+D GENES KO
#
KEGG Orthology (KO) - Campylobacter showae
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:csho00010]
D CSHOW_1427 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CSHOW_1215 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CSHOW_1590 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CSHOW_1592 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CSHOW_1591 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CSHOW_1645 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CSHOW_0538 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CSHOW_1721 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CSHOW_0945 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CSHOW_0946 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_0571 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:csho00020]
D CSHOW_1857 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CSHOW_1065 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CSHOW_0941 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CSHOW_0945 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CSHOW_0946 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CSHOW_0947 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CSHOW_0944 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CSHOW_1472 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1471 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1473 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CSHOW_1912 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CSHOW_1911 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CSHOW_0920 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_1022 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CSHOW_0570 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CSHOW_0571 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CSHOW_1721 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:csho00030]
D CSHOW_1427 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CSHOW_1273 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CSHOW_1947 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CSHOW_0260 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CSHOW_0671 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_0410 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CSHOW_1215 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:csho00040]
D CSHOW_1526 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CSHOW_1426 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CSHOW_1273 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CSHOW_1166 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:csho00051]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_1054 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CSHOW_1842 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CSHOW_1166 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CSHOW_1215 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CSHOW_1590 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CSHOW_1843 GDP-mannose 4,6-dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D CSHOW_0671 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:csho00052]
D CSHOW_1527 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CSHOW_1426 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:csho00053]
D CSHOW_1526 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CSHOW_1529 UDP-glucuronic acid epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:csho00500]
D CSHOW_1426 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_1427 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:csho00520]
D CSHOW_1103 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CSHOW_1380 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CSHOW_0096 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CSHOW_0883 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CSHOW_1015 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CSHOW_1882 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CSHOW_1524 polysaccharide biosynthesis protein, nucleotide sugar dehydrogenase, TviB family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D CSHOW_1278 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CSHOW_1831 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CSHOW_1832 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CSHOW_1836 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CSHOW_1835 pseG; UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranosyl transferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D CSHOW_1837 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CSHOW_1833 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CSHOW_1513 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CSHOW_1514 pglE; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine transaminase K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D CSHOW_1515 pglD; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine N-acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_1426 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CSHOW_1526 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CSHOW_1527 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CSHOW_1529 UDP-glucuronic acid epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D CSHOW_1427 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CSHOW_1054 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CSHOW_1842 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CSHOW_1843 GDP-mannose 4,6-dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
C 00620 Pyruvate metabolism [PATH:csho00620]
D CSHOW_1721 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CSHOW_0945 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CSHOW_0946 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CSHOW_0998 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CSHOW_0999 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CSHOW_0538 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CSHOW_1641 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CSHOW_1820 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CSHOW_1819 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CSHOW_0377 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_0800 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CSHOW_0341 putative DUF2088 domain protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CSHOW_1814 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CSHOW_1022 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CSHOW_0570 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_1912 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CSHOW_1911 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CSHOW_0920 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CSHOW_1472 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1471 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1473 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CSHOW_0571 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CSHOW_1134 putative membrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CSHOW_1504 leuA; 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:csho00630]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_1857 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CSHOW_1065 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CSHOW_1242 gycolate oxidase, subunit GlcD-related protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D CSHOW_0492 anaerobic glycerol-3-phosphate dehydrogenase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D CSHOW_1208 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D CSHOW_1723 HAD-superfamily hydrolase, subfamily IA, probable phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CSHOW_1140 putative phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_0534 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CSHOW_0241 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CSHOW_0336 ttdA; L-tartrate dehydratase, subunit alpha K03779 ttdA; L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32]
D CSHOW_0335 ttdB; L-tartrate dehydratase, subunit beta K03780 ttdB; L(+)-tartrate dehydratase beta subunit [EC:4.2.1.32]
D CSHOW_1801 fdhF; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CSHOW_0454 fdhA; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CSHOW_1800 fdhG; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CSHOW_0455 fdhB; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CSHOW_1764 fdhC; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:csho00640]
D CSHOW_0998 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CSHOW_0999 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CSHOW_1641 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CSHOW_1820 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CSHOW_1819 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CSHOW_0377 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CSHOW_1065 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism [PATH:csho00650]
D CSHOW_1472 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1471 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1473 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CSHOW_1721 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CSHOW_0945 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CSHOW_0946 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CSHOW_1001 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CSHOW_1002 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:csho00660]
D CSHOW_1001 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CSHOW_1002 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CSHOW_1870 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CSHOW_0848 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CSHOW_0849 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D CSHOW_1590 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:csho00190]
D CSHOW_0725 hypothetical protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CSHOW_1472 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1471 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1473 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CSHOW_1630 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CSHOW_1631 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CSHOW_1632 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CSHOW_1736 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CSHOW_1735 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CSHOW_1734 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CSHOW_1733 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CSHOW_2040 cioA; cyanide-insensitive cytochrome oxidase CioAB, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CSHOW_2041 cioB; cyanide-insensitive cytochrome oxidase CioAB, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CSHOW_1555 cccA1; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CSHOW_1556 cccA2; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CSHOW_0357 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CSHOW_0359 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CSHOW_0358 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CSHOW_0356 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CSHOW_0360 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CSHOW_1106 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CSHOW_0354 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CSHOW_0355 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CSHOW_0563 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CSHOW_0630 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CSHOW_1267 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CSHOW_0810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:csho00710]
D CSHOW_1591 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CSHOW_1592 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CSHOW_1215 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CSHOW_1947 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CSHOW_0671 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CSHOW_1590 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CSHOW_1273 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CSHOW_0260 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CSHOW_0571 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CSHOW_1814 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:csho00720]
D CSHOW_1721 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CSHOW_1022 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CSHOW_0570 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_1912 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CSHOW_1911 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CSHOW_0920 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CSHOW_1472 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1471 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CSHOW_1473 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CSHOW_0945 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CSHOW_0946 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CSHOW_0947 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CSHOW_0944 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CSHOW_0941 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CSHOW_1065 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CSHOW_1641 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CSHOW_1820 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CSHOW_1819 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CSHOW_0377 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CSHOW_0319 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CSHOW_0674 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CSHOW_0999 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CSHOW_0998 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:csho00680]
D CSHOW_1801 fdhF; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CSHOW_0454 fdhA; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CSHOW_1800 fdhG; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CSHOW_0455 fdhB; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CSHOW_1764 fdhC; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CSHOW_0456 fdhH; formate dehydrogenase H, selenocysteine-containing K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D CSHOW_0534 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_1215 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CSHOW_1710 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_0197 molybdopterin-containing oxidoreductase IV, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_0327 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_1070 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_1264 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_0998 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CSHOW_0999 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CSHOW_1645 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CSHOW_0586 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CSHOW_0284 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CSHOW_0259 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:csho00910]
D CSHOW_1440 napA; periplasmic nitrate reductase NapAB, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D CSHOW_1437 napB; periplasmic nitrate reductase NapAB, small subunit, periplasmic diheme cytochrome c550 protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D CSHOW_0251 nrfA; formate-dependent nitrite reductase NrfAH, periplasmic pentaheme cytochrome c subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D CSHOW_0250 nrfH; formate-dependent nitrite reductase NrfAH, membrane-bound tetraheme cytochrome c subunit K15876 nrfH; cytochrome c nitrite reductase small subunit
D CSHOW_0119 norZ; nitric oxide reductase, monomeric type K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D CSHOW_0473 nosZ; nitrous oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D CSHOW_1896 putative hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CSHOW_0626 npd; nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CSHOW_1694 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_1931 canB; carbonic anhydrase, beta class K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:csho00920]
D CSHOW_1396 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CSHOW_1858 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CSHOW_1705 putative NADH dehydrogenase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D CSHOW_0996 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CSHOW_0995 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CSHOW_1391 putative thiosulfate/polysulfide reductase, molybdenum-binding subunit K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D CSHOW_1275 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CSHOW_1276 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CSHOW_0820 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:csho00061]
D CSHOW_1641 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CSHOW_1820 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CSHOW_1819 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CSHOW_0377 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CSHOW_1357 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1358 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1643 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_0368 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CSHOW_0288 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CSHOW_1366 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CSHOW_1363 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1642 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1364 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_1644 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_0229 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CSHOW_1589 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CSHOW_0157 long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:csho00071]
D CSHOW_0157 long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CSHOW_0463 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-[acp] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:csho00074]
D CSHOW_1060 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CSHOW_1357 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1358 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1643 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_0368 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:csho00121]
D CSHOW_0956 short-chain dehydrogenase/reductase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:csho00561]
D CSHOW_0241 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_0289 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CSHOW_0297 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CSHOW_0987 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CSHOW_1686 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:csho00564]
D CSHOW_1104 gpsA; glycerol 3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CSHOW_0297 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CSHOW_0987 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CSHOW_1686 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CSHOW_0246 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CSHOW_0463 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-[acp] synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D CSHOW_1866 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CSHOW_1892 putative CDP-diglyceride synthetase/phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CSHOW_1505 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CSHOW_1506 phosphatidylserine decarboxylase-related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CSHOW_0661 psd; phosphatidylserine decarboxylase, proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CSHOW_0954 pgsA; phosphatidylglycerophosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CSHOW_1395 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D CSHOW_1770 HAD-superfamily hydrolase, subfamily IB K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:csho00565]
