+E	Replication protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Replication Proteins - Clavibacter seminis</h2>
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A<b>Eukaryotic type</b>
B  DNA Replication Initiation Factors
C    pre-RC (pre-replication complex)
C    CDK (cyclin dependent kinase)
C    DDK (Dbf-4 dependent kinase)
C    GINS complex
C    Other initiation factors
B  DNA Replication Elongation Factors
C    DNA polymerase alpha / primase complex
C    DNA polymerase epsilon complex
C    DNA polymerase delta complex
C    DNA polymerase gamma complex (mitochondrial)
C    RPA (replication protein A)
C    RFC (replication factor C)
C    RNase H
D      KYT88_04485 ribbon-helix-helix protein, CopG family	K03469 rnhA; ribonuclease HI [EC:3.1.26.4] 
C    Other elongation factors
B  DNA Replication Termination Factors
C    DNA methylation enzymes
D      KYT88_02800 DNA cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Prevention of re-replication factors
C    Telomere proteins
D      Shelterin complex
D      TERB1-TERB2-MAJIN complex
D      CST complex (animals)
D      CST complex (yeast)
D      RIF proteins
D      SIR proteins
C    Telomerase complex (animals)
D      Dyskerin complex
C    Telomerase complex (fungi)
D      Sm core complex
C    ELG1-RFC complex
C    MRN complex
C    Other termination factors
B  DNA Topoisomerases
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A<b>Prokaryotic type</b>
B  DNA Replication Initiation Factors
C    Initiation factors (bacterial)
D      KYT88_15395 HU family DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
D      KYT88_00005 dnaA; (GenBank) chromosomal replication initiator protein DnaA	K02313 dnaA; chromosomal replication initiator protein 
D      KYT88_13025 replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] 
D      KYT88_15520 dnaB; (GenBank) replicative DNA helicase	K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] 
D      KYT88_08215 dnaG; (GenBank) DNA primase	K02316 dnaG; DNA primase [EC:2.7.7.101] 
D      KYT88_15535 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
C    Initiation factors (archaeal)
B  DNA Replication Elongation Factors
C    Elongation factors (bacterial)
D      DNA polymerase III holoenzyme
E        KYT88_09635 dnaE; (GenBank) DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        KYT88_00010 dnaN; (GenBank) DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        KYT88_08035 holA; (GenBank) DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        KYT88_04805 DNA polymerase III subunit delta'	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        KYT88_08925 3'-5' exonuclease	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        KYT88_11575 3'-5' exonuclease	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        KYT88_12725 3'-5' exoribonuclease	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        KYT88_04645 DNA polymerase III subunit gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      RNase H
E        KYT88_04485 ribbon-helix-helix protein, CopG family	K03469 rnhA; ribonuclease HI [EC:3.1.26.4] 
E        KYT88_07130 ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4] 
D      Other elongation factors
E        KYT88_09125 polA; (GenBank) DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        KYT88_07275 ligA; (GenBank) NAD-dependent DNA ligase LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
C    Elongation factors (archaeal)
D      B-family DNA polymerases
D      D-family DNA polymerases
D      RNase H
E        KYT88_04485 ribbon-helix-helix protein, CopG family	K03469 rnhA; ribonuclease HI [EC:3.1.26.4] 
E        KYT88_07130 ribonuclease HII	K03470 rnhB; ribonuclease HII [EC:3.1.26.4] 
D      RFC (replication factor C)
D      Other elongation factors
B  DNA Replication Termination Factors
C    Terminus site-binding protein
C    DNA methylation enzymes
D      KYT88_10205 Dam family site-specific DNA-(adenine-N6)-methyltransferase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
C    Prevention of re-replication factors
B  DNA Topoisomerases
C    KYT88_00035 gyrA; (GenBank) DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
C    KYT88_08565 DNA topoisomerase IV subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
C    KYT88_00030 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
C    KYT88_08560 type IIA DNA topoisomerase subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
C    KYT88_04795 topA; (GenBank) type I DNA topoisomerase	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
C    KYT88_13610 DNA topoisomerase IB	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
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#Last updated: August 27, 2025