+F Repair protein KO
#
DNA Repair and Recombination Proteins - Candida tropicalis
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CTRG_03756 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CTRG_02224 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CTRG_05712 predicted protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E CTRG_05704 conserved hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E CTRG_05193 conserved hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E CTRG_03205 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E CTRG_02221 DNA-(apurinic or apyrimidinic site) lyase 1 K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E CTRG_03279 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F CTRG_05098 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F CTRG_06077 conserved hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F CTRG_04830 conserved hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E DNA polymerase epsilon complex
F CTRG_00708 DNA polymerase epsilon K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F CTRG_05871 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F CTRG_01115 predicted protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F CTRG_04576 hypothetical protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E CTRG_00214 conserved hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E CTRG_00417 structure-specific endonuclease RAD27 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E CTRG_02631 DNA ligase I, mitochondrial precursor K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E CTRG_00756 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E CTRG_01378 predicted protein K08075 E3.1.3.32; polynucleotide 3'-phosphatase [EC:3.1.3.32]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F CTRG_05587 conserved hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F CTRG_01276 conserved hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F CTRG_02424 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F CTRG_04267 conserved hypothetical protein K10609 CUL4; cullin 4
E NER4 complex
F CTRG_01275 conserved hypothetical protein K15082 RAD7; DNA repair protein RAD7
F CTRG_04680 DNA repair protein RAD16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F CTRG_04456 DNA-directed RNA polymerase II 140 kDa polypeptide K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F CTRG_03853 DNA-directed RNA polymerase II 45 kDa polypeptide K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F CTRG_01612 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F CTRG_03566 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F CTRG_02692 DNA-directed RNA polymerases I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F CTRG_04454 DNA-directed RNA polymerase II 19 kDa polypeptide K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F CTRG_00528 DNA-directed RNA polymerases I K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F CTRG_01737 DNA-directed RNA polymerase II subunit 9 K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F CTRG_00281 DNA-directed RNA polymerases II subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F CTRG_03714 DNA-directed RNA polymerases I K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F CTRG_02424 RING-box protein 1A K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F CTRG_04267 conserved hypothetical protein K10609 CUL4; cullin 4
F CTRG_02555 conserved hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F CTRG_02670 conserved hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F CTRG_00693 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E CTRG_00802 DNA repair helicase RAD25 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E CTRG_04956 DNA repair helicase RAD3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E CTRG_00308 conserved hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E CTRG_01241 suppressor of stem-loop protein 1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E CTRG_02929 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E CTRG_00586 TFIIH basal transcription factor complex subunit 2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E CTRG_05493 RNA polymerase II transcription factor B subunit 5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E CTRG_04213 serine/threonine-protein kinase KIN28 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E CTRG_04588 hypothetical protein K06634 CCNH; cyclin H
E CTRG_05286 conserved hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E CTRG_01108 conserved hypothetical protein K07466 RFA1; replication factor A1
E CTRG_01746 conserved hypothetical protein K10739 RFA2; replication factor A2
E CTRG_03391 conserved hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E CTRG_05009 DNA repair protein RAD14 K10847 XPA; DNA-repair protein complementing XP-A cells
E CTRG_04825 conserved hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E CTRG_02028 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E CTRG_00480 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E CTRG_02631 DNA ligase I, mitochondrial precursor K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E CTRG_02169 conserved hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E CTRG_01046 conserved hypothetical protein K03869 CUL3; cullin 3
E CTRG_04707 hypothetical protein K03872 ELOC; elongin-C
E CTRG_04763 predicted protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E CTRG_03762 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E CTRG_01949 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E CTRG_03593 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E CTRG_00069 conserved hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E CTRG_02080 predicted protein K10858 PMS2; DNA mismatch repair protein PMS2
E CTRG_03715 conserved hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E CTRG_05098 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E CTRG_06077 conserved hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E CTRG_04830 conserved hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
D RPA (replication factor A)
E CTRG_01108 conserved hypothetical protein K07466 RFA1; replication factor A1
E CTRG_01746 conserved hypothetical protein K10739 RFA2; replication factor A2
E CTRG_03391 conserved hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E CTRG_01529 activator 1 95 kDa subunit K10754 RFC1; replication factor C subunit 1
E CTRG_04872 activator 1 41 kDa subunit K10755 RFC2_4; replication factor C subunit 2/4
E CTRG_05466 activator 1 40 kDa subunit K10756 RFC3_5; replication factor C subunit 3/5
E CTRG_01161 activator 1 40 kDa subunit K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E CTRG_00214 conserved hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E CTRG_05280 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E CTRG_02631 DNA ligase I, mitochondrial precursor K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E CTRG_04866 conserved hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E CTRG_04860 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E CTRG_02382 conserved hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E CTRG_04860 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E CTRG_02382 conserved hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
E CTRG_00891 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E CTRG_00891 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51
E CTRG_01810 conserved hypothetical protein K10958 RAD57; DNA repair protein RAD57
D Rad52 family proteins
E CTRG_02992 predicted protein K10873 RAD52; DNA repair and recombination protein RAD52
E CTRG_03891 predicted protein K10959 RAD59; DNA repair protein RAD59
D Rad54 family proteins
E CTRG_03630 DNA repair and recombination protein RAD54 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E CTRG_02020 conserved hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E CTRG_01930 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E CTRG_01930 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E CTRG_02493 conserved hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E CTRG_02027 conserved hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E CTRG_01108 conserved hypothetical protein K07466 RFA1; replication factor A1