D CSHOW_0246 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D CSHOW_0246 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D CSHOW_0246 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:csho00592]
D CSHOW_0246 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D CSHOW_1701 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:csho00230]
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CSHOW_0410 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CSHOW_0202 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CSHOW_0556 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CSHOW_0138 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CSHOW_1179 purL; phosphoribosylformylglycinamidine synthase PurLQS, PurL subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CSHOW_0990 purS; phosphoribosylformylglycinamidine synthase PurLQS, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CSHOW_0989 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CSHOW_0056 purM; phosphoribosylformylglycinamide cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CSHOW_0706 purE; 5-aminoimidazole ribonucleotide (AIR) carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CSHOW_0991 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CSHOW_0013 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CSHOW_1176 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CSHOW_0669 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CSHOW_0192 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CSHOW_0249 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CSHOW_1613 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CSHOW_0821 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CSHOW_0292 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CSHOW_1771 putative dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CSHOW_1376 putative nucleotide phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CSHOW_0548 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CSHOW_1603 gmk; deoxyguanylate kinase / guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CSHOW_0012 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CSHOW_2027 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CSHOW_1921 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CSHOW_0624 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CSHOW_0301 gppA; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CSHOW_1744 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CSHOW_1280 metallophosphatase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CSHOW_0632 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CSHOW_1087 HIT family hydrolase, FHIT branch K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CSHOW_1396 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:csho00240]
D CSHOW_0234 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CSHOW_1740 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CSHOW_1097 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CSHOW_1098 pyrC2; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CSHOW_0959 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CSHOW_1937 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CSHOW_1490 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CSHOW_0622 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CSHOW_0292 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CSHOW_0729 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CSHOW_2039 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CSHOW_1464 hypothetical protein K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CSHOW_0192 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CSHOW_0249 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CSHOW_1815 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CSHOW_1280 metallophosphatase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CSHOW_1921 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CSHOW_1830 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CSHOW_0012 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CSHOW_2027 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CSHOW_1009 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CSHOW_2053 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CSHOW_0055 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CSHOW_1085 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:csho00250]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_1717 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0724 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0841 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CSHOW_2028 hydrolase, carbon-nitrogen family K13566 NIT2; omega-amidase [EC:3.5.1.3]
D CSHOW_0722 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CSHOW_1031 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CSHOW_0576 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CSHOW_1744 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CSHOW_0013 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CSHOW_1097 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CSHOW_1694 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_0234 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CSHOW_1740 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CSHOW_0989 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CSHOW_1380 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CSHOW_0202 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:csho00260]
D CSHOW_0770 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CSHOW_0413 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CSHOW_0211 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CSHOW_0382 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CSHOW_0805 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CSHOW_0534 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CSHOW_0241 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CSHOW_1645 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CSHOW_0586 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CSHOW_0284 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CSHOW_0259 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CSHOW_1085 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CSHOW_1505 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CSHOW_1081 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CSHOW_0306 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CSHOW_0307 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:csho00270]
D CSHOW_1275 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CSHOW_1276 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CSHOW_0088 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CSHOW_2007 putative PLP-dependent C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CSHOW_0062 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CSHOW_1293 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CSHOW_0369 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CSHOW_1613 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CSHOW_0549 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CSHOW_1712 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CSHOW_0770 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CSHOW_0413 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CSHOW_0211 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CSHOW_0382 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CSHOW_0820 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CSHOW_1142 metY; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CSHOW_0186 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0942 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CSHOW_0586 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CSHOW_0284 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:csho00280]
D CSHOW_0186 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:csho00290]
D CSHOW_1081 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CSHOW_1870 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CSHOW_0848 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CSHOW_0849 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CSHOW_1001 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CSHOW_1002 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CSHOW_0753 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CSHOW_2044 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CSHOW_0186 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CSHOW_1134 putative membrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CSHOW_1504 leuA; 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:csho00300]
D CSHOW_0211 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CSHOW_0770 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CSHOW_0413 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CSHOW_0957 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CSHOW_0203 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CSHOW_0266 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CSHOW_0916 ddh; meso-diaminopimelate D-dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D CSHOW_1956 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CSHOW_0972 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:csho00310]
D CSHOW_1162 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:csho00220]
D CSHOW_0489 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CSHOW_1031 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CSHOW_0576 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CSHOW_0989 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_0234 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CSHOW_1740 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CSHOW_1694 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:csho00330]
D CSHOW_1007 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CSHOW_1227 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CSHOW_1224 aguB; N-carbamoylputrescine amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D CSHOW_1777 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D CSHOW_1765 nspC; carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_0083 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CSHOW_0078 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CSHOW_0081 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_1162 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:csho00340]
D CSHOW_0524 hisG(S); ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CSHOW_0188 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D CSHOW_1510 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CSHOW_1511 hisH; imidazole glycerol phosphate synthase HisFH, HisH subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CSHOW_0019 hisF; imidazole glycerol phosphate synthase HisFH, HisF subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CSHOW_0640 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CSHOW_0703 hisJ; histidinol-phosphate phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D CSHOW_1211 hisD; histidinal dehydrogenase / histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:csho00350]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:csho00360]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CSHOW_1162 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CSHOW_0971 alpha/beta hydrolase family protein K05714 mhpC; 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase [EC:3.7.1.14]
C 00380 Tryptophan metabolism [PATH:csho00380]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_1208 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:csho00400]
D CSHOW_1094 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CSHOW_0904 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CSHOW_0396 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CSHOW_0537 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CSHOW_1498 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CSHOW_0582 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CSHOW_1991 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CSHOW_0311 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CSHOW_0309 trpDG; anthranilate phosphoribosyltransferase / anthranilate synthase component II K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D CSHOW_0308 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D CSHOW_1088 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CSHOW_0306 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CSHOW_0307 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CSHOW_0267 pheA; chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CSHOW_0386 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:csho00410]
D CSHOW_1955 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CSHOW_1577 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CSHOW_0055 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
C 00430 Taurine and hypotaurine metabolism [PATH:csho00430]
D CSHOW_0999 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CSHOW_0998 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:csho00450]
D CSHOW_0088 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CSHOW_2007 putative PLP-dependent C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CSHOW_0062 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CSHOW_0207 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CSHOW_1093 NADPH oxidoreductase, putative flavodoxin quinone reductase FqrB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CSHOW_1396 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CSHOW_1762 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CSHOW_1805 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CSHOW_0656 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:csho00460]
D CSHOW_0841 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CSHOW_0534 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:csho00470]
D CSHOW_0480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CSHOW_1162 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CSHOW_0969 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CSHOW_0989 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CSHOW_1918 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CSHOW_1647 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CSHOW_1717 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0724 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0266 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:csho00480]
D CSHOW_0667 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CSHOW_1220 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CSHOW_0941 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:csho00540]
D CSHOW_0230 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CSHOW_0384 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CSHOW_1003 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CSHOW_0255 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CSHOW_0253 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CSHOW_0803 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CSHOW_0022 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CSHOW_1495 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CSHOW_0641 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CSHOW_0806 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CSHOW_0713 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CSHOW_1534 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CSHOW_1687 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CSHOW_1551 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CSHOW_1552 waaE; D,D-heptose 1-phosphate adenosyltransferase / 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CSHOW_1554 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CSHOW_1553 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CSHOW_1533 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CSHOW_1547 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CSHOW_1545 glycosyltransferase, family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CSHOW_1536 waaQ; heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CSHOW_1546 glycosyltransferase, family 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:csho00541]
D CSHOW_1426 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CSHOW_1527 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CSHOW_1526 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CSHOW_1529 UDP-glucuronic acid epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D CSHOW_1054 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CSHOW_1842 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CSHOW_1843 GDP-mannose 4,6-dehydratase K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135]
D CSHOW_0883 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CSHOW_1831 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CSHOW_1832 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CSHOW_1836 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CSHOW_1835 pseG; UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranosyl transferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D CSHOW_1837 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CSHOW_1833 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CSHOW_1513 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CSHOW_1524 polysaccharide biosynthesis protein, nucleotide sugar dehydrogenase, TviB family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D CSHOW_1278 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00550 Peptidoglycan biosynthesis [PATH:csho00550]
D CSHOW_1015 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CSHOW_1882 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CSHOW_0518 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CSHOW_1647 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CSHOW_1956 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CSHOW_0969 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CSHOW_0972 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CSHOW_0880 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CSHOW_1945 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CSHOW_1646 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CSHOW_0981 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CSHOW_0728 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CSHOW_0919 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CSHOW_0646 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CSHOW_1313 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:csho00552]
D CSHOW_1945 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:csho00543]
D CSHOW_2045 membrane bound O-acyl transferase, MBOAT family K19294 algI; alginate O-acetyltransferase complex protein AlgI
D CSHOW_1254 membrane bound O-acyl transferase, MBOAT family K19294 algI; alginate O-acetyltransferase complex protein AlgI
D CSHOW_1275 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:csho00730]
D CSHOW_1399 thiC; HMP-P synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CSHOW_1940 thiD; hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CSHOW_0603 hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CSHOW_0391 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CSHOW_0127 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CSHOW_1348 thiH; ThiGH complex, tyrosine lyase subunit ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CSHOW_0272 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CSHOW_1349 thiG; ThiGH complex, thiazole synthase subunit ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CSHOW_0602 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CSHOW_1130 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CSHOW_0632 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:csho00740]
D CSHOW_0487 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CSHOW_1075 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CSHOW_0389 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CSHOW_1492 ribH; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, beta subunit) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CSHOW_1614 ribE; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CSHOW_0776 ribF; bifunctional riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CSHOW_1011 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:csho00750]
