+F Repair protein KO
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DNA Repair and Recombination Proteins - Chlamydia serpentis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D C10C_0558 adaB; Methylated-DNA--protein-cysteine methyltransferase, inducible,methylated-DNA--protein-cysteine methyltransferase,Methylated DNA-protein cysteine methyltransferase,methylated-DNA-[protein]-cysteine S-methyltransferase,6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E C10C_0744 ung; Uracil-DNA glycosylase,uracil-DNA glycosylase,uracil-DNA glycosylase,Uracil DNA glycosylase superfamily K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E C10C_0459 3-methyladenine DNA glycosylase,DNA-3-methyladenine glycosylase,Methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E C10C_0367 mutY; A/G-specific adenine glycosylase,adenine DNA glycosylase,A/G-specific adenine glycosylase,HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E C10C_0807 pdg; UV-endonuclease,endonuclease III,3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase,endonuclease III,HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D C10C_0039 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase,deoxyuridine 5'-triphosphate nucleotidohydrolase,dUTP diphosphatase,dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D C10C_0558 adaB; Methylated-DNA--protein-cysteine methyltransferase, inducible,methylated-DNA--protein-cysteine methyltransferase,Methylated DNA-protein cysteine methyltransferase,methylated-DNA-[protein]-cysteine S-methyltransferase,6-O-methylguanine DNA methyltransferase, DNA binding domain K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E C10C_0744 ung; Uracil-DNA glycosylase,uracil-DNA glycosylase,uracil-DNA glycosylase,Uracil DNA glycosylase superfamily K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E C10C_0459 3-methyladenine DNA glycosylase,DNA-3-methyladenine glycosylase,Methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E C10C_0367 mutY; A/G-specific adenine glycosylase,adenine DNA glycosylase,A/G-specific adenine glycosylase,HhH-GPD superfamily base excision DNA repair protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E C10C_0807 pdg; UV-endonuclease,endonuclease III,3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase,endonuclease III,HhH-GPD superfamily base excision DNA repair protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E C10C_0702 nfo; Endonuclease 4,endonuclease IV,Endonuclease IV,apurinic endonuclease (APN1),Xylose isomerase-like TIM barrel K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E C10C_0521 recJ; Single-stranded-DNA-specific exonuclease recJ,ssDNA exonuclease RecJ,Uncharacterized protein conserved in bacteria,single-stranded-DNA-specific exonuclease RecJ,DHH family K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E C10C_0125 ligA; DNA ligase,NAD-dependent DNA ligase LigA,3-methyladenine DNA glycosylase,DNA ligase, NAD-dependent,NAD-dependent DNA ligase adenylation domain K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E C10C_0076 uvrA; Excinuclease ABC subunit A,excinuclease ABC subunit A,ABC-type phosphonate transport system, ATPase component,excinuclease ABC subunit A,ABC transporter K03701 uvrA; excinuclease ABC subunit A
E C10C_0770 uvrB; Excinuclease ABC subunit B,excinuclease ABC subunit B,Predicted HKD family nuclease,excinuclease ABC subunit B,Ultra-violet resistance protein B K03702 uvrB; excinuclease ABC subunit B
E C10C_0911 uvrC; Excinuclease ABC subunit C,excinuclease ABC subunit C,Nuclease subunit of the excinuclease complex,excinuclease ABC subunit C,UvrC Helix-hairpin-helix N-terminal K03703 uvrC; excinuclease ABC subunit C
E C10C_0743 pcrA; ATP-dependent DNA helicase pcrA,DNA-dependent helicase II,Superfamily I DNA and RNA helicases,ATP-dependent DNA helicase PcrA,UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C10C_0125 ligA; DNA ligase,NAD-dependent DNA ligase LigA,3-methyladenine DNA glycosylase,DNA ligase, NAD-dependent,NAD-dependent DNA ligase adenylation domain K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F C10C_0061 rpoB; DNA-directed RNA polymerase subunit beta,DNA-directed RNA polymerase subunit beta,DNA-directed RNA polymerase, beta subunit,RNA polymerase Rpb2, domain 6 K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F C10C_0062 rpoC; DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase, beta' subunit/160 kD subunit,DNA-directed RNA polymerase, beta' subunit,RNA polymerase Rpb1, domain 1 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F C10C_0590 rpoA; DNA-directed RNA polymerase subunit alpha,DNA-directed RNA polymerase subunit alpha,DNA-directed RNA polymerase, alpha subunit/40 kD subunit,DNA-directed RNA polymerase, alpha subunit,Bacterial RNA polymerase, alpha chain C terminal domain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F C10C_0863 mfd; Transcription-repair-coupling factor,transcription-repair coupling factor,Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein),transcription-repair coupling factor,TRCF domain K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E