+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cronobacter malonaticus CMCC45402

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P262_03074 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D P262_03965 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P262_01392 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P262_00892 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P262_03122 nth protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D P262_04773 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P262_05670 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P262_03074 O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D P262_01883 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D P262_03965 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P262_01884 alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E P262_01392 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P262_00923 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E P262_02029 3-methyladenine DNA glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E P262_00892 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P262_00230 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E P262_05664 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E P262_03948 Endonuclease 8 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E P262_03122 nth protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P262_03342 exonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E P262_01930 putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E P262_05382 Endonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E P262_01057 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E P262_01597 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E P262_05677 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E P262_05733 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E P262_00614 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E P262_03877 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E P262_02220 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E P262_03330 nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-] E P262_05466 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P262_05733 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E P262_01597 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E P262_05677 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P262_05403 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P262_05401 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P262_00511 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F P262_05680 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F P262_03433 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P262_01211 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E P262_00699 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E P262_01105 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E P262_02099 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E P262_01488 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E P262_04284 Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] E P262_02333 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D DNA polymerase III holoenzyme E P262_04649 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P262_00003 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P262_05078 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E P262_04025 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P262_03453 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P262_04612 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P262_04178 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E P262_04963 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E P262_02334 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E P262_01597 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E P262_05677 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P262_05466 DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P262_00616 hypothetical protein K03111 ssb; single-strand DNA-binding protein E P262_00425 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E P262_02145 hypothetical protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P262_01120 exonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E P262_01118 exonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E P262_01121 exonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E P262_01224 recA protein K03553 recA; recombination protein RecA E P262_02310 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E P262_02311 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P262_02309 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E P262_01675 rusA protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E P262_04526 rusA protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] E P262_00205 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E P262_04181 hypothetical protein K04067 priC; primosomal replication protein N'' E P262_02751 primosomal protein 1 K02317 dnaT; DNA replication protein DnaT E P262_04983 dnaT protein K02317 dnaT; DNA replication protein DnaT E P262_02099 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E P262_04317 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P262_04316 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E P262_01224 recA protein K03553 recA; recombination protein RecA E P262_04935 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E P262_00006 hypothetical protein K03629 recF; DNA replication and repair protein RecF E P262_05685 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P262_01057 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P262_01410 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E P262_04169 hypothetical protein K06187 recR; recombination protein RecR E P262_01349 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E P262_04319 recombination associated protein K03554 rdgC; recombination associated protein RdgC E P262_02310 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E P262_02311 hypothetical protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P262_02309 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E P262_04215 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E P262_01900 hypothetical protein K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E P262_04317 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P262_04316 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P262_01872 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P262_00008 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P262_02572 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P262_05380 transcriptional regulator HU subunit alpha K05787 hupA; DNA-binding protein HU-alpha F P262_04253 transcriptional regulator HU subunit beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P262_01654 hypothetical protein K07455 recT; recombination protein RecT F P262_01057 ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P262_01410 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F P262_04169 hypothetical protein K06187 recR; recombination protein RecR F P262_01597 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F P262_05677 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F P262_05359 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F P262_03281 ihfA protein K04764 ihfA; integration host factor subunit alpha F P262_03681 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F P262_02099 exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F P262_05456 recQ protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P262_00614 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F P262_03877 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F P262_02523 global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D P262_04599 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D P262_02798 DNA polymerase V UmuC K03502 umuC; DNA polymerase V D P262_02796 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D P262_01224 recA protein K03553 recA; recombination protein RecA D P262_00586 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D P262_01349 RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D P262_04833 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D P262_00616 hypothetical protein K03111 ssb; single-strand DNA-binding protein D P262_03506 hypothetical protein K12149 dinI; DNA-damage-inducible protein I D P262_01226 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P262_05509 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D P262_03621 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D P262_02396 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D P262_03839 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D P262_04773 nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P262_05670 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P262_01250 ribonucleotide-diphosphate reductase subunit alpha 1 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P262_01869 ribonucleotide-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P262_01248 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D P262_01866 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025