D CSHOW_0284 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CSHOW_0805 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:csho00760]
D CSHOW_1487 pncBI; nicotinate phosphoribosyltransferase, subgroup A K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CSHOW_0192 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CSHOW_0249 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CSHOW_1593 nadD; nicotinate-mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CSHOW_0801 nadE; NAD synthetase, NH3-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D CSHOW_0824 cinA; competence/damage-inducible domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CSHOW_0634 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:csho00770]
D CSHOW_1001 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CSHOW_1002 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CSHOW_0753 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CSHOW_2044 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CSHOW_1447 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CSHOW_1577 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CSHOW_0525 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CSHOW_0882 dfp; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CSHOW_1010 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CSHOW_0057 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CSHOW_1060 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CSHOW_0186 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CSHOW_0055 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CSHOW_1955 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:csho00780]
D CSHOW_1366 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CSHOW_1363 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1642 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1364 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_1644 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_0229 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CSHOW_1589 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CSHOW_1854 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CSHOW_0351 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:csho00790]
D CSHOW_0131 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CSHOW_0711 putative NIF3 domain protein K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D CSHOW_0298 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CSHOW_0398 folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CSHOW_0773 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CSHOW_1283 folC; bifunctional folypolyglutamate synthetase / dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CSHOW_0487 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CSHOW_1075 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CSHOW_0221 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CSHOW_0222 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CSHOW_0658 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CSHOW_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CSHOW_0223 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CSHOW_2008 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CSHOW_1767 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CSHOW_0908 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CSHOW_1769 moeA2; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CSHOW_1014 moeA1; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CSHOW_0247 mobA; molybdenum cofactor guanylyltransferase protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:csho00670]
D CSHOW_0319 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CSHOW_0674 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CSHOW_0534 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CSHOW_0138 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CSHOW_1176 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CSHOW_0350 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CSHOW_2053 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CSHOW_1324 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:csho00860]
D CSHOW_1813 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0649 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_1136 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CSHOW_0676 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CSHOW_0488 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CSHOW_1133 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CSHOW_0555 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CSHOW_0429 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CSHOW_0491 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D CSHOW_0093 hypothetical membrane protein (UPF0093 domain) K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D CSHOW_0733 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:csho00130]
D CSHOW_0226 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CSHOW_1131 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D CSHOW_1011 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CSHOW_0282 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CSHOW_0243 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D CSHOW_1809 mqnA2; 6-amino-6-deoxyfutalosine synthase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D CSHOW_1378 menaquinone biosynthesis protein, SCO4494 family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D CSHOW_0395 metallo-dependent hydrolase, subgroup D K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D CSHOW_0369 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CSHOW_0690 mqnC; dehypoxanthinylfutalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D CSHOW_1880 mqnD; 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:csho00900]
D CSHOW_0272 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CSHOW_1865 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CSHOW_1398 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D CSHOW_1303 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CSHOW_1252 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CSHOW_0583 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CSHOW_1011 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CSHOW_1951 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CSHOW_1137 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CSHOW_0880 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CSHOW_1947 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures [PATH:csho01054]
D CSHOW_1717 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0724 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:csho00332]
D CSHOW_0078 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CSHOW_0081 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:csho00261]
D CSHOW_1396 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CSHOW_0770 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CSHOW_0413 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CSHOW_0957 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CSHOW_0203 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D CSHOW_1055 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:csho00401]
D CSHOW_0386 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CSHOW_0311 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CSHOW_0368 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CSHOW_1364 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_1644 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_1589 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CSHOW_1357 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1358 acyl carrier protein K02078 acpP; acyl carrier protein
D CSHOW_1643 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:csho00999]
D CSHOW_1293 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CSHOW_0537 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D CSHOW_1305 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CSHOW_0175 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation
D CSHOW_1011 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:csho00625]
D CSHOW_0173 aldB; aldehyde dehydrogenase B K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D CSHOW_1305 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CSHOW_0175 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CSHOW_1305 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CSHOW_0175 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:csho03020]
D CSHOW_0507 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CSHOW_0508 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CSHOW_1960 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CSHOW_0623 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:csho03010]
D CSHOW_0584 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CSHOW_1608 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CSHOW_1980 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CSHOW_1961 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CSHOW_1969 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CSHOW_0749 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CSHOW_0511 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CSHOW_1972 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CSHOW_1726 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CSHOW_1987 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CSHOW_1962 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CSHOW_0510 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CSHOW_1963 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CSHOW_1973 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CSHOW_0792 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CSHOW_0716 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CSHOW_1977 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CSHOW_0747 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CSHOW_1982 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CSHOW_0097 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CSHOW_0144 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CSHOW_0504 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CSHOW_1983 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CSHOW_1986 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CSHOW_1985 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CSHOW_1974 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CSHOW_1971 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CSHOW_0506 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CSHOW_1032 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CSHOW_0505 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CSHOW_0503 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CSHOW_1727 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CSHOW_1976 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CSHOW_1968 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CSHOW_1979 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CSHOW_1959 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CSHOW_1970 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CSHOW_0720 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CSHOW_0059 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CSHOW_0346 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CSHOW_1981 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CSHOW_1984 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CSHOW_1975 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CSHOW_0262 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CSHOW_0347 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CSHOW_1271 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CSHOW_1978 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CSHOW_0217 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CSHOW_0290 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CSHOW_0499 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CSHOW_1190 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CSHOW_0060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CSHOW_1964 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CSHOW_1319 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CSHOW_1316 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:csho00970]
D CSHOW_0038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1317 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1371 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1902 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_0513 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_1021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0167 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0168 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0432 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CSHOW_0695 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CSHOW_0698 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CSHOW_0041 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CSHOW_1078 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CSHOW_0808 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CSHOW_0161 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0693 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0700 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_1013 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_0496 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_0166 tRNA-His K14226 tRNA-His; tRNA His
D CSHOW_1318 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_1372 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_1903 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0169 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0562 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0871 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0694 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0697 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0701 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0201 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_0614 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_1077 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_1648 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CSHOW_0165 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CSHOW_1488 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_1942 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_0494 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CSHOW_0497 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CSHOW_0500 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CSHOW_0495 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CSHOW_0070 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_0696 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_0699 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_1813 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0649 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0822 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CSHOW_1105 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CSHOW_0529 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CSHOW_0731 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CSHOW_0633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CSHOW_0710 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CSHOW_0856 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CSHOW_0069 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CSHOW_1501 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CSHOW_1805 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CSHOW_0961 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CSHOW_0656 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CSHOW_0350 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CSHOW_0917 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CSHOW_1286 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CSHOW_0823 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CSHOW_0533 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CSHOW_1601 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CSHOW_1135 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CSHOW_1745 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_1008 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_0580 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CSHOW_0581 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CSHOW_0625 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CSHOW_1499 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:csho03060]
D CSHOW_1967 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CSHOW_0501 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CSHOW_1934 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CSHOW_1289 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CSHOW_1288 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CSHOW_1290 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CSHOW_1187 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CSHOW_1154 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CSHOW_0715 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CSHOW_1326 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CSHOW_1602 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CSHOW_0762 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CSHOW_0761 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D CSHOW_0673 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CSHOW_0095 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:csho04122]
D CSHOW_0127 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CSHOW_1996 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CSHOW_0406 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CSHOW_1767 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CSHOW_0223 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CSHOW_1766 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D CSHOW_2008 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CSHOW_0908 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CSHOW_1350 thiS; thiamin biosynthesis protein K03154 thiS; sulfur carrier protein
D CSHOW_0391 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:csho03018]
D CSHOW_0769 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CSHOW_0560 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CSHOW_0751 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CSHOW_1563 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CSHOW_1323 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CSHOW_0021 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CSHOW_0789 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CSHOW_1232 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CSHOW_1267 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CSHOW_0810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:csho03030]
D CSHOW_1274 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CSHOW_0593 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CSHOW_1565 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CSHOW_0772 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CSHOW_0750 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CSHOW_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CSHOW_1249 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CSHOW_1995 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_1993 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CSHOW_1990 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:csho03410]
D CSHOW_1217 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CSHOW_0045 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CSHOW_0516 tag; DNA-3-methyladenine glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CSHOW_1720 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D CSHOW_1192 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CSHOW_0102 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CSHOW_0159 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CSHOW_2033 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:csho03420]
