+D Messenger RNA Biogenesis KO
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Prokaryotic Defense System - Acetivibrio thermocellus ATCC 27405
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ACRISPR-Cas system
B Universal Cas proteins
C Cthe_3218 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C Cthe_2297 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
C Cthe_3219 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
C Cthe_2296 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2
B Type I CRISPR-Cas system
C Type I signiture cas proteins
D Cthe_2299 CRISPR-associated helicase Cas3 K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Cthe_3204 CRISPR-associated HD domain protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
C Subtype I-A factors
D Cthe_2301 CRISPR-associated regulatory protein, DevR family K19075 cst2; CRISPR-associated protein Cst2
D Cthe_2298 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3220 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_2300 CRISPR-associated protein Cas5 K19090 cas5t; CRISPR-associated protein Cas5t
D Cthe_2303 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-B factors
D Cthe_3201 CRISPR-associated protein, Csh1 family K19114 csh1; CRISPR-associated protein Csh1
D Cthe_3202 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2
D Cthe_2298 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3220 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3203 CRISPR-associated protein Cas5, Hmari subtype K19116 cas5h; CRISPR-associated protein Cas5h
C Subtype I-C factors
D Cthe_2298 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3220 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
C Subtype I-D factors
D Cthe_2298 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3220 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_2303 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
C Subtype I-E factors
C Subtype I-F factors
C Subtype I-U factors
D Cthe_3211 protein of unknown function DUF324 K19134 csx10; CRISPR-associated protein Csx10
D Cthe_2053 hypothetical protein K19134 csx10; CRISPR-associated protein Csx10
B Type II CRISPR-Cas system
C Type II signiture cas proteins
C Subtype II-A factors
C Subtype II-B factors
D Cthe_2298 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Cthe_3220 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
B Type III CRISPR-Cas system
C Type III signiture cas proteins
C Subtype III-A factors
D Cthe_2054 protein of unknown function DUF324 K09002 csm3; CRISPR-associated protein Csm3
C Subtype III-B factors
C Subtype III-U factors
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ARestriction and modification system (R-M system)
B Type I R-M system
C Cthe_1144 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
C Cthe_1145 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
B Type II R-M system
C Restriction endonucleases
D Cthe_1512 Type II site-specific deoxyribonuclease K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
C DNA methyltransferases
D Cthe_2470 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Cthe_1513 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Cthe_1728 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cthe_1749 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Cthe_2320 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Type III R-M system
C Cthe_0518 Type III site-specific deoxyribonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
C Cthe_0519 Site-specific DNA-methyltransferase (adenine-specific) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
B Type IV R-M system
C Cthe_1641 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
C Cthe_1731 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
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AToxin-antitoxin system (TA system)
B Type I TA system
C Hok-Sok
C SymE-SymR
C Ldr-Rdl
C TisB-IstR
C Ibs-Sib
C ShoB-OhsC
C RalR-RalA
B Type II TA system
C MazF-MazE
D Cthe_2699 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Cthe_2501 hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Cthe_2698 putative transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C ChpB-ChpS
C YhaV-PrlF
C RelE/StbE-RelB/StbD
C YafQ-dinJ
C YoeB-YefM
C HipA-HipB
D Cthe_1462 helix-turn-helix domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
C HicA-HicB
C YafO-YafN
C Hha-TomB
C PspC-PspB
D Cthe_0072 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Cthe_1057 phage shock protein C, PspC K03973 pspC; phage shock protein C
C CcdB-CcdA
C ParE-ParD
C Doc-Phd
C HigB-HigA
C MqsR-MqsA
C VapC-VapB
C PezT-PezA
C YobL-YobK
C YokI-YokJ
C YqcG-YqcF
C YxiD-YxxD
C FitB-FitA
C BC_0920-BC_0921
C Type II TA system related factors
D Cthe_0445 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Cthe_0088 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D Cthe_2619 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
B Type III TA system
C AbiQ system
B Type IV TA system
C YeeV-YeeU
C CptA-CptB
B Type V TA system
C GhoT-GhoS
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ADNA phosphothiolation system
B Sulfur modification proteins
C Cthe_1064 Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C Cthe_0720 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
B DNA phosphorothioation-dependent restriction proteins
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: November 7, 2023