C10C_0912 mutS; DNA mismatch repair protein mutS,DNA mismatch repair protein MutS,ATP phosphoribosyltransferase,DNA mismatch repair protein MutS,MutS domain V K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E C10C_0781 mutL; DNA mismatch repair protein mutL,DNA mismatch repair protein,DNA mismatch repair enzyme (predicted ATPase),DNA mismatch repair protein MutL,DNA mismatch repair protein, C-terminal domain K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E C10C_1035 xseA; Exodeoxyribonuclease 7 large subunit,exodeoxyribonuclease VII large subunit,exodeoxyribonuclease VII, large subunit,Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E C10C_1034 exodeoxyribonuclease VII small subunit,exodeoxyribonuclease VII, small subunit,Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E C10C_0631 dnaE; DNA polymerase III subunit alpha,DNA polymerase III subunit alpha,DNA polymerase III, alpha subunit,Bacterial DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E C10C_0308 dnaN; DNA polymerase III subunit beta,DNA polymerase III subunit beta,DNA polymerase III, beta subunit,DNA polymerase III beta subunit, N-terminal domain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E C10C_0348 hypothetical protein,DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E C10C_0374 polC_1; DNA polymerase III polC-type,DNA polymerase III subunit epsilon,Uncharacterized protein conserved in bacteria,DNA polymerase III, alpha subunit, Gram-positive type,Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E C10C_0619 polC_2; DNA polymerase III polC-type,DNA polymerase III subunit epsilon,Uncharacterized protein conserved in bacteria,DNA polymerase III, alpha subunit, Gram-positive type,Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E C10C_0028 dnaX_1; DNA polymerase III subunit tau,DNA polymerase III subunits gamma and tau,Holliday junction resolvasome, helicase subunit,DNA polymerase III, subunit gamma and tau,ATPase family associated with various cellular activities (AAA) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E C10C_0243 dnaX_2; DNA polymerase III subunit tau,DNA polymerase III subunit delta',DNA polymerase III, delta' subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E C10C_0125 ligA; DNA ligase,NAD-dependent DNA ligase LigA,3-methyladenine DNA glycosylase,DNA ligase, NAD-dependent,NAD-dependent DNA ligase adenylation domain K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E C10C_0743 pcrA; ATP-dependent DNA helicase pcrA,DNA-dependent helicase II,Superfamily I DNA and RNA helicases,ATP-dependent DNA helicase PcrA,UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E C10C_0351 ssb; Helix-destabilizing protein,single-stranded DNA-binding protein,single-stranded DNA-binding protein,Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E C10C_0708 recB; Exodeoxyribonuclease V beta chain,exonuclease V subunit beta,Superfamily I DNA and RNA helicases,exodeoxyribonuclease V, beta subunit,UvrD/REP helicase K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E C10C_0707 Exonuclease V gamma subunit,exodeoxyribonuclease V, gamma subunit,Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E C10C_0723 recD_2; Exodeoxyribonuclease V alpha chain,exonuclease V subunit alpha,exodeoxyribonuclease V, alpha subunit,Uncharacterized conserved protein (DUF2075) K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E C10C_0103 recD_1; Exodeoxyribonuclease V alpha chain,exonuclease V subunit alpha,helicase, RecD/TraA family,Viral (Superfamily 1) RNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E C10C_0733 recA; Recombinase A,recombinase A,RecA-superfamily ATPases implicated in signal transduction,protein RecA,recA bacterial DNA recombination protein K03553 recA; recombination protein RecA
E C10C_0583 ruvA; Holliday junction ATP-dependent DNA helicase RuvA,Holliday junction DNA helicase RuvA,Holliday junction DNA helicase RuvA,RuvA N terminal domain K03550 ruvA; holliday junction DNA helicase RuvA
E C10C_0355 ruvB; Holliday junction ATP-dependent DNA helicase RuvB,Holliday junction DNA helicase RuvB,Holliday junction resolvasome, helicase subunit,Holliday junction DNA helicase RuvB,Holliday junction DNA helicase ruvB N-terminus K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E C10C_0584 ruvC; Crossover junction endodeoxyribonuclease RuvC,Holliday junction resolvase,crossover junction endodeoxyribonuclease RuvC,Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E C10C_0897 priA; Primosomal protein N',primosome assembly protein PriA,ATP-dependent protease HslVU (ClpYQ), peptidase subunit,primosomal protein N',Type III restriction enzyme, res subunit K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E C10C_0733 recA; Recombinase A,recombinase A,RecA-superfamily ATPases implicated in signal transduction,protein RecA,recA bacterial DNA recombination protein K03553 recA; recombination protein RecA
E C10C_0033 DNA repair protein RadA,RecA-superfamily ATPases implicated in signal transduction,DNA repair protein RadA,KaiC K04485 radA; DNA repair protein RadA/Sms