D CSHOW_1282 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CSHOW_0316 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CSHOW_1262 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CSHOW_0545 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CSHOW_1300 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0973 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:csho03430]
D CSHOW_0520 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CSHOW_1300 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0973 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0281 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CSHOW_0819 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CSHOW_2033 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_0593 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CSHOW_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CSHOW_1565 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CSHOW_0750 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CSHOW_0772 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CSHOW_1274 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:csho03440]
D CSHOW_2033 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_0540 recR; recombination protein K06187 recR; recombination protein RecR
D CSHOW_1878 recA; recombinase K03553 recA; recombination protein RecA
D CSHOW_0968 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CSHOW_1445 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CSHOW_2055 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CSHOW_0692 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CSHOW_0593 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CSHOW_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CSHOW_1565 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CSHOW_0750 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CSHOW_0772 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CSHOW_1274 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CSHOW_1257 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CSHOW_0865 putative Rad52/22 family double-strand break repair protein K10873 RAD52; DNA repair and recombination protein RAD52
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:csho02010]
D CSHOW_0449 tupA; tungsten ABC transporter TupABC, periplasmic tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CSHOW_0450 tupB; tungsten ABC transporter TupABC, permease protein K05773 tupB; tungstate transport system permease protein
D CSHOW_0451 tupC; tungsten ABC transporter TupABC, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CSHOW_1637 molybdenum ABC transporter, ModA-like periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1752 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1822 ABC transporter, periplasmic substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1755 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CSHOW_1821 ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CSHOW_1754 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CSHOW_0826 putative iron(III) ABC transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CSHOW_0827 putative iron(III) ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CSHOW_0828 putative iron(III) ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CSHOW_1749 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CSHOW_0966 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CSHOW_0964 lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CSHOW_0965 lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CSHOW_0084 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0085 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0086 amino acid ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D CSHOW_0087 amino acid ABC transporter, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CSHOW_0605 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CSHOW_0608 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CSHOW_0607 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CSHOW_0911 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0912 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0913 metQ3; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0914 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CSHOW_0915 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CSHOW_0112 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CSHOW_0109 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D CSHOW_0110 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CSHOW_1826 cbiM; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CSHOW_1824 cbiQ; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CSHOW_1823 cbiO; Co/Ni ABC transporter CbiKLMQO, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CSHOW_1827 cbiK; Co/Ni ABC transporter CbiKLMQO, periplasmic substrate-binding protein CbiK K10094 cbiK; nickel transport protein
D CSHOW_1825 cbiL; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiL K16915 cbiL; nickel transport protein
D CSHOW_1839 polysaccharide ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D CSHOW_1840 polysaccharide/polyol phosphate ABC transporter, ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CSHOW_0878 putative lipooligosaccharide transport system, permease component (LptF family) K07091 lptF; lipopolysaccharide export system permease protein
D CSHOW_0265 putative lipooligosaccharide transport system, permease component (LptG family) K11720 lptG; lipopolysaccharide export system permease protein
D CSHOW_1028 putative lipooligosaccharide transport system, ATP-binding component (LptB family) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CSHOW_0620 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CSHOW_0619 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CSHOW_0960 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CSHOW_1848 sapD; type I secretion system, ABC transporter, ATP-binding/permease components K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CSHOW_0899 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CSHOW_1414 ABC transporter, ATP-binding/permease protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D CSHOW_0122 ABC transporter, ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:csho03070]
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_1039 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CSHOW_1043 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CSHOW_1258 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CSHOW_1259 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CSHOW_1042 ctsE; transformation system, type II secretion system ATPase CtsE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CSHOW_1289 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CSHOW_1288 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CSHOW_0501 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CSHOW_1934 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CSHOW_1967 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CSHOW_1290 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CSHOW_1187 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CSHOW_1154 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CSHOW_1326 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CSHOW_0715 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CSHOW_1602 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CSHOW_0762 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CSHOW_0761 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:csho02020]
D CSHOW_1952 putative PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1147 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1852 fla; flagellin K02406 fliC; flagellin
D CSHOW_0787 flaC; flagellar secreted protein K02406 fliC; flagellin
D CSHOW_0402 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CSHOW_0885 motP; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CSHOW_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CSHOW_0342 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CSHOW_1302 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CSHOW_1379 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_1481 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CSHOW_1027 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CSHOW_0924 hydC; [NiFe] hydrogenase, cytochrome b subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D CSHOW_0683 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CSHOW_0430 NIT sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_1069 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_0258 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CSHOW_0257 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CSHOW_1509 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CSHOW_0682 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CSHOW_0256 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CSHOW_1924 TRAP dicarboxylate transporter DctPQM, solute-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D CSHOW_1925 TRAP dicarboxylate transporter DctPQM, permease subunit DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D CSHOW_1926 TRAP dicarboxylate transporter DctPQM, permease subunit DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D CSHOW_0996 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CSHOW_0995 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CSHOW_1074 two-component system sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D CSHOW_1630 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CSHOW_1631 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CSHOW_1632 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CSHOW_1555 cccA1; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CSHOW_1556 cccA2; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CSHOW_1736 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CSHOW_1735 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CSHOW_1734 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CSHOW_1733 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CSHOW_2040 cioA; cyanide-insensitive cytochrome oxidase CioAB, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CSHOW_2041 cioB; cyanide-insensitive cytochrome oxidase CioAB, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_1225 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CSHOW_1630 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:csho02024]
D CSHOW_1712 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CSHOW_0311 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CSHOW_1094 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CSHOW_0157 long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CSHOW_0113 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CSHOW_0487 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CSHOW_0389 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CSHOW_0139 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CSHOW_1187 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CSHOW_0501 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CSHOW_1934 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CSHOW_1967 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CSHOW_1290 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CSHOW_1154 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CSHOW_1326 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CSHOW_0715 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:csho02030]
D CSHOW_0430 NIT sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_1069 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_0257 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CSHOW_0258 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CSHOW_1509 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CSHOW_0682 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CSHOW_0256 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CSHOW_0683 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CSHOW_0270 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D CSHOW_0403 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CSHOW_0304 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0404 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0885 motP; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CSHOW_0886 motS; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CSHOW_1213 putative OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:csho02040]
D CSHOW_1312 fliE; flagellar proximal rod protein K02408 fliE; flagellar hook-basal body complex protein FliE
D CSHOW_0269 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CSHOW_0270 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D CSHOW_0271 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CSHOW_0130 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CSHOW_2024 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CSHOW_1059 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CSHOW_0403 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CSHOW_0304 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0404 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0887 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CSHOW_1881 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CSHOW_1605 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CSHOW_0794 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CSHOW_0343 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CSHOW_1012 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CSHOW_1310 flgB; flagellar proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D CSHOW_1311 flgC; flagellar proximal rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D CSHOW_2025 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CSHOW_2026 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CSHOW_2050 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CSHOW_0835 flgG2; flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CSHOW_0837 flgG; flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CSHOW_1000 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CSHOW_1114 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CSHOW_1113 putative protein possible flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CSHOW_1110 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D CSHOW_0874 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CSHOW_0416 flgP; LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP
D CSHOW_0415 flgQ; flagellar-associated protein FlgQ K24346 flgQ; flagellar motility protein FlgQ
D CSHOW_1852 fla; flagellin K02406 fliC; flagellin
D CSHOW_0787 flaC; flagellar secreted protein K02406 fliC; flagellin
D CSHOW_1118 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D CSHOW_1119 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CSHOW_0885 motP; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CSHOW_0886 motS; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CSHOW_1213 putative OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D CSHOW_0084 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0085 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0834 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CSHOW_1027 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CSHOW_0402 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:csho01501]
D CSHOW_1103 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CSHOW_0141 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CSHOW_0140 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CSHOW_0139 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0728 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CSHOW_0646 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CSHOW_1313 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:csho01502]
D CSHOW_0969 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CSHOW_0480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CSHOW_0972 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CSHOW_1646 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CSHOW_0981 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:csho01503]
D CSHOW_1687 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CSHOW_0685 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein)
D CSHOW_0627 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CSHOW_1952 putative PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1147 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_0141 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CSHOW_0140 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0230 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:csho01000]
C 01001 Protein kinases [BR:csho01001]
D CSHOW_1329 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0300 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0541 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0894 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_1149 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0257 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CSHOW_1074 two-component system sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:csho01009]
D CSHOW_1181 hypothetical protein K02183 CALM; calmodulin
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CSHOW_0259 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:csho01002]
D CSHOW_0095 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CSHOW_0879 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CSHOW_0925 hydD; [NiFe] hydrogenase maturation protease HydD K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CSHOW_1617 hycI; hydrogenase maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D CSHOW_0548 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CSHOW_0202 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CSHOW_1380 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CSHOW_0590 DJ-1/PfpI family protein (DUF4066 domain) K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CSHOW_0061 pepD; peptidase D K08659 pepDA; dipeptidase [EC:3.4.-.-]
D CSHOW_1295 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D CSHOW_0204 zinc-dependent peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D CSHOW_0667 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CSHOW_1126 carboxypeptidase G2 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D CSHOW_1483 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CSHOW_1220 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CSHOW_1101 peptidase family M20/M25/M40, putative N-carbamoyl-L-amino acid amidohydrolase K12940 abgA; aminobenzoyl-glutamate utilization protein A
D CSHOW_1966 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CSHOW_0397 pepQ; X-Pro dipeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CSHOW_1610 isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D CSHOW_1507 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CSHOW_0907 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CSHOW_0482 htpX; heat shock protein HtpX, M48 family peptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D CSHOW_0952 RseP-like zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CSHOW_1952 putative PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1147 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_0133 clpP; ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CSHOW_0742 lon; DNA-binding, ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CSHOW_0673 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CSHOW_0992 ctpA; carboxyl-terminal protease family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CSHOW_0394 sppA; signal peptide peptidase protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D CSHOW_1486 pepE1; (alpha)-aspartyl dipeptidase K05995 pepE; dipeptidase E [EC:3.4.13.21]
D CSHOW_0575 peptidase E family protein K05995 pepE; dipeptidase E [EC:3.4.13.21]
D CSHOW_1033 hslV; heat shock protein HslVU, ATP-dependent protease subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CSHOW_0705 collagenase-like peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CSHOW_1525 putative Ecotin domain protein K08276 eco; ecotin
D CSHOW_0918 alpha-2-macroglobulin domain-containing protein K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:csho01003]
