+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Chryseobacterium taklimakanense</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
C    BER (base exicision repair)
D      DNA glycosylases
E        4412677_00874 ung; Uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        4412677_02468 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        4412677_01568 nth; Endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      4412677_00245 mutator mutT protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      4412677_00264 Uncharacterized conserved protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      4412677_01125 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
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A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      4412677_00657 ada; Regulatory protein of adaptative response	K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] 
C    BER (base exicision repair)
D      DNA glycosylases
E        4412677_00874 ung; Uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        4412677_02468 mutY; A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        4412677_00285 tag; DNA-3-methyladenine glycosylase 1	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        4412677_00749 mutM; Formamidopyrimidine-DNA glycosylase	K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] 
E        4412677_01568 nth; Endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        4412677_00561 xthA; Exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        4412677_01065 exoA; Exodeoxyribonuclease	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
D      RecJ
E        4412677_01946 recJ; Single-stranded-DNA-specific exonuclease recJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        4412677_00830 ligA; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        4412677_02453 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        4412677_00333 uvrA_2; Excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        4412677_00274 uvrA_1; Excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        4412677_01539 uvrB; excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
E        4412677_02314 uvrC; Excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C 
E        4412677_02450 pcrA; ATP-dependent DNA helicase pcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        4412677_02453 polA; DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        4412677_00830 ligA; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          4412677_02029 rpoB; DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          4412677_02030 rpoC; DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          4412677_01928 rpoA; DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          4412677_01803 mfd; Transcription-repair-coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        4412677_01531 mutS; DNA mismatch repair protein mutS	K03555 mutS; DNA mismatch repair protein MutS 
E        4412677_00875 mutS2; MutS2 protein	K07456 mutS2; DNA mismatch repair protein MutS2 
D      Molecular matchmaker
E        4412677_01470 mutL; DNA mismatch repair protein mutL	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
D      DNA exonucleases
E        4412677_00085 exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        4412677_00966 dnaE_2; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        4412677_00823 dnaE_1; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        4412677_00767 dnaN; DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        4412677_00413 DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        4412677_00033 DNA polymerase III subunit delta'	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        4412677_00585 dinG_1; Probable ATP-dependent helicase dinG homolog	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        4412677_01743 dinG_2; Probable ATP-dependent helicase dinG homolog	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        4412677_02034 dnaQ; DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        4412677_00157 dnaX; DNA polymerase III subunit tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        4412677_00830 ligA; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        4412677_02450 pcrA; ATP-dependent DNA helicase pcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        4412677_00018 ssb; Helix-destabilizing protein	K03111 ssb; single-strand DNA-binding protein 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        4412677_01165 recA; Recombinase A	K03553 recA; recombination protein RecA 
E        4412677_02253 ruvA; Holliday junction ATP-dependent DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        4412677_01258 ruvB; Holliday junction ATP-dependent DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        4412677_01343 ruvC; Crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        4412677_00457 priA; Primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
D      RecFOR pathway proteins
E        4412677_01165 recA; Recombinase A	K03553 recA; recombination protein RecA 
E        4412677_01189 DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        4412677_00809 recF; DNA replication and repair protein recF	K03629 recF; DNA replication and repair protein RecF 
E        4412677_00080 Divergent AAA domain	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        4412677_02363 recG; ATP-dependent DNA helicase recG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        4412677_01946 recJ; Single-stranded-DNA-specific exonuclease recJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        4412677_02375 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        4412677_02442 recR; Recombination protein RecR	K06187 recR; recombination protein RecR 
E        4412677_01459 recN; Recombination protein N	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        4412677_02253 ruvA; Holliday junction ATP-dependent DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        4412677_01258 ruvB; Holliday junction ATP-dependent DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        4412677_01343 ruvC; Crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
D      Other HR factor
D      Archaeal homologous recombinant proteins
E        4412677_01742 Ornithine/acetylornithine aminotransferase	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
E        4412677_00743 Ku protein	K10979 ku; DNA end-binding protein Ku 
E        4412677_00744 Putative DNA ligase-like protein Rv0938/MT0965	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          4412677_00257 gyrA_1; DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          4412677_00053 gyrB; DNA gyrase subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          4412677_01379 topA; DNA topoisomerase 1	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
F          4412677_00748 Eukaryotic DNA topoisomerase I, catalytic core	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          4412677_02467 hup; HB	K03530 hupB; DNA-binding protein HU-beta 
F          4412677_02049 hupB; DNA-binding protein HU-beta	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          4412677_01946 recJ; Single-stranded-DNA-specific exonuclease recJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          4412677_02375 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          4412677_02442 recR; Recombination protein RecR	K06187 recR; recombination protein RecR 
F          4412677_00830 ligA; DNA ligase	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
E        Supressor
F          4412677_01990 recQ_2; ATP-dependent DNA helicase recQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          4412677_00011 recQ_1; ATP-dependent DNA helicase recQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          4412677_00333 uvrA_2; Excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          4412677_00274 uvrA_1; Excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          4412677_01539 uvrB; excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      4412677_01145 dinB_2; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      4412677_00967 dinB_1; DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
C    Other SOS response factors
D      4412677_01165 recA; Recombinase A	K03553 recA; recombination protein RecA 
D      4412677_01459 recN; Recombination protein N	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      4412677_00018 ssb; Helix-destabilizing protein	K03111 ssb; single-strand DNA-binding protein 
D      4412677_02079 recombination regulator RecX	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
C    DNA helicases
D      4412677_02626 recQ_3; ATP-dependent DNA helicase recQ	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
D      4412677_00844 ATP-dependent helicase	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
C    Modulation of nucleotide pools
D      4412677_00245 mutator mutT protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      4412677_00264 Uncharacterized conserved protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      4412677_01125 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      4412677_02075 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      4412677_02073 nrdB; Ribonucleoside-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
D      4412677_01304 nrnA; Bifunctional oligoribonuclease and PAP phosphatase nrnA	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] 
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#Last updated: March 29, 2024