+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Cyprinodon tularosa (White Sands pupfish)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 119778051 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 119771567 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 119782084 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 119773936 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 119798987 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 119776118 RNA guanine-N7 methyltransferase activating subunit-like K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 119798724 nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 119772508 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 119798971 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 119782704 cleavage and polyadenylation specificity factor subunit 7-like K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 119786204 cpsf6; cleavage and polyadenylation specificity factor subunit 6 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 119788302 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 119781170 pcf11; LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 119785227 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 119771558 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 119773677 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 119797842 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 119771317 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 119788453 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 119779096 wdr33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 119772758 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 119780028 WD repeat-containing protein 82-like K14962 WDR82; COMPASS component SWD2
E 119772148 serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 119775196 serine/threonine-protein phosphatase PP1-beta catalytic subunit-like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 119791293 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 119795597 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit A K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 119798206 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 119780047 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 119786093 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 119786292 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 119797580 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 119779496 sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 119788634 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 119772013 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 119779873 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 119793183 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 119775465 snrpg; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 119792696 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 119776633 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 119771558 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 119773677 cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 119797842 cleavage and polyadenylation specificity factor subunit 3-like K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 119786292 cstf2; cleavage stimulation factor subunit 2 isoform X1 K14407 CSTF2; cleavage stimulation factor subunit 2
E 119779496 sympk; symplekin K06100 SYMPK; symplekin
E 119777344 histone RNA hairpin-binding protein isoform X1 K18710 SLBP; histone RNA hairpin-binding protein
E 119785696 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 119786111 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 119785586 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 119798473 supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 119773426 mettl3; N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 119776316 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 119791643 mettl4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 119782803 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 119779121 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 119787255 virma; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 119780060 RNA-binding protein 15-like K13190 RBM15; RNA-binding protein 15
E 119782173 rbm15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 119797105 rbm15b; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 119779292 zc3h13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 119775061 E3 ubiquitin-protein ligase Hakai-like K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 119792714 papolg; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 119782088 tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 119791006 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 119794881 bard1; BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 119771869 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 119795139 fto; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 119783671 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 119775071 tardbpb; TAR DNA-binding protein 43 isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
E 119797067 tardbpa; TAR DNA binding protein, like isoform X1 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 119771801 dhx40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 119777711 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 119793924 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 119791983 mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 119783788 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 119785814 tent5aa; terminal nucleotidyltransferase 5A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 119788694 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 119794921 terminal nucleotidyltransferase 5A-like K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 119774514 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 119777358 terminal nucleotidyltransferase 5C K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 119785123 zc3h14; zinc finger CCCH domain-containing protein 14 isoform X1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 119777842 serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
D 119789587 srrt; serrate RNA effector molecule homolog isoform X1 K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 119796674 rbm8a; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 119787623 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 119779365 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 119781740 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 119785553 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 119776637 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 119796890 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 119790377 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 119774833 pnn; pinin K13114 PNN; pinin
E 119773421 acin1b; apoptotic chromatin condensation inducer 1b isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 119793336 acin1a; apoptotic chromatin condensation inducer in the nucleus K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 119773180 RNA-binding protein with serine-rich domain 1-like isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 119774184 srrm1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 119794168 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 119790859 thoc2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 119784476 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 119779365 aly/REF export factor 2-like K12881 THOC4; THO complex subunit 4
E 119781740 alyref; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 119786577 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 119796859 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 119790083 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
E 119795814 chtopa; chromatin target of PRMT1a K28424 CHTOP; chromatin target of PRMT1 protein
D TREX-2 complex
E 119791639 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 119785969 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 119776857 transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 119785869 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 119792434 cetn2; caltractin K10840 CETN2; centrin-2
E 119799205 cetn3; centrin-3 K16466 CETN3; centrin-3
E 119774015 germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 119774129 nucleoprotein TPR-like K09291 TPR; nucleoprotein TPR
E 119781814 tprb; translocated promoter region b, nuclear basket protein isoform X1 K09291 TPR; nucleoprotein TPR
E 119789993 rae1; mRNA export factor isoform X1 K14298 RAE1; mRNA export factor