D CSHOW_0919 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CSHOW_0728 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CSHOW_1517 pglA; N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D CSHOW_1521 pglH; GalNAc-alpha-(1,4)-GalNAc-alpha-(1, 3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CSHOW_1520 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase K17250 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]
D CSHOW_1519 pglJ; N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:csho01005]
D CSHOW_0230 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CSHOW_0253 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CSHOW_0384 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CSHOW_1003 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CSHOW_0255 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CSHOW_0803 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CSHOW_1534 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CSHOW_0713 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CSHOW_1687 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CSHOW_1495 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CSHOW_0806 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CSHOW_0641 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CSHOW_0022 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CSHOW_1533 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CSHOW_1547 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CSHOW_1546 glycosyltransferase, family 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D CSHOW_1545 glycosyltransferase, family 9 K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CSHOW_1536 waaQ; heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CSHOW_1551 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CSHOW_1554 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CSHOW_1552 waaE; D,D-heptose 1-phosphate adenosyltransferase / 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CSHOW_1553 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:csho01011]
D CSHOW_1015 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CSHOW_1882 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CSHOW_0518 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CSHOW_1647 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CSHOW_1956 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CSHOW_0969 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CSHOW_0480 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CSHOW_1918 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CSHOW_1646 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CSHOW_0981 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CSHOW_1945 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CSHOW_0962 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CSHOW_0728 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CSHOW_0919 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CSHOW_0646 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CSHOW_1313 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CSHOW_0651 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CSHOW_0638 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CSHOW_0940 YceG-like protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CSHOW_0639 rlpA; rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CSHOW_0627 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:csho01004]
D CSHOW_0368 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CSHOW_0288 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CSHOW_1366 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CSHOW_1363 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1642 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CSHOW_1364 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_1644 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CSHOW_0229 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CSHOW_1589 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CSHOW_1701 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D CSHOW_0157 long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CSHOW_0289 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CSHOW_0297 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CSHOW_0987 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:csho01008]
D CSHOW_1717 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D CSHOW_0724 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:csho01006]
D CSHOW_1951 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D CSHOW_1137 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CSHOW_0880 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CSHOW_0227 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CSHOW_0243 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D CSHOW_0226 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:csho01007]
D CSHOW_1813 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0649 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0592 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CSHOW_0625 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CSHOW_1499 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CSHOW_0961 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CSHOW_1601 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CSHOW_0656 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CSHOW_0823 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CSHOW_0917 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CSHOW_1286 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CSHOW_0533 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CSHOW_0633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CSHOW_1745 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_1008 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_0710 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CSHOW_0856 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CSHOW_1501 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CSHOW_1135 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CSHOW_0069 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CSHOW_0731 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CSHOW_0580 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CSHOW_0581 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CSHOW_1006 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CSHOW_0212 aspartate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D CSHOW_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CSHOW_2007 putative PLP-dependent C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CSHOW_0676 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CSHOW_1162 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CSHOW_0186 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CSHOW_0284 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CSHOW_1278 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:csho00194]
D CSHOW_0360 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CSHOW_0359 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CSHOW_0358 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CSHOW_0357 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CSHOW_0356 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CSHOW_0354 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CSHOW_0355 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CSHOW_0563 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CSHOW_1106 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:csho03000]
D CSHOW_0549 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CSHOW_0058 hypothetical protein K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D CSHOW_1145 hspR; heat shock transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D CSHOW_1335 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CSHOW_0532 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CSHOW_0113 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CSHOW_0273 perR; peroxide stress transcriptional regulator PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CSHOW_1706 transcriptional regulator, Crp family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CSHOW_1615 putative Crp/Fnr family transcriptional regulator K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D CSHOW_0793 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CSHOW_0351 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CSHOW_1751 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D CSHOW_0124 molybdenum-pterin binding domain-containing protein K02019 modE; molybdate transport system regulatory protein
D CSHOW_0443 molybdenum-pterin binding domain-containing protein K02019 modE; molybdate transport system regulatory protein
D CSHOW_0445 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D CSHOW_0330 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D CSHOW_0092 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D CSHOW_0928 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CSHOW_0353 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CSHOW_0791 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D CSHOW_1452 putative transcriptional regulator K07733 alpA; prophage regulatory protein
D CSHOW_0375 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:csho03021]
D CSHOW_1960 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CSHOW_0507 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CSHOW_0508 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CSHOW_0623 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CSHOW_0834 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CSHOW_1027 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CSHOW_0402 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CSHOW_1566 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CSHOW_1491 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CSHOW_0502 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CSHOW_0375 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CSHOW_0254 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CSHOW_1563 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:csho03019]
D CSHOW_1992 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CSHOW_0021 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CSHOW_1323 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CSHOW_0751 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CSHOW_0560 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CSHOW_1563 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CSHOW_0789 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CSHOW_1232 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CSHOW_1267 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CSHOW_0810 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CSHOW_0769 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CSHOW_1302 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:csho03011]
D CSHOW_0584 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CSHOW_1608 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CSHOW_1980 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CSHOW_1961 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CSHOW_1969 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CSHOW_0749 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CSHOW_0511 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CSHOW_1972 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CSHOW_1726 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CSHOW_1987 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CSHOW_1962 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CSHOW_0510 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CSHOW_1963 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CSHOW_1973 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CSHOW_0792 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CSHOW_0716 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CSHOW_1977 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CSHOW_0747 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CSHOW_1982 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CSHOW_0097 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CSHOW_0144 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CSHOW_0504 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CSHOW_1983 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CSHOW_1986 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CSHOW_1985 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CSHOW_1974 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CSHOW_1971 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CSHOW_1032 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CSHOW_0505 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CSHOW_0503 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CSHOW_0506 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CSHOW_1727 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CSHOW_1976 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CSHOW_1968 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CSHOW_1979 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CSHOW_1959 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CSHOW_1970 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CSHOW_0720 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CSHOW_0059 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CSHOW_0346 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CSHOW_1981 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CSHOW_1984 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CSHOW_1975 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CSHOW_0347 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CSHOW_1271 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CSHOW_1978 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CSHOW_0217 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CSHOW_0290 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CSHOW_0499 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CSHOW_1190 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CSHOW_0060 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CSHOW_1964 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CSHOW_0262 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CSHOW_1319 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CSHOW_1316 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:csho03009]
D CSHOW_1992 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CSHOW_1035 era; GTP-binding protein K03595 era; GTPase
D CSHOW_0348 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D CSHOW_0375 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CSHOW_1566 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CSHOW_1491 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CSHOW_0502 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CSHOW_0020 rsmA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CSHOW_0218 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CSHOW_0486 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CSHOW_1165 rsmH; 16S rRNA m4C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CSHOW_0216 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CSHOW_0775 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CSHOW_0215 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CSHOW_0376 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CSHOW_0017 rlmN; 23S rRNA m2A2503 methyltransferase / tRNA m2A37 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CSHOW_0023 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CSHOW_0014 23S rRNA pseudouridine synthase, RluD family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CSHOW_0616 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CSHOW_0714 rluA; 23S rRNA and tRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CSHOW_0718 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D CSHOW_1576 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CSHOW_1508 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CSHOW_0756 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CSHOW_1497 engA; GTP-binding protein K03977 engA; GTPase
D CSHOW_0624 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CSHOW_0379 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CSHOW_0378 putative DUF150 domain protein K09748 rimP; ribosome maturation factor RimP
D CSHOW_1594 rsfS; ribosomal silencing factor K09710 ybeB; ribosome-associated protein
D CSHOW_0659 metal-dependent hydrolase (UPF0054 domain) K07042 ybeY; probable rRNA maturation factor
D CSHOW_0735 raiA; translation inhibitor protein RaiA K05808 hpf; ribosome hibernation promoting factor
D CSHOW_0666 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:csho03016]
D CSHOW_0852 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2' nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CSHOW_1813 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0649 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_1135 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CSHOW_0823 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CSHOW_1286 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CSHOW_0656 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CSHOW_1601 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CSHOW_0533 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CSHOW_0633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CSHOW_0731 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CSHOW_0069 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CSHOW_1501 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CSHOW_0961 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CSHOW_0917 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CSHOW_1745 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_1008 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CSHOW_0580 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CSHOW_0581 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CSHOW_0625 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CSHOW_1499 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CSHOW_0579 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CSHOW_0618 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CSHOW_0877 truA; tRNA pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CSHOW_1301 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CSHOW_1129 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D CSHOW_0127 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CSHOW_0227 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CSHOW_1185 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CSHOW_1628 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CSHOW_1762 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CSHOW_1858 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CSHOW_1189 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CSHOW_0710 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CSHOW_0856 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CSHOW_0592 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D CSHOW_1056 aminoacyl-tRNA deacylase, YbaK family K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D CSHOW_0044 YbaK-like protein YeaK K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D CSHOW_0373 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CSHOW_1568 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CSHOW_0777 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CSHOW_0798 cmoB; tRNA (cmo5U34)-carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D CSHOW_1083 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CSHOW_0719 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CSHOW_0854 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CSHOW_1091 tRNA m6A37 methyltransferase TrmN6 K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CSHOW_1996 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CSHOW_0406 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CSHOW_0370 adenine nucleotide alpha hydrolase, possible tRNA 2-thiocytidine biosynthesis protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CSHOW_0628 mnmC; bifunctional 5-methylaminomethyl-2-thiouridine-forming methyltransferase / FAD-dependent demodification enzyme K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CSHOW_0760 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CSHOW_0658 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CSHOW_0221 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CSHOW_0222 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CSHOW_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CSHOW_0228 putative DUF208 domain protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D CSHOW_0902 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CSHOW_1575 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CSHOW_1860 tsaD; N6-L-threonylcarbamoyladenine synthase, TsaD subunit K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CSHOW_1029 tsaE; N6-L-threonylcarbamoyladenine synthase, TsaE subunit K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CSHOW_0248 dinucleotide-utilizing enzyme, molybdopterin/thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CSHOW_0751 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CSHOW_0560 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:csho03012]
