E HDCHBGLK_02225 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E HDCHBGLK_01198 recF_2; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E HDCHBGLK_03181 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E HDCHBGLK_03417 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E HDCHBGLK_00195 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E HDCHBGLK_01311 recR; Recombination protein RecR K06187 recR; recombination protein RecR E HDCHBGLK_03103 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E HDCHBGLK_03073 recU; Holliday junction resolvase RecU K03700 recU; recombination protein U E HDCHBGLK_03194 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E HDCHBGLK_03193 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E HDCHBGLK_02194 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E HDCHBGLK_02193 addB_2; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E HDCHBGLK_01986 cas1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E HDCHBGLK_00057 sbcC; Nuclease SbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E HDCHBGLK_00058 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HDCHBGLK_03136 gyrA_2; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HDCHBGLK_01200 gyrA_1; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HDCHBGLK_03137 parE; DNA topoisomerase 4 subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HDCHBGLK_01199 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HDCHBGLK_03561 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F HDCHBGLK_01295 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HDCHBGLK_03417 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HDCHBGLK_00195 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F HDCHBGLK_01311 recR; Recombination protein RecR K06187 recR; recombination protein RecR F HDCHBGLK_01752 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HDCHBGLK_01574 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F HDCHBGLK_03679 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F HDCHBGLK_03680 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HDCHBGLK_01719 dinB_2; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HDCHBGLK_01836 dinB_3; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D HDCHBGLK_01634 dinB_1; DNA polymerase IV K03502 umuC; DNA polymerase V C Other SOS response factors D HDCHBGLK_03173 recA; Protein RecA K03553 recA; recombination protein RecA D HDCHBGLK_03048 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D HDCHBGLK_03103 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D HDCHBGLK_02078 ssb_2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HDCHBGLK_01372 ssb_1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D HDCHBGLK_03172 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D HDCHBGLK_00355 mutX; 8-oxo-dGTP diphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HDCHBGLK_03294 dut_2; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HDCHBGLK_00858 dut_1; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HDCHBGLK_02477 nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HDCHBGLK_02478 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D HDCHBGLK_03128 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024