+F Repair protein KO #

  DNA Repair and Recombination Proteins - Clostridium saccharolyticum WM1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Closa_3409 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Closa_3323 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E Closa_3373 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Closa_2629 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Closa_2490 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Closa_3662 DNA-(apurinic or apyrimidinic site) lyase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E Closa_0348 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Closa_1060 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Closa_1343 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Closa_1067 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_2514 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_1891 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_2507 deoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Closa_3409 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Closa_3323 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Closa_3321 transcriptional regulator, AraC family K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] C BER (base exicision repair) D DNA glycosylases E Closa_3373 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Closa_3322 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Closa_2629 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Closa_2490 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Closa_1080 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Closa_0348 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E Closa_1060 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Closa_4122 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Closa_0458 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E Closa_0654 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Closa_1111 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Closa_3315 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E Closa_1442 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Closa_2954 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Closa_0800 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Closa_1083 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Closa_1310 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_1727 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_3917 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_3489 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_1111 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Closa_3315 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Closa_3785 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Closa_3784 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Closa_3738 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Closa_1948 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Closa_4074 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Closa_2051 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Closa_0358 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 E Closa_1071 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Closa_2050 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Closa_3239 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Closa_3238 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Closa_1089 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Closa_1861 DNA polymerase III, alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E Closa_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Closa_0839 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Closa_0026 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Closa_0349 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Closa_3063 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Closa_0174 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Closa_1111 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Closa_3315 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Closa_1310 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_1727 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_3917 helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_3489 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Closa_0232 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Closa_0735 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Closa_3098 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Closa_2849 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Closa_3900 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Closa_0395 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Closa_1102 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Closa_0674 recA protein K03553 recA; recombination protein RecA E Closa_2238 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Closa_2237 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Closa_2127 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Closa_0193 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Closa_2937 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Closa_2938 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E Closa_0118 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Closa_0674 recA protein K03553 recA; recombination protein RecA E Closa_1336 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Closa_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Closa_1960 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Closa_0654 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Closa_0905 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Closa_0176 recombination protein RecR K06187 recR; recombination protein RecR E Closa_3232 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Closa_1976 Recombination protein U K03700 recU; recombination protein U E Closa_2238 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Closa_2237 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E Closa_1016 recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E Closa_1015 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E Closa_0193 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Closa_2937 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Closa_2938 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 E Closa_0118 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Closa_3637 Ku protein K10979 ku; DNA end-binding protein Ku E Closa_1417 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E Closa_3638 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Closa_0006 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Closa_1871 DNA topoisomerase (ATP-hydrolyzing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Closa_0005 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Closa_1870 DNA topoisomerase (ATP-hydrolyzing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Closa_1844 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Closa_4068 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Closa_0654 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Closa_0905 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Closa_0176 recombination protein RecR K06187 recR; recombination protein RecR F Closa_1111 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F Closa_3315 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Closa_2939 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Closa_1442 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Closa_2954 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Closa_0800 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Closa_1320 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Closa_2288 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Closa_1453 UMUC domain protein DNA-repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D Closa_0674 recA protein K03553 recA; recombination protein RecA D Closa_2008 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Closa_3232 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Closa_0232 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Closa_0675 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Closa_1747 Rad3-related DNA helicase-like protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Closa_3495 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Closa_1067 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_2514 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_1891 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Closa_2507 deoxyUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Closa_1634 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Closa_1635 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Closa_2980 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024