E CTRG_01746 conserved hypothetical protein K10739 RFA2; replication factor A2
E CTRG_03391 conserved hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E CTRG_00717 serine/threonine-protein phosphatase PPH3 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E CTRG_04641 conserved hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E CTRG_00790 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E CTRG_04962 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E CTRG_02242 predicted protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E CTRG_00486 conserved hypothetical protein K22823 NSMCE3; non-structural maintenance of chromosomes element 3
E CTRG_00068 conserved hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E CTRG_02939 conserved hypothetical protein K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E CTRG_02989 small nuclear ribonucleoprotein E K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E CTRG_03765 predicted protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E CTRG_04145 predicted protein K10991 SWI5; DNA repair protein Swi5/Sae3
E CTRG_00588 conserved hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E CTRG_05245 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E CTRG_00249 predicted protein K15079 SLX4; structure-specific endonuclease subunit SLX4
E CTRG_00257 predicted protein K15079 SLX4; structure-specific endonuclease subunit SLX4
E CTRG_01064 conserved hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E CTRG_01820 predicted protein K11339 MORF4L1; mortality factor 4-like protein 1
E CTRG_05876 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E CTRG_02571 conserved hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E CTRG_04048 conserved hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
E CTRG_01035 predicted protein K26122 MMS22; E3 ubiquitin-protein ligase substrate receptor MMS22
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E CTRG_03466 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E CTRG_00761 predicted protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E CTRG_04860 conserved hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E CTRG_02382 conserved hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E CTRG_01324 ATP-dependent DNA ligase K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
D Other NHEJ factors
E CTRG_00756 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E CTRG_02040 hypothetical protein K10887 DCLRE1C; DNA cross-link repair 1C protein [EC:3.1.-.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E CTRG_03568 conserved hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E CTRG_01930 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E CTRG_02493 conserved hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E CTRG_02027 conserved hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E CTRG_00891 DNA repair protein RAD51 K04482 RAD51; DNA repair protein RAD51
E CTRG_04935 conserved hypothetical protein K11137 TELO2; telomere length regulation protein
E CTRG_03567 conserved hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E CTRG_04866 conserved hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D CTRG_03903 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D CTRG_02255 hypothetical protein K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
D CTRG_02713 predicted protein K03508 POLZ2; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D CTRG_05196 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D CTRG_02864 predicted protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D CTRG_01105 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D CTRG_01104 conserved hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D CTRG_03549 ubiquitin-conjugating enzyme variant MMS2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D CTRG_05270 ubiquitin-conjugating enzyme E2 13 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D CTRG_00214 conserved hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D CTRG_00118 conserved hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D CTRG_00503 conserved hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D CTRG_04872 activator 1 41 kDa subunit K10755 RFC2_4; replication factor C subunit 2/4
D CTRG_05466 activator 1 40 kDa subunit K10756 RFC3_5; replication factor C subunit 3/5
D CTRG_01161 activator 1 40 kDa subunit K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D CTRG_00118 conserved hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
D CTRG_01664 conserved hypothetical protein K02544 MEC3; G2-specific checkpoint protein
D CTRG_02441 conserved hypothetical protein K06663 DDC1; DNA damage checkpoint protein
C FPC (fork protection complex)
D CTRG_02716 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D CTRG_01497 conserved hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D CTRG_04101 predicted protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D CTRG_04935 conserved hypothetical protein K11137 TELO2; telomere length regulation protein
D CTRG_04575 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D CTRG_03206 conserved hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D CTRG_02792 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D CTRG_02793 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D CTRG_06118 DNA damage response protein kinase DUN1 K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D CTRG_05505 predicted protein K02555 MIH1; M-phase inducer tyrosine phosphatase [EC:3.1.3.48]
D CTRG_04785 protein BMH2 K06630 YWHAE; 14-3-3 protein epsilon
D CTRG_06214 conserved hypothetical protein K02831 RAD53; ser/thr/tyr protein kinase RAD53 [EC:2.7.11.-]
D CTRG_06002 predicted protein K06661 RAD9; DNA repair protein RAD9
D CTRG_05463 hypothetical protein K02543 MEC1; cell cycle checkpoint protein MEC1
D CTRG_01433 conserved hypothetical protein K15081 AMN1; antagonist of mitotic exit network protein 1
D CTRG_03357 conserved hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D CTRG_05718 hypothetical protein K24664 FKH; forkhead protein FKH
D CTRG_05558 vacuolar protein sorting-associated protein VPS4 K12196 VPS4; vacuolar protein-sorting-associated protein 4
B Other factors with a suspected DNA repair function
C DNA polymerases
D CTRG_05412 conserved hypothetical protein K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
C Nucleases
D CTRG_04631 predicted protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D CTRG_00748 predicted protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
C Helicases
C PSO4 complex
D CTRG_05612 conserved hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D CTRG_03423 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D CTRG_06194 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D CTRG_04759 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CTRG_04743 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CTRG_04434 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CTRG_01309 ribonucleoside-diphosphate reductase large chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D CTRG_00587 ribonucleoside-diphosphate reductase large chain K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D CTRG_01327 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D CTRG_01698 ribonucleoside-diphosphate reductase small chain 1 K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CTRG_03756 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CTRG_02224 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CTRG_01837 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E CTRG_02879 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CTRG_03205 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E CTRG_02345 predicted protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E CTRG_02345 predicted protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D CTRG_04759 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CTRG_04743 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CTRG_04434 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024