D CSHOW_0380 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CSHOW_0068 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CSHOW_1607 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CSHOW_0498 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CSHOW_0512 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CSHOW_1804 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D CSHOW_0098 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CSHOW_1936 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D CSHOW_1201 hemK; protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CSHOW_0263 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CSHOW_1965 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CSHOW_0588 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D CSHOW_1578 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:csho03110]
D CSHOW_1308 clpA; ATP-dependent Clp protease, ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CSHOW_0993 clpB; ATP-dependent Clp protease, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CSHOW_0231 clpX; ATP-dependent ClpXP protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CSHOW_1034 hslU; heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CSHOW_0789 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CSHOW_1232 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CSHOW_0543 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CSHOW_1025 putative DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D CSHOW_1146 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CSHOW_1177 DnaJ-like membrane chaperone protein (N-terminal terB-like domain) K05801 djlA; DnaJ like chaperone protein
D CSHOW_0790 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CSHOW_1233 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CSHOW_1952 putative PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1147 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CSHOW_1507 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CSHOW_0907 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CSHOW_1106 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CSHOW_0477 copper-binding protein (DUF461 domain) K09796 pccA; periplasmic copper chaperone A
D CSHOW_0936 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CSHOW_0932 hypB; hydrogenase nickel insertion protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CSHOW_1480 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CSHOW_1167 putative periplasmic folding chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CSHOW_0034 FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D CSHOW_0367 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CSHOW_1216 peb4; SurA-like chaperone / peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CSHOW_0209 trx; thioredoxin K03671 TXN; thioredoxin
D CSHOW_1803 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CSHOW_0809 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:csho04131]
D CSHOW_0292 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CSHOW_1181 hypothetical protein K02183 CALM; calmodulin
D CSHOW_1592 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CSHOW_0538 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CSHOW_1333 putative lipid-binding protein (SYLF/DUF500 domain) K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1
C 04121 Ubiquitin system
C 03051 Proteasome [BR:csho03051]
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:csho03032]
D CSHOW_1993 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CSHOW_0549 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CSHOW_1157 putative helicase, PIF1 family (DUF889 domain) K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CSHOW_0872 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CSHOW_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CSHOW_1249 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CSHOW_1995 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_0593 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CSHOW_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CSHOW_0750 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CSHOW_0772 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CSHOW_1274 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CSHOW_1565 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CSHOW_1990 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CSHOW_0417 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CSHOW_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CSHOW_1853 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:csho03036]
D CSHOW_0549 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CSHOW_1992 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CSHOW_1181 hypothetical protein K02183 CALM; calmodulin
D CSHOW_0872 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CSHOW_1146 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CSHOW_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CSHOW_1428 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D CSHOW_1168 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CSHOW_0619 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CSHOW_1313 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CSHOW_0875 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CSHOW_0980 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CSHOW_0620 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CSHOW_1169 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CSHOW_0627 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CSHOW_0141 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CSHOW_0232 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CSHOW_0233 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CSHOW_0422 putative membrane protein K03571 mreD; rod shape-determining protein MreD
D CSHOW_0615 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D CSHOW_0352 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CSHOW_0353 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CSHOW_1628 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CSHOW_0486 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CSHOW_0994 xerH; integrase/recombinase K04763 xerD; integrase/recombinase XerD
D CSHOW_1400 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CSHOW_0644 engB; ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:csho03400]
D CSHOW_1066 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CSHOW_0045 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CSHOW_1217 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CSHOW_0865 putative Rad52/22 family double-strand break repair protein K10873 RAD52; DNA repair and recombination protein RAD52
D CSHOW_1720 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D CSHOW_1192 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CSHOW_0516 tag; DNA-3-methyladenine glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CSHOW_0102 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CSHOW_0159 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CSHOW_0688 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D CSHOW_2033 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CSHOW_0774 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CSHOW_0316 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CSHOW_1262 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CSHOW_0545 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CSHOW_1300 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0973 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CSHOW_0507 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CSHOW_0508 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CSHOW_1960 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CSHOW_0623 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CSHOW_1282 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CSHOW_0520 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CSHOW_0281 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CSHOW_0819 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CSHOW_0593 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CSHOW_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CSHOW_0750 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CSHOW_0772 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CSHOW_1274 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CSHOW_1565 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_0552 vsr; DNA G:T-mismatch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D CSHOW_1878 recA; recombinase K03553 recA; recombination protein RecA
D CSHOW_0968 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CSHOW_1445 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CSHOW_2055 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CSHOW_1257 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CSHOW_1049 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms
D CSHOW_0692 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CSHOW_0540 recR; recombination protein K06187 recR; recombination protein RecR
D CSHOW_0635 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CSHOW_1998 cas1; CRISPR/Cas system-associated endonuclease Cas1, type I-B/HMARI K15342 cas1; CRISP-associated protein Cas1
D CSHOW_0417 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CSHOW_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CSHOW_1853 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CSHOW_0872 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CSHOW_1550 dinP; DNA polymerase IV K03502 umuC; DNA polymerase V
D CSHOW_0012 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CSHOW_2027 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:csho03029]
D CSHOW_1631 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CSHOW_0380 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CSHOW_0068 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CSHOW_1607 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CSHOW_0498 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CSHOW_0512 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CSHOW_1035 era; GTP-binding protein K03595 era; GTPase
D CSHOW_0625 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CSHOW_1286 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CSHOW_0633 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CSHOW_1601 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CSHOW_0822 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CSHOW_1105 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CSHOW_0529 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CSHOW_1157 putative helicase, PIF1 family (DUF889 domain) K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CSHOW_0748 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CSHOW_0387 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CSHOW_0789 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CSHOW_0790 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CSHOW_1232 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CSHOW_1233 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CSHOW_0543 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CSHOW_1025 putative DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D CSHOW_0127 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CSHOW_1400 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CSHOW_1187 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CSHOW_0475 cytochrome oxidase biogenesis protein, Sco1/SenC/PrrC family K07152 SCO1; protein SCO1
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:csho02000]
D CSHOW_0960 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CSHOW_1848 sapD; type I secretion system, ABC transporter, ATP-binding/permease components K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CSHOW_0899 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CSHOW_1414 ABC transporter, ATP-binding/permease protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D CSHOW_0122 ABC transporter, ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D CSHOW_0784 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CSHOW_1637 molybdenum ABC transporter, ModA-like periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1752 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1822 ABC transporter, periplasmic substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CSHOW_1755 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CSHOW_1821 ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CSHOW_1754 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CSHOW_0449 tupA; tungsten ABC transporter TupABC, periplasmic tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CSHOW_0450 tupB; tungsten ABC transporter TupABC, permease protein K05773 tupB; tungstate transport system permease protein
D CSHOW_0451 tupC; tungsten ABC transporter TupABC, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CSHOW_0826 putative iron(III) ABC transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CSHOW_0827 putative iron(III) ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CSHOW_0828 putative iron(III) ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CSHOW_1790 nitrate/sulfonate/bicarbonate ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CSHOW_1789 nitrate/sulfonate/bicarbonate ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CSHOW_1788 nitrate/sulfonate/bicarbonate ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CSHOW_0966 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CSHOW_0964 lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CSHOW_0965 lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CSHOW_0967 putative lipid asymmetry ABC transporter MlaABCDEF component MlaB K18480 linN; cholesterol transport system auxiliary component
D CSHOW_1749 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CSHOW_0084 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0085 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0086 amino acid ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D CSHOW_0087 amino acid ABC transporter, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CSHOW_0605 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CSHOW_0608 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CSHOW_0607 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CSHOW_0911 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0912 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0913 metQ3; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CSHOW_0914 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CSHOW_0915 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CSHOW_0606 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CSHOW_1231 cjaA; amino acid ABC transporter, periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CSHOW_1228 papP; pathogenesis-associated glutamine ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CSHOW_1229 amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CSHOW_1230 papQ; pathogenesis-associated glutamine ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CSHOW_1698 ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_2035 iron ABC transporter, periplasmic iron-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_0077 metal ion ABC transporter, periplasmic metal-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_0440 ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_0832 ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_0974 ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CSHOW_1696 ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CSHOW_2036 iron ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CSHOW_0076 metal ion ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CSHOW_0831 ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CSHOW_0976 ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CSHOW_1695 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CSHOW_2037 iron ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CSHOW_0830 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CSHOW_0975 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CSHOW_1422 chuD; heme ABC transporter ChuBCD, periplasmic substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CSHOW_1420 chuB; heme ABC transporter ChuBCD, permease protein K25027 btuC; cobalamin transport system permease protein
D CSHOW_1421 chuC; heme ABC transporter ChuBCD, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CSHOW_0112 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CSHOW_0109 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D CSHOW_0110 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CSHOW_1824 cbiQ; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CSHOW_1826 cbiM; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CSHOW_1823 cbiO; Co/Ni ABC transporter CbiKLMQO, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CSHOW_1827 cbiK; Co/Ni ABC transporter CbiKLMQO, periplasmic substrate-binding protein CbiK K10094 cbiK; nickel transport protein
D CSHOW_1825 cbiL; Co/Ni ABC transporter CbiKLMQO, membrane protein CbiL K16915 cbiL; nickel transport protein
D CSHOW_1839 polysaccharide ABC transporter, permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D CSHOW_1840 polysaccharide/polyol phosphate ABC transporter, ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CSHOW_0878 putative lipooligosaccharide transport system, permease component (LptF family) K07091 lptF; lipopolysaccharide export system permease protein
D CSHOW_0265 putative lipooligosaccharide transport system, permease component (LptG family) K11720 lptG; lipopolysaccharide export system permease protein
D CSHOW_1028 putative lipooligosaccharide transport system, ATP-binding component (LptB family) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CSHOW_0620 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CSHOW_0619 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CSHOW_1786 multidrug ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CSHOW_0465 nosY; copper ABC transporter NosDFY, putative permease protein NosY K01992 ABC-2.P; ABC-2 type transport system permease protein
D CSHOW_1785 multidrug ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CSHOW_0466 nosF; copper ABC transporter NosDFY, putative ATP-binding protein NosF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CSHOW_1795 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CSHOW_1796 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CSHOW_1153 lolC; lipoprotein releasing system, transmembrane protein, LolC/E family K02004 ABC.CD.P; putative ABC transport system permease protein
D CSHOW_1606 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CSHOW_1794 ferrirhodotorulic acid ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CSHOW_0026 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CSHOW_0315 DASS family sodium/dicarboxylate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CSHOW_0782 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CSHOW_0164 MatE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CSHOW_1685 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CSHOW_0191 aquaporin Z, MIP family channel protein K06188 aqpZ; aquaporin Z
D CSHOW_1270 putative potassium channel protein (TrkA domain) K10716 kch; voltage-gated potassium channel