E 119797221 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 119780995 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 119777686 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 119778363 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 119793866 nup50; nuclear pore complex protein Nup50 isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 119776559 nup54; nucleoporin p54 isoform X1 K14308 NUP54; nuclear pore complex protein Nup54
E 119793919 nup62l; nucleoporin 62 like K14306 NUP62; nuclear pore complex protein Nup62
E 119786521 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 119789130 nup93; nuclear pore complex protein Nup93 isoform X1 K14309 NUP93; nuclear pore complex protein Nup93
E 119781171 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 119771300 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 119796353 nup133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 119776535 nup188; nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 119795835 nup153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 119781529 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 119787233 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 119788252 nup35; nucleoporin NUP35 isoform X1 K14313 NUP35; nuclear pore complex protein Nup53
E 119797242 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 119781390 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 119789822 nup214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 119798131 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 119784611 nup58; nucleoporin p58/p45 isoform X1 K14307 NUPL1; nucleoporin p58/p45
E 119779519 nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 119787161 ndc1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 119797260 seh1l; nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1
E 119777489 ranbp2; E3 SUMO-protein ligase RanBP2 isoform X1 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 119775410 senp2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 119799162 aaas; aladin K14320 AAAS; aladin
E 119799205 cetn3; centrin-3 K16466 CETN3; centrin-3
E 119797450 gle1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 119784497 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 119778748 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 119788336 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 119779084 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1 K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 119798704 acidic leucine-rich nuclear phosphoprotein 32 family member B-like K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 119775880 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 119791224 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 119780863 elavl4; ELAV-like protein 4 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 119785304 elavl3; ELAV-like protein 3 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 119792975 elavl2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 119773242 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 119786555 transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 119798052 zgc:136908 K13525 VCP; transitional endoplasmic reticulum ATPase
E 119787502 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 119777668 transportin-2-like K18727 TNPO2; transportin-2
E 119783292 transportin-2 isoform X1 K18727 TNPO2; transportin-2
E 119778662 xpo1a; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 119792713 xpo1b; exportin-1 isoform X1 K14290 XPO1; exportin-1
E 119778219 xpo7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 119791004 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
E 119799416 rangap1a; ran GTPase-activating protein 1a isoform X1 K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 119772616 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 119772924 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 119776335 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 119788581 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 119782544 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 119795271 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 119775220 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 119777393 eukaryotic translation initiation factor 4 gamma 3-like K03260 EIF4G; translation initiation factor 4G
E 119784741 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 119786152 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 119798150 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 119776464 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 119798492 eif4h; eukaryotic translation initiation factor 4H isoform X1 K24086 EIF4H; translation initiation factor 4H
E 119790172 eukaryotic translation initiation factor 4E-binding protein 1-like K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 119792348 eukaryotic translation initiation factor 4E-binding protein 1-like isoform X1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 119788567 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 119778747 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 119784370 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 119787485 angel1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 119789421 angel2; protein angel homolog 2 K18729 ANGEL; protein angel
E 119772086 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119789858 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119790397 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 119771970 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 119774297 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 119790287 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 119784279 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 119773236 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119774232 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119782886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119786453 cytoplasmic polyadenylation element-binding protein 1-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119787979 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119778530 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 119788191 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 119779462 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 119786151 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 119773007 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 119774080 embryonic polyadenylate-binding protein B-like K13126 PABPC; polyadenylate-binding protein
E 119774190 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 119784825 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 119778167 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 119786641 paip2b; polyadenylate-binding protein-interacting protein 2B isoform X1 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 119790085 polyadenylate-binding protein-interacting protein 2-like K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 119778032 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 119780417 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 119786248 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 119784752 denr; density-regulated protein isoform X1 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 119778626 a1cf; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 119773988 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 119780247 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 119785046 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 119780111 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 119782372 msi1b; RNA-binding protein Musashi homolog 1b isoform X1 K14411 MSI; RNA-binding protein Musashi
E 119783817 dazap1; DAZ-associated protein 1 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 119786222 RNA-binding protein Musashi homolog 2 isoform X1 K14411 MSI; RNA-binding protein Musashi
E 119788354 hbs1l; HBS1-like protein isoform X1 K14416 HBS1; elongation factor 1 alpha-like protein
E 119798217 pelo; protein pelota homolog K06965 PELO; protein pelota
E 119776942 pabpn1; polyadenylate-binding protein 2 isoform X1 K14396 PABPN1; polyadenylate-binding protein 2
E 119782765 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 119791771 ddx19; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 119799478 zgc:193690; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 119785355 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 119799512 SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 119783827 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 119781962 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 119785201 la-related protein 6-like K18733 LARP6; la-related protein 6