E C10C_0309 recF; DNA replication and repair protein recF,recombination protein F,Recombinational DNA repair ATPase (RecF pathway),DNA replication and repair protein RecF,RecF/RecN/SMC N terminal domain K03629 recF; DNA replication and repair protein RecF
E C10C_0521 recJ; Single-stranded-DNA-specific exonuclease recJ,ssDNA exonuclease RecJ,Uncharacterized protein conserved in bacteria,single-stranded-DNA-specific exonuclease RecJ,DHH family K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E C10C_0550 recO; Recombination protein O,DNA repair protein RecO,DNA repair protein RecO,Recombination protein O N terminal K03584 recO; DNA repair protein RecO (recombination protein O)
E C10C_0269 recR; Recombination protein RecR,recombination protein RecR,Recombinational DNA repair protein (RecF pathway),recombination protein RecR,Toprim domain K06187 recR; recombination protein RecR
E C10C_0583 ruvA; Holliday junction ATP-dependent DNA helicase RuvA,Holliday junction DNA helicase RuvA,Holliday junction DNA helicase RuvA,RuvA N terminal domain K03550 ruvA; holliday junction DNA helicase RuvA
E C10C_0355 ruvB; Holliday junction ATP-dependent DNA helicase RuvB,Holliday junction DNA helicase RuvB,Holliday junction resolvasome, helicase subunit,Holliday junction DNA helicase RuvB,Holliday junction DNA helicase ruvB N-terminus K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E C10C_0584 ruvC; Crossover junction endodeoxyribonuclease RuvC,Holliday junction resolvase,crossover junction endodeoxyribonuclease RuvC,Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F C10C_0686 gyrA_2; DNA gyrase subunit A,DNA topoisomerase IV subunit A,Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit,DNA gyrase, A subunit,DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F C10C_0245 gyrA_1; DNA gyrase subunit A,DNA gyrase subunit A,Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit,DNA gyrase, A subunit,DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F C10C_0685 gyrB_2; DNA gyrase subunit B,DNA topoisomerase IV subunit B,DNA gyrase, B subunit,DNA gyrase B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F C10C_0246 gyrB_1; DNA gyrase subunit B,DNA gyrase subunit B,Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit,DNA gyrase, B subunit,DNA gyrase B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F C10C_0740 topA; DNA topoisomerase 1,DNA topoisomerase I/SWI domain fusion protein,Zn-finger domain associated with topoisomerase type I,DNA topoisomerase I,DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F C10C_0521 recJ; Single-stranded-DNA-specific exonuclease recJ,ssDNA exonuclease RecJ,Uncharacterized protein conserved in bacteria,single-stranded-DNA-specific exonuclease RecJ,DHH family K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F C10C_0550 recO; Recombination protein O,DNA repair protein RecO,DNA repair protein RecO,Recombination protein O N terminal K03584 recO; DNA repair protein RecO (recombination protein O)
F C10C_0269 recR; Recombination protein RecR,recombination protein RecR,Recombinational DNA repair protein (RecF pathway),recombination protein RecR,Toprim domain K06187 recR; recombination protein RecR
F C10C_0125 ligA; DNA ligase,NAD-dependent DNA ligase LigA,3-methyladenine DNA glycosylase,DNA ligase, NAD-dependent,NAD-dependent DNA ligase adenylation domain K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F C10C_0380 hupA; HB,integration host factor subunit beta,integration host factor, beta subunit,Bacterial DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F C10C_0076 uvrA; Excinuclease ABC subunit A,excinuclease ABC subunit A,ABC-type phosphonate transport system, ATPase component,excinuclease ABC subunit A,ABC transporter K03701 uvrA; excinuclease ABC subunit A
F C10C_0770 uvrB; Excinuclease ABC subunit B,excinuclease ABC subunit B,Predicted HKD family nuclease,excinuclease ABC subunit B,Ultra-violet resistance protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D C10C_0733 recA; Recombinase A,recombinase A,RecA-superfamily ATPases implicated in signal transduction,protein RecA,recA bacterial DNA recombination protein K03553 recA; recombination protein RecA
D C10C_0351 ssb; Helix-destabilizing protein,single-stranded DNA-binding protein,single-stranded DNA-binding protein,Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D C10C_0039 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase,deoxyuridine 5'-triphosphate nucleotidohydrolase,dUTP diphosphatase,dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D C10C_0955 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha,ribonucleotide-diphosphate reductase subunit alpha,ribonucleoside-diphosphate reductase, alpha subunit,Ribonucleotide reductase, barrel domain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D C10C_0956 nrdB; Ribonucleoside-diphosphate reductase subunit beta,ribonucleotide-diphosphate reductase subunit beta,Ribonucleotide reductase, beta subunit,ribonucleoside-diphosphate reductase, class 1b, beta subunit,Ribonucleotide reductase, small chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024