D CSHOW_1932 BAX inhibitor (BI)-1 like protein (UPF0005 domain) K19416 yccA; modulator of FtsH protease
D CSHOW_1616 foc; formate/nitrite transporter K21993 fdhC; formate transporter
D CSHOW_0648 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CSHOW_1724 mscS; small conductance mechanosensitive channel protein K03442 mscS; small conductance mechanosensitive channel
D CSHOW_1930 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D CSHOW_1239 Mg/Co/Ni transporter, MgtE family K06213 mgtE; magnesium transporter
D CSHOW_0885 motP; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CSHOW_0886 motS; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CSHOW_1213 putative OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D CSHOW_1417 exbB1; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CSHOW_1584 exbB2; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CSHOW_1585 exbD2; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CSHOW_0362 tolR; Tol-Pal system subunit TolR K03559 exbD; biopolymer transport protein ExbD
D CSHOW_0901 putative CorA-like Mg2+ transporter protein K16074 zntB; zinc transporter
D CSHOW_1855 crcB; putative fluoride ion transporter K06199 crcB; fluoride exporter
D CSHOW_1222 putative mercury transporter, membrane protein MerT K08363 merT; mercuric ion transport protein
D CSHOW_2021 heavy metal-associated domain protein K08364 merP; periplasmic mercuric ion binding protein
D CSHOW_2022 heavy metal-associated domain protein K08364 merP; periplasmic mercuric ion binding protein
D CSHOW_1221 heavy-metal-associated domain protein, putative mercuric reductase K08364 merP; periplasmic mercuric ion binding protein
D CSHOW_1913 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CSHOW_1725 cadF; outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CSHOW_0158 outer membrane transport protein (OMPP1/FadL/TodX family) K06076 fadL; long-chain fatty acid transport protein
D CSHOW_1829 putative autotransporter serine protease K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D CSHOW_0123 putative TonB-dependent ferric coprogen/ferric rhodotorulic acid receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D CSHOW_0892 putative TonB-dependent ferric coprogen/ferric rhodotorulic acid receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D CSHOW_0766 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D CSHOW_1298 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CSHOW_1583 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CSHOW_0049 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CSHOW_1419 chuA; heme uptake system outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CSHOW_1791 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CSHOW_1869 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CSHOW_2031 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CSHOW_0979 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0139 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CSHOW_0387 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CSHOW_0741 beta-barrel assembly machinery complex, BamD/YfiO lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D CSHOW_1403 putative surface layer protein K21449 ata; trimeric autotransporter adhesin
D CSHOW_1609 putative surface layer protein K21449 ata; trimeric autotransporter adhesin
D CSHOW_1850 putative surface layer protein K21449 ata; trimeric autotransporter adhesin
D CSHOW_0407 putative surface layer protein K21449 ata; trimeric autotransporter adhesin
D CSHOW_0739 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D CSHOW_0643 putative lipooligosaccharide transport system, periplasmic component (LptA family) K09774 lptA; lipopolysaccharide export system protein LptA
D CSHOW_0558 putative lipooligosaccharide transport system, OM component (LptD family) K04744 lptD; LPS-assembly protein
D CSHOW_0423 Co/Zn/Cd efflux system component K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CSHOW_1226 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D CSHOW_0140 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CSHOW_1494 multidrug efflux system protein, EmrE family K18924 ykkC; paired small multidrug resistance pump
D CSHOW_1493 multidrug efflux system protein, EmrE family K18925 ykkD; paired small multidrug resistance pump
D CSHOW_1068 putative membrane protein, putative permease (EamA domain), type 2 K08978 TC.BAT1; bacterial/archaeal transporter family protein
D CSHOW_1095 rarD; resistance permease RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D CSHOW_2049 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter
D CSHOW_0240 GntP family permease, putative gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D CSHOW_0723 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CSHOW_0342 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CSHOW_1205 BCCT (betaine/carnitine/choline) family transporter K02168 betT; choline/glycine/proline betaine transport protein
D CSHOW_1707 tellurite-resistance/dicarboxylate transporter (TDT) family protein K03304 tehA; tellurite resistance protein
D CSHOW_1481 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CSHOW_1294 sstT; sodium ion-motive force-driven serine/threonine transporter K07862 sstT; serine/threonine transporter
D CSHOW_0080 nhaA1; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CSHOW_0929 nhaA2; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CSHOW_1144 K+/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter
D CSHOW_1864 xanthine/uracil permease K02824 uraA; uracil permease
D CSHOW_1377 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D CSHOW_1924 TRAP dicarboxylate transporter DctPQM, solute-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D CSHOW_1925 TRAP dicarboxylate transporter DctPQM, permease subunit DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D CSHOW_1926 TRAP dicarboxylate transporter DctPQM, permease subunit DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D CSHOW_1485 putative C4-dicarboxylate transporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D CSHOW_0962 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CSHOW_0897 putative membrane protein, predicted permease K24180 mleP; malate permease and related proteins
D CSHOW_0521 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CSHOW_1266 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CSHOW_0844 transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D CSHOW_0839 branched-chain amino acid transport protein, AzlC family K26605 azlC; branched chain amino acid efflux pump
D CSHOW_0840 branched-chain amino acid transport protein, AzlD family K26606 azlD; branched chain amino acid efflux pump
D CSHOW_0980 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CSHOW_0104 hypothetical membrane protein (DUF204 domain) K23242 mntP; manganese efflux pump family protein
D CSHOW_1799 ferrirhodotorulic acid ABC transporter, inner membrane protein K07243 FTR; high-affinity iron transporter
D CSHOW_1798 p19; ferrirhodotorulic acid ABC transporter, periplasmic binding protein K07230 p19; periplasmic iron binding protein
D CSHOW_0111 metal ion ABC transporter, permease protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D CSHOW_1423 energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CSHOW_1586 tonB2; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CSHOW_0363 tolA; Tol-Pal system subunit TolA K03832 tonB; periplasmic protein TonB
D CSHOW_0365 pal; Tol-Pal system peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CSHOW_0364 tolB; Tol-Pal system translocation protein TolB K03641 tolB; TolB protein
D CSHOW_1710 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_0197 molybdopterin-containing oxidoreductase IV, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_0327 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_1070 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_1264 molybdopterin-containing oxidoreductase III, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CSHOW_1391 putative thiosulfate/polysulfide reductase, molybdenum-binding subunit K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D CSHOW_1390 putative thiosulfate/polysulfide reductase, 4Fe-4S iron-sulfur binding domain-containing subunit K16293 psrB; polysulfide reductase chain B
D CSHOW_1389 putative thiosulfate/polysulfide reductase, membrane-anchoring subunit K16294 psrC; polysulfide reductase chain C
D CSHOW_0996 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CSHOW_0995 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CSHOW_1847 sapE; type I secretion system, membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D CSHOW_0141 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CSHOW_0898 macA; macrolide-specific efflux protein, membrane fusion protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CSHOW_1916 long-chain fatty acid ABC transporter, fused permease and ATPase components, SbmA family K17938 sbmA; peptide/bleomycin uptake transporter
C 02044 Secretion system [BR:csho02044]
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_1848 sapD; type I secretion system, ABC transporter, ATP-binding/permease components K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CSHOW_1847 sapE; type I secretion system, membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D CSHOW_1039 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CSHOW_1042 ctsE; transformation system, type II secretion system ATPase CtsE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CSHOW_1043 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CSHOW_1258 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CSHOW_1259 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CSHOW_0879 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CSHOW_0261 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CSHOW_0530 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CSHOW_0650 putative membrane protein, YGGT family K02221 yggT; YggT family protein
D CSHOW_1368 putative ComE family competence protein K02237 comEA; competence protein ComEA
D CSHOW_1248 competence protein, ComEC family K02238 comEC; competence protein ComEC
D CSHOW_0418 ctsW; transformation system, predicted amidophosphoribosyltransferase CtsW K02242 comFC; competence protein ComFC
D CSHOW_0794 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CSHOW_0343 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CSHOW_1611 hypothetical protein K04061 flhB2; flagellar biosynthesis protein
D CSHOW_0681 flhB2; FlhB C-terminus-related protein K04061 flhB2; flagellar biosynthesis protein
D CSHOW_0269 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CSHOW_0271 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CSHOW_0130 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CSHOW_0304 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0404 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0887 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CSHOW_1881 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CSHOW_1605 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CSHOW_1803 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CSHOW_1829 putative autotransporter serine protease K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D CSHOW_1154 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CSHOW_1289 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CSHOW_0501 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CSHOW_1288 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CSHOW_1934 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CSHOW_1967 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CSHOW_0715 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CSHOW_1326 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CSHOW_1290 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CSHOW_1187 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CSHOW_1602 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CSHOW_0762 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CSHOW_0761 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:csho02042]
D CSHOW_1913 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:csho02022]
D CSHOW_1329 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0300 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0541 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0894 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_1149 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CSHOW_0299 cosR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CSHOW_0542 racR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CSHOW_1148 cprR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CSHOW_0414 flgR; sigma54-dependent response regulator K02481 flgR; two-component system, NtrC family, response regulator
D CSHOW_0257 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CSHOW_1509 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CSHOW_0682 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CSHOW_0256 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CSHOW_1074 two-component system sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:csho02035]
D CSHOW_0257 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CSHOW_0258 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CSHOW_0683 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CSHOW_0682 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CSHOW_1509 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CSHOW_0256 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CSHOW_0430 NIT sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_1069 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CSHOW_0271 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CSHOW_0130 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CSHOW_0887 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CSHOW_1881 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CSHOW_1605 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CSHOW_0794 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CSHOW_0343 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CSHOW_0270 fliG; flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D CSHOW_0403 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CSHOW_0304 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0404 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CSHOW_0269 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CSHOW_1114 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CSHOW_1012 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CSHOW_1000 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CSHOW_1059 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CSHOW_1312 fliE; flagellar proximal rod protein K02408 fliE; flagellar hook-basal body complex protein FliE
D CSHOW_2024 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CSHOW_1310 flgB; flagellar proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D CSHOW_1311 flgC; flagellar proximal rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D CSHOW_2025 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CSHOW_0835 flgG2; flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CSHOW_0837 flgG; flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CSHOW_1113 putative protein possible flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CSHOW_2026 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CSHOW_2050 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CSHOW_1110 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D CSHOW_0874 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CSHOW_0416 flgP; LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP
D CSHOW_0415 flgQ; flagellar-associated protein FlgQ K24346 flgQ; flagellar motility protein FlgQ
D CSHOW_1852 fla; flagellin K02406 fliC; flagellin
D CSHOW_0787 flaC; flagellar secreted protein K02406 fliC; flagellin
D CSHOW_1118 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D CSHOW_1119 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CSHOW_0402 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CSHOW_0885 motP; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CSHOW_0886 motS; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CSHOW_1213 putative OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D CSHOW_0084 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0085 amino acid ABC transporter, periplasmic cysteine-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CSHOW_0740 fliW; flagellar assembly protein K13626 fliW; flagellar assembly factor FliW
D CSHOW_1117 flaG; flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D CSHOW_0399 flhF; flagellar biosynthesis (GTP-binding) protein K02404 flhF; flagellar biosynthesis protein FlhF
D CSHOW_0400 flhG; flagellar biosynthesis protein K04562 flhG; flagellar biosynthesis protein FlhG
D CSHOW_0261 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CSHOW_0530 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CSHOW_0879 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:csho04812]
D CSHOW_0232 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CSHOW_1169 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CSHOW_1168 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CSHOW_0352 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CSHOW_0353 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:csho04147]
D CSHOW_0984 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CSHOW_1877 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CSHOW_1592 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CSHOW_1591 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CSHOW_0538 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CSHOW_0294 ahpC; alkyl hydroperoxide reductase protein, peroxidase component K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CSHOW_1232 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CSHOW_0789 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CSHOW_1427 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CSHOW_0821 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CSHOW_0498 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CSHOW_0579 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CSHOW_0157 long-chain-fatty-acid--CoA ligase/synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CSHOW_0632 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CSHOW_0669 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CSHOW_0576 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CSHOW_1031 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CSHOW_0654 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CSHOW_0702 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CSHOW_0488 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CSHOW_0586 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CSHOW_1176 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CSHOW_1181 hypothetical protein K02183 CALM; calmodulin
D CSHOW_1590 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:csho02048]
D CSHOW_1998 cas1; CRISPR/Cas system-associated endonuclease Cas1, type I-B/HMARI K15342 cas1; CRISP-associated protein Cas1
D CSHOW_1999 cas2; CRISPR/Cas system-associated endoribonuclease Cas2, type I-B/HMARI K09951 cas2; CRISPR-associated protein Cas2
D CSHOW_2001 cas3; CRISPR/Cas system-associated endonuclease/helicase Cas3, type I-B/HMARI K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D CSHOW_2000 cas4; CRISPR/Cas system-associated RecB-like nuclease Cas4, type I-B/HMARI K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D CSHOW_2006 cas6; CRISPR/Cas system-associated RAMP protein Cas6, type I-B/HMARI K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D CSHOW_2004 cas8; CRISPR/Cas system-associated protein Cas8, type I-B/HMARI K19114 csh1; CRISPR-associated protein Csh1
D CSHOW_2003 cas7; CRISPR/Cas system-associated RAMP protein Cas7, type I-B/HMARI K19115 csh2; CRISPR-associated protein Csh2
D CSHOW_2002 cas5; CRISPR/Cas system-associated RAMP protein Cas5, type I-B/HMARI K19116 cas5h; CRISPR-associated protein Cas5h