E 119775877 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 119778416 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 119790904 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 119791890 transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 119775694 poldip3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 119786087 zc3h11a; zinc finger CCCH domain-containing protein 11A isoform X1 K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 119783001 leng8; leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 119798195 patl2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 119794330 eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 119782481 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 119797254 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 119794399 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 119771290 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 119783341 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 119786305 upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 119782310 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 119797963 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 119792089 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 119772060 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119773232 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119773837 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119783921 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119796543 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119797029 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 119774711 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 119783327 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 119788177 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 119773682 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 119776390 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 119787836 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 119791930 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 119792149 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 119794782 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 119793632 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 119774762 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 119790279 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 119798156 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 119774432 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 119783830 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 119779462 gigyf1a; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 119786151 gigyf2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 119782434 secisbp2l; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 119792878 selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 119786525 dhx34; probable ATP-dependent RNA helicase DHX34 isoform X1 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 119777650 gtpbp1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
E 119787002 gtpbp1l; GTP binding protein 1, like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 119776365 pum3; pumilio homolog 3 isoform X1 K14844 PUF6; pumilio homology domain family member 6
E 119771628 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 119780444 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 119792542 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 119792547 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 119792548 si:dkey-110c1.10; unconventional myosin-Va K10357 MYO5; myosin V
E 119774829 protein bicaudal D homolog 2-like isoform X1 K18739 BICD; protein bicaudal D
E 119779995 protein bicaudal D homolog 2-like K18739 BICD; protein bicaudal D
E 119781995 zgc:162200; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 119797230 bicd1a; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 119787561 exd1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 119771367 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 119782357 actin, cytoplasmic K05692 ACTB_G1; actin beta/gamma 1
E 119782358 actin, cytoplasmic-like K05692 ACTB_G1; actin beta/gamma 1
E 119783702 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 119771388 mbpa; uncharacterized protein mbpa isoform X1 K17269 MBP; myelin basic protein
E 119786145 myelin basic protein-like K17269 MBP; myelin basic protein
E 119786147 myelin basic protein-like isoform X1 K17269 MBP; myelin basic protein
E 119781288 vimentin A2-like K07606 VIM; vimentin
E 119786283 vimr2; peripherin K07606 VIM; vimentin
E 119787201 desmin-like K07606 VIM; vimentin
E 119774253 transcriptional regulator Myc-B-like K04377 MYC; Myc proto-oncogene protein
E 119790937 mych; myelocytomatosis oncogene homolog K04377 MYC; Myc proto-oncogene protein
E 119791708 myca; transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 119790879 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 119792395 T-box-containing protein TBX6L-like K10180 TBX6; T-box protein 6
E 119796758 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 119779700 nanos homolog 1-like K18741 NANOS1; protein nanos 1
E 119788952 nanos homolog 2-like K18741 NANOS1; protein nanos 1
E 119798573 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 119783300 far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 119787882 fubp1; far upstream element-binding protein 1 isoform X1 K13210 FUBP; far upstream element-binding protein
E 119791328 far upstream element-binding protein 3-like isoform X1 K13210 FUBP; far upstream element-binding protein
E 119794639 fubp3; far upstream element-binding protein 3 isoform X1 K13210 FUBP; far upstream element-binding protein
E 119773832 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 119774849 eef1a1a; elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
E 119790496 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 119790497 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 119791682 si:dkey-37o8.1; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 119788337 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 119779663 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 119771792 agfg1a; arf-GAP domain and FG repeat-containing protein 1a isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 119777004 agfg1b; arf-GAP domain and FG repeat-containing protein 1b isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 119783420 agfg2; arf-GAP domain and FG repeat-containing protein 2 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 119772190 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 119772300 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 119793204 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 119784640 ptbp1b; polypyrimidine tract-binding protein 1b isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 119788164 ptbp1a; polypyrimidine tract-binding protein 1a isoform X1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 119773236 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119774232 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119782886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119786453 cytoplasmic polyadenylation element-binding protein 1-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119787979 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 119772086 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119789858 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119790397 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 119771970 cyfip2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 119774297 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 119789122 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 119799169 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 119774148 poly(rC)-binding protein 4-like K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 119776993 poly(rC)-binding protein 4-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 119781075 zgc:110045; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 119781576 poly(rC)-binding protein 3-like isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 119782130 poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 119776138 caprin-1-like K18743 CAPRIN1; caprin-1
E 119782731 caprin1a; caprin-1a isoform X1 K18743 CAPRIN1; caprin-1
E 119781207 caprin2; caprin-2 K18744 CAPRIN2; caprin-2
E 119795553 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 119793331 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 119771381 protein argonaute-3-like isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 119772279 ago4; protein argonaute-4 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 119777453 protein argonaute-3 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 119777454 ago1; protein argonaute-1 isoform X1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 119785951 ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 119772616 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 119772924 eif4e2; eukaryotic translation initiation factor 4E type 2 isoform X1 K03259 EIF4E; translation initiation factor 4E
