+D
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Transfer RNA Biogenesis - Clostridium saccharoperbutylacetonicum
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D Cspa_c30330 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Cspa_c44100 metal-dependent hydrolase, beta-lactamase superfamily III K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D Cspa_c28420 cca; CCA-adding enzyme Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D Cspa_c41190 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Cspa_c05360 gltX; glutamate--tRNA ligase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Cspa_c38330 proS2; proline--tRNA ligase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cspa_c01660 proS1; proline--tRNA ligase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cspa_c00570 ileS; isoleucine--tRNA ligase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Cspa_c53150 leuS; leucine--tRNA ligase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cspa_c00660 metG1; methionine--tRNA ligase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c18430 metG3; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c08900 metG2; methionine--tRNA ligase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c05450 glnS; glutamine--tRNA ligase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Cspa_c47200 argS2; arginine--tRNA ligase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cspa_c11060 argS1; arginine--tRNA ligase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cspa_c01340 lysS; lysine--tRNA ligase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cspa_c25710 aspS1; aspartate--tRNA ligase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D Cspa_c12440 alaS; alanine--tRNA ligase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cspa_c54680 alaXL; alanyl-tRNA editing protein AlaX-L K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cspa_c00990 asnS; asparagine--tRNA ligase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Cspa_c01390 glyQS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Cspa_c03310 thrS; threonine--tRNA ligase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cspa_c14440 serS2; serine--tRNA ligase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Cspa_c01670 cysS1; cysteine--tRNA ligase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cspa_c25230 cysS2; cysteine--tRNA ligase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cspa_c35240 valS; valine--tRNA ligase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Cspa_c25700 hisS2; histidine--tRNA ligase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cspa_c05640 hisS1; histidine--tRNA ligase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cspa_c26190 pheS; phenylalanine--tRNA ligase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Cspa_c26200 pheT; phenylalanine--tRNA ligase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Cspa_c53410 tyrS; tyrosine--tRNA ligase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cspa_c00820 tyrS2; tyrosine--tRNA ligase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cspa_c08790 trpS; tryptophan--tRNA ligase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D Cspa_c25670 dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D Cspa_c09250 HIT family hydrolase, diadenosine tetraphosphate hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D Cspa_c09210 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Cspa_c57910 putative methyltransferase, YaeB/AF_0241 family K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D Cspa_c02220 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Cspa_c13430 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Cspa_c15280 iscS2; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cspa_c12370 iscS1; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D Cspa_c06130 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Cspa_c32340 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Cspa_c58370 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Cspa_c58360 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D Cspa_c58410 rnpA; ribonuclease P protein component RnpA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D Cspa_c30330 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Cspa_c44100 metal-dependent hydrolase, beta-lactamase superfamily III K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D Cspa_c28420 cca; CCA-adding enzyme Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D Cspa_c41190 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D Cspa_c49230 ligT; 2'-5' RNA ligase LigT K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Cspa_c37790 kptA; putative RNA 2'-phosphotransferase KptA K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D Cspa_c53150 leuS; leucine--tRNA ligase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Cspa_c38330 proS2; proline--tRNA ligase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Cspa_c01660 proS1; proline--tRNA ligase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D Cspa_c53410 tyrS; tyrosine--tRNA ligase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cspa_c00820 tyrS2; tyrosine--tRNA ligase 2 K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Cspa_c08790 trpS; tryptophan--tRNA ligase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Cspa_c03310 thrS; threonine--tRNA ligase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Cspa_c00570 ileS; isoleucine--tRNA ligase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Cspa_c01340 lysS; lysine--tRNA ligase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Cspa_c12440 alaS; alanine--tRNA ligase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cspa_c54680 alaXL; alanyl-tRNA editing protein AlaX-L K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Cspa_c35240 valS; valine--tRNA ligase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Cspa_c00660 metG1; methionine--tRNA ligase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c18430 metG3; methionine--tRNA ligase 1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c08900 metG2; methionine--tRNA ligase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Cspa_c14440 serS2; serine--tRNA ligase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Cspa_c25710 aspS1; aspartate--tRNA ligase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Cspa_c01670 cysS1; cysteine--tRNA ligase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cspa_c25230 cysS2; cysteine--tRNA ligase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Cspa_c05360 gltX; glutamate--tRNA ligase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Cspa_c05450 glnS; glutamine--tRNA ligase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Cspa_c47200 argS2; arginine--tRNA ligase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cspa_c11060 argS1; arginine--tRNA ligase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Cspa_c26190 pheS; phenylalanine--tRNA ligase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Cspa_c26200 pheT; phenylalanine--tRNA ligase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Cspa_c25700 hisS2; histidine--tRNA ligase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cspa_c05640 hisS1; histidine--tRNA ligase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Cspa_c00990 asnS; asparagine--tRNA ligase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D Cspa_c35300 aspS3; aspartate--tRNA ligase AspS K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D Cspa_c31980 aspS2; aspartate--tRNA ligase AspS K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
C Trans-editing factors
D Cspa_c25670 dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Cspa_c32410 YbaK/EbsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D Cspa_c16710 proX; prolyl-tRNA editing protein ProX K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D Cspa_c56580 tadA; tRNA-specific adenosine deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D Cspa_c01320 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Cspa_c34270 dus; putative tRNA-dihydrouridine synthase Dus K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D Cspa_c32420 miaB; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Cspa_c09240 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D Cspa_c18240 methylase involved in ubiquinone/menaquinone biosynthesis K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D Cspa_c09210 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Cspa_c13170 trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Cspa_c58370 mnmE; tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Cspa_c09610 trmK; tRNA (adenine(22)-N(1))-methyltransferase TrmK K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Cspa_c51160 cspR; putative tRNA (cytidine(34)-2'-O)-methyltransferase CspR K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Cspa_c57910 putative methyltransferase, YaeB/AF_0241 family K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D Cspa_c57580 putative DNA modification methylase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D Cspa_c26180 tRNA/rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D Cspa_c02220 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Cspa_c13430 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D Cspa_c12390 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Cspa_c50820 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Cspa_c15280 iscS2; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Cspa_c12370 iscS1; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D Cspa_c58360 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Cspa_c32340 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Cspa_c25580 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Cspa_c33010 quEC 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Cspa_c33040 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Cspa_c33030 queE; 7-carboxy-7-deazaguanine synthase QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Cspa_c33000 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Cspa_c20530 hypothetical protein containing Fe-S binding domain K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Cspa_c22920 4Fe-4S ferredoxin, iron-sulfur binding domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Cspa_c14950 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D Cspa_c25590 tgt; queuine tRNA-ribosyltransferase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Cspa_c15290 thiI; putative tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Cspa_c01270 tilS; tRNA(Ile)-lysidine synthase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Cspa_c07180 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Cspa_c06130 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Cspa_c05240 gcp; O-sialoglycoprotein endopeptidase Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Cspa_c07190 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Cspa_c55930 thiF2; molybdopterin/thiamine biosynthesis protein ThiF K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Cspa_c13000 hypothetical protein UPF0348 K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C Cspa_c51010 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C Cspa_c13460 pnp; polyribonucleotide nucleotidyltransferase Pnp K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024