D CSHOW_0437 hsdR; type I restriction/modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CSHOW_0435 hsdS2; type I restriction/modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CSHOW_0434 hsdM; type I restriction/modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CSHOW_1879 adenine-specific DNA methyltransferase (EcoRI methylase) K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CSHOW_0331 adenine-specific DNA methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CSHOW_0549 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CSHOW_1997 hypothetical protein K07448 mrr; restriction system protein
D CSHOW_2051 toxin-antitoxin system, antitoxin component, RelB family K07473 dinJ; DNA-damage-inducible protein J
D CSHOW_2052 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D CSHOW_1468 putative toxin-antitoxin system, toxin component, RelE/ParE family K19092 parE1_3_4; toxin ParE1/3/4
D CSHOW_1683 putative toxin-antitoxin system, toxin component, RelE/ParE family K19092 parE1_3_4; toxin ParE1/3/4
D CSHOW_0861 toxin-antitoxin system, toxin component, HigB family K07334 higB-1; toxin HigB-1
D CSHOW_0860 toxin-antitoxin system, antitoxin component K21498 higA-1; antitoxin HigA-1
D CSHOW_1169 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CSHOW_0232 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CSHOW_1813 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0649 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CSHOW_0127 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:csho01504]
D CSHOW_0141 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CSHOW_0140 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CSHOW_0139 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CSHOW_1846 sapF; type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
D CSHOW_0888 type I secretion system, outer membrane protein, TolC family K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:csho03100]
D CSHOW_0038 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1317 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1371 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_1902 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CSHOW_0513 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_1021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0167 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0168 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CSHOW_0432 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CSHOW_0695 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CSHOW_0698 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CSHOW_0041 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CSHOW_1078 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CSHOW_0808 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CSHOW_0161 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0693 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0700 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CSHOW_0039 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_1013 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_0496 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CSHOW_0166 tRNA-His K14226 tRNA-His; tRNA His
D CSHOW_1318 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_1372 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_1903 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CSHOW_0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0169 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0562 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0871 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CSHOW_0694 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0697 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0701 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CSHOW_0201 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_0614 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_1077 tRNA-Met K14230 tRNA-Met; tRNA Met
D CSHOW_1648 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CSHOW_0165 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CSHOW_1488 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_1942 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_0042 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CSHOW_0494 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CSHOW_0497 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CSHOW_0500 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CSHOW_0495 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CSHOW_0070 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_0696 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_0699 tRNA-Val K14237 tRNA-Val; tRNA Val
D CSHOW_1319 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CSHOW_1316 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CSHOW_0574 flavodoxin-like fold domain protein, putative NAD(P)H (quinone) dehydrogenase/reductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D CSHOW_1587 old yellow enzyme (OYE)-related FMN binding domain-containing protein K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D CSHOW_1412 msrAB; bifunctional (RS)-methionine sulfoxide reductase A/B K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D CSHOW_0116 cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CSHOW_0174 bcp; thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CSHOW_0011 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CSHOW_1072 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D CSHOW_0923 hydB; [NiFe] hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D CSHOW_0922 hydA; [NiFe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D CSHOW_0009 nrdG; anaerobic ribonucleoside triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CSHOW_1626 hyfA; hydrogenase-4, component A K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-]
D CSHOW_1625 hyfB; hydrogenase-4, component B K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D CSHOW_1623 hyfE; hydrogenase-4, membrane component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D CSHOW_1622 hyfF; hydrogenase-4, component F K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D CSHOW_2029 pcm; L-isoaspartate protein carboxylmethyltransferase, type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CSHOW_1424 putative coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D CSHOW_0152 hemN1; oxygen-independent coproporphyrinogen III oxidase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D CSHOW_1291 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CSHOW_1309 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CSHOW_1024 ate; arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CSHOW_1344 modD; quinolinate phosphoribosyltransferase-like protein K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D CSHOW_1518 pglB; undecaprenyl-diphosphooligosaccharide--protein glycotransferase K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D CSHOW_0338 NCAIR mutase (PurE)-related protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D CSHOW_1474 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CSHOW_1516 pglC; N,N'-diacetylbacilliosaminyl-1-phosphate transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D CSHOW_0176 astA1; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CSHOW_0183 astA2; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CSHOW_1353 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CSHOW_0114 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CSHOW_1194 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CSHOW_1019 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CSHOW_0637 tatD; ssDNA/RNA exonuclease, 3' - 5' specific K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CSHOW_0135 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CSHOW_1906 reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CSHOW_1392 alpha/beta hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D CSHOW_0137 carbohydrate kinase, YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CSHOW_0339 ATP-utilizing enzyme (PP-loop superfamily) K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D CSHOW_0340 putative DUF111 domain protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D CSHOW_1528 lig; DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D CSHOW_1476 copA; copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D CSHOW_0444 fdhD; formate dehydrogenase accessory protein K02379 fdhD; FdhD protein
D CSHOW_0126 iscU; iron-sulfur cluster assembly scaffold protein IscU K13819 K13819; NifU-like protein
D CSHOW_1621 hyfG; hydrogenase-4, component G K15830 hycE; formate hydrogenlyase subunit 5
D CSHOW_1620 hyfH; hydrogenase-4, component H K15831 hycF; formate hydrogenlyase subunit 6
D CSHOW_1619 hyfI; hydrogenase-4, component I K15832 hycG; formate hydrogenlyase subunit 7
D CSHOW_1434 napD; periplasmic nitrate reductase assembly protein K02570 napD; periplasmic nitrate reductase NapD
D CSHOW_1436 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF
D CSHOW_1639 putative iron-molybdenum cofactor synthase K02585 nifB; nitrogen fixation protein NifB
D CSHOW_1714 fldA; flavodoxin K03839 fldA; flavodoxin I
D CSHOW_0948 flavodoxin, long chain type K03839 fldA; flavodoxin I
D CSHOW_1439 napG; menaquinol dehydrogenase NapGH, periplasmic component NapG K02573 napG; ferredoxin-type protein NapG
D CSHOW_0470 nosG; menaquinol dehydrogenase NosGH, periplasmic component NosG K02573 napG; ferredoxin-type protein NapG
D CSHOW_1438 napH; menaquinol dehydrogenase NapGH, membrane component NapH K02574 napH; ferredoxin-type protein NapH
D CSHOW_1638 ferredoxin-type protein, NapH family K02574 napH; ferredoxin-type protein NapH
D CSHOW_0467 nosH; menaquinol dehydrogenase NosGH, membrane component NosH K02574 napH; ferredoxin-type protein NapH
D CSHOW_0033 cytochrome c nitrite reductase, NrfC subunit K04014 nrfC; protein NrfC
D CSHOW_0032 cytochrome c nitrite reductase, NrfD subunit K04015 nrfD; protein NrfD
D CSHOW_1580 pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CSHOW_0951 type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CSHOW_1522 glycosyltransferase, family 25 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D CSHOW_0653 mobB; molybdenum cofactor guanylyltransferase protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D CSHOW_0709 transporter, AbgT family K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
C 99999 Others
D CSHOW_0509 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CSHOW_1817 Barstar, ribonuclease (Barnase) inhibitor K03623 yhcO; ribonuclease inhibitor
D CSHOW_1618 hycH; formate hydrogenlyase family maturation protein K15834 hycH; formate hydrogenlyase maturation protein HycH
C 99974 Translation
C 99975 Protein processing
D CSHOW_1307 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CSHOW_0132 tig; trigger factor (peptidyl-prolyl cis/trans isomerase, chaperone) K03545 tig; trigger factor
D CSHOW_1304 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CSHOW_0933 hypC; hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D CSHOW_0934 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CSHOW_0935 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CSHOW_0927 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CSHOW_0136 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D CSHOW_2056 selT/selW/selH selenoprotein K07401 K07401; selenoprotein W-related protein
C 99976 Replication and repair
D CSHOW_1279 magIII; 3-methyladenine DNA glycosylase K07457 K07457; endonuclease III related protein
D CSHOW_0210 putative UPF0102 domain protein K07460 yraN; putative endonuclease
D CSHOW_0755 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CSHOW_0050 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D CSHOW_1532 wlaX; putative polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
C 99979 Viral proteins
C 99998 Others
D CSHOW_1953 YbaB/EbfC DNA-binding family protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CSHOW_0890 RND family efflux transporter, membrane subunit K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D CSHOW_1047 inorganic phosphate transporter, PitA family K03306 TC.PIT; inorganic phosphate transporter, PiT family
D CSHOW_0609 Na+/proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D CSHOW_0564 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CSHOW_0565 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CSHOW_0783 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CSHOW_1204 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CSHOW_1342 Na+/alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CSHOW_0052 Na+/alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CSHOW_1048 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D CSHOW_1186 putative RNA-binding protein (Jag domain) K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D CSHOW_0091 TerZ/TerD family protein K05795 terD; tellurium resistance protein TerD
D CSHOW_0090 TerZ/TerD family protein K05791 terZ; tellurium resistance protein TerZ
D CSHOW_2023 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CSHOW_1401 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D CSHOW_0149 putative nucleotide-binding protein (DUF520 domain) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CSHOW_1155 lolA; outer membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D CSHOW_1750 lipid asymmetry ABC transporter MlaABCDEF, lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CSHOW_0419 hypothetical protein K07286 yajG; uncharacterized lipoprotein
D CSHOW_1784 RND family efflux transporter, membrane fusion subunit K01993 ABC-2.TX; HlyD family secretion protein
D CSHOW_0953 putative autoinducer 2 transporter K11744 tqsA; AI-2 transport protein TqsA
D CSHOW_1862 inner membrane protein, CreD family K06143 creD; inner membrane protein
C 99994 Others
D CSHOW_0089 membrane protein, TerC family K05794 terC; tellurite resistance protein TerC
D CSHOW_0804 putative CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D CSHOW_0471 nosD; copper ABC transporter NosDFY, periplasmic copper-binding protein NosD K07218 nosD; nitrous oxidase accessory protein
D CSHOW_1773 putative heme iron utilization protein, ChuX/HutX family K07227 chuX; heme iron utilization protein
D CSHOW_1787 putative heme-copper protein NnrS K07234 K07234; uncharacterized protein involved in response to NO
D CSHOW_0029 NosL family protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CSHOW_0531 putative membrane protein, CvpA family K03558 cvpA; membrane protein required for colicin V production
D CSHOW_1747 putative lipoprotein (BON/OsmY domain) K04065 osmY; hyperosmotically inducible periplasmic protein
D CSHOW_1247 virulence factor, BrkB family protein K07058 K07058; membrane protein
D CSHOW_0559 putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D CSHOW_2017 lemA2; LemA protein K03744 lemA; LemA protein
D CSHOW_0457 lemA1; LemA protein K03744 lemA; LemA protein
D CSHOW_0536 putative sporulation domain protein K03749 dedD; DedD protein
D CSHOW_1406 hypothetical membrane protein (DUF1440 domain) K08996 yagU; putative membrane protein
D CSHOW_1124 PhnA domain-containing protein K06193 phnA; protein PhnA
D CSHOW_1256 hypothetical membrane protein (DUF417 domain) K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D CSHOW_1086 ankyrin domain protein K06867 K06867; uncharacterized protein
D CSHOW_1209 ankyrin domain protein K06867 K06867; uncharacterized protein
D CSHOW_1780 putative sulfatase maturation enzyme K06871 K06871; uncharacterized protein
D CSHOW_0458 putative phosphatase (TPM domain) K06872 K06872; uncharacterized protein
D CSHOW_0459 putative phosphatase (TPM domain) K06872 K06872; uncharacterized protein
D CSHOW_0460 putative phosphatase (TPM domain) K06872 K06872; uncharacterized protein
D CSHOW_0617 flpA; fibronectin type III domain-containing protein K06882 K06882; uncharacterized protein
D CSHOW_1408 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D CSHOW_0757 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D CSHOW_1281 ATPase (AAA+ superfamily, DUF815 domain) K06923 K06923; uncharacterized protein
D CSHOW_1082 CoA-binding domain protein K06929 K06929; uncharacterized protein
D CSHOW_1090 putative protein predicted Fe-S cluster-containing protein K06940 K06940; uncharacterized protein
D CSHOW_0485 hypothetical protein K06950 K06950; uncharacterized protein
D CSHOW_0717 putative RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D CSHOW_1748 RND superfamily exporter K07003 K07003; uncharacterized protein
D CSHOW_0047 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein K07005 K07005; uncharacterized protein
D CSHOW_0758 putative protein possible glyoxalase/bleomycin resistance protein K07032 K07032; uncharacterized protein
D CSHOW_0461 metal-dependent hydrolase/amidohydrolase K07045 K07045; uncharacterized protein
D CSHOW_1599 putative neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D CSHOW_0481 nucleoside-diphosphate-sugar epimerase K07071 K07071; uncharacterized protein
D CSHOW_0778 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D CSHOW_0313 putative membrane protein, sulfite exporter TauE/SafE family K07090 K07090; uncharacterized protein
D CSHOW_1107 putative membrane protein, TauE/SafE family permease K07090 K07090; uncharacterized protein
D CSHOW_0795 DHH-type phosphohydrolase K07097 K07097; uncharacterized protein
D CSHOW_0660 metallophosphatase K07098 K07098; uncharacterized protein
D CSHOW_1768 putative selenium metabolism protein, YedE family K07112 K07112; uncharacterized protein
D CSHOW_0426 putative NADH-flavin reductase K07118 K07118; uncharacterized protein
D CSHOW_1384 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1446 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1484 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1581 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1612 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1718 hypothetical protein K07126 K07126; uncharacterized protein
D CSHOW_1828 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_2014 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_0030 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_0193 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_0544 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_0665 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_0893 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1235 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1236 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1237 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CSHOW_1665 ATPase, AAA family (DUF4143 domain) K07133 K07133; uncharacterized protein
D CSHOW_1667 ATPase, AAA family (DUF4143 domain) K07133 K07133; uncharacterized protein
D CSHOW_1988 ATPase, AAA family K07133 K07133; uncharacterized protein
D CSHOW_0712 zinc ribbon domain protein (DUF164 domain) K07164 K07164; uncharacterized protein
D CSHOW_1188 membrane protein insertion efficiency factor, YidD family K08998 K08998; uncharacterized protein
D CSHOW_1046 putative protein GatB/YqeY family protein K09117 K09117; uncharacterized protein
D CSHOW_1574 PAS sensor-containing signal-transduction protein K09155 K09155; uncharacterized protein
D CSHOW_1402 putative DUF711 domain protein K09157 K09157; uncharacterized protein
D CSHOW_1739 putative membrane protein (DsbD domain) K09792 K09792; uncharacterized protein
D CSHOW_1269 putative DUF465 domain protein K09794 K09794; uncharacterized protein
D CSHOW_1758 SGNH family hydrolase K09795 K09795; uncharacterized protein
D CSHOW_0754 divergent polysaccharide deacetylase K09798 K09798; uncharacterized protein
D CSHOW_1741 putative DUF507 domain protein K09804 K09804; uncharacterized protein
D CSHOW_0873 putative DUF328 domain protein K09861 K09861; uncharacterized protein
D CSHOW_0612 putative UPF0167 domain protein K09925 K09925; uncharacterized protein
D CSHOW_1500 putative membrane protein K09943 K09943; uncharacterized protein
D CSHOW_0788 putative membrane protein K09943 K09943; uncharacterized protein
D CSHOW_0903 putative TrkA domain protein K09944 K09944; uncharacterized protein
D CSHOW_1891 putative DUF1287 domain protein K09974 K09974; uncharacterized protein
D CSHOW_1688 putative protein pyridoxine 5'-phosphate oxidase family protein K09979 K09979; uncharacterized protein
D CSHOW_0381 putative nucleic-acid-binding protein (DUF448 domain) K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024