E 119776335 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 119788581 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 119794399 upf1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 119778530 ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 119788191 ATP-dependent RNA helicase DDX3X-like isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 119781153 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 119786514 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 119773489 RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 119776786 mex3a; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 119796732 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 119776811 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 119781375 lsm14b; protein LSM14 homolog B K18749 LSM14; protein LSM14
E 119781641 lsm14aa; LSM14A mRNA processing body assembly factor a isoform X1 K18749 LSM14; protein LSM14
E 119781955 lsm14ab; LSM14A mRNA processing body assembly factor b isoform X1 K18749 LSM14; protein LSM14
E 119789948 protein LSM14 homolog B-B-like K18749 LSM14; protein LSM14
E 119789122 poly(rC)-binding protein 2 isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 119799169 poly(rC)-binding protein 2-like isoform X1 K13162 PCBP2; poly(rC)-binding protein 2
E 119795553 ybx1; Y-box-binding protein 1 isoform X1 K09276 YBX1; Y-box-binding protein 1
E 119773356 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 119781941 Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 119783777 Wilms tumor protein 1-interacting protein-like K16682 AJUBA; LIM domain-containing protein
E 119773310 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 119785012 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 119792377 putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 119777465 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 119796430 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 119793632 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 119774762 smg5; protein SMG5 K11125 SMG5; protein SMG5
E 119790279 smg6; telomerase-binding protein EST1A isoform X1 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 119798156 smg7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 119789804 zgc:162730; mRNA decay activator protein ZFP36 K15308 TTP; tristetraprolin
E 119785752 mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 119788753 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 119789811 zgc:114130; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 119792712 zfp36l2; mRNA decay activator protein ZFP36L2 isoform X1 K18753 ZFP36L; butyrate response factor
E 119779137 lin28b; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 119797893 si:ch1073-284b18.2; protein lin-28 homolog A isoform X1 K18754 LIN28; protein lin-28
E 119798014 htt; huntingtin isoform X1 K04533 HD; huntingtin
E 119788023 ipo8; importin-8 isoform X1 K18755 IPO8; importin-8
E 119789100 protein bicaudal C homolog 1-like K18756 BICC1; protein bicaudal C
E 119790837 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 119780247 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 119785046 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 119774630 prkacba; protein kinase, cAMP-dependent, catalytic, beta a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 119794848 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 119795697 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 119798033 cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 119786904 larp1; la-related protein 1 isoform X1 K18757 LARP1; la-related protein 1
E 119796204 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 119777809 atxn2l; ataxin-2-like protein isoform X1 K23625 ATXN2_2L; ataxin 2/2L
E 119798572 atxn2; ataxin-2 isoform X1 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 119788499 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 119789214 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 119786208 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 119784934 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 119795887 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 119793543 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 119794385 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 119796390 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 119773900 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 119798451 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 119796594 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 119776058 klc1a; kinesin light chain 1 isoform X1 K10407 KLC; kinesin light chain
E 119787456 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 119789695 klc1b; kinesin light chain 1b isoform X1 K10407 KLC; kinesin light chain
E 119796631 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 119771628 myo5aa; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 119780444 myo5b; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 119792542 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 119792547 unconventional myosin-Va-like isoform X1 K10357 MYO5; myosin V
E 119792548 si:dkey-110c1.10; unconventional myosin-Va K10357 MYO5; myosin V
E 119775917 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 119775924 tubulin alpha-8 chain-like K07374 TUBA; tubulin alpha
E 119775925 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 119781585 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 119794642 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 119794882 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 119794884 tubulin alpha chain K07374 TUBA; tubulin alpha
E 119794885 tubulin alpha chain-like K07374 TUBA; tubulin alpha
E 119797472 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 119799352 tuba5; LOW QUALITY PROTEIN: tubulin alpha 5 K07374 TUBA; tubulin alpha
E 119799423 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 119799487 tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 119799521 tubulin alpha-1C chain isoform X1 K07374 TUBA; tubulin alpha
E 119799522 tuba1a; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 119799523 tuba1c; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 119773236 cytoplasmic polyadenylation element-binding protein 4-like isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119774232 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119782886 cpeb3; cytoplasmic polyadenylation element-binding protein 3 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119786453 cytoplasmic polyadenylation element-binding protein 1-like K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119787979 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 119790287 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 119784279 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 119775511 trinucleotide repeat-containing gene 6C protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 119775721 trinucleotide repeat-containing gene 6B protein-like K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 119777679 tnrc6c2; trinucleotide repeat-containing gene 6C protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 119780329 trinucleotide repeat-containing gene 6A protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 119793755 tnrc6b; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 119789184 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 119796585 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 119796778 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 119783041 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 119795004 CCR4-NOT transcription complex subunit 3-like isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 119799129 cnot4a; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 119777894 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 119797445 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 119788043 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 119790289 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 119781947 granule associated Rac and RHOG effector protein 1-like K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 119779283 dis3l2; DIS3-like exonuclease 2 isoform X1 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 119799456 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 119789069 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 119774245 protein Tob1-like K14443 TOB; protein Tob/BTG
E 119775784 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 119777657 protein Tob1-like K14443 TOB; protein Tob/BTG
E 119777719 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 119783825 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 119789339 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 119799393 protein Tob2 K14443 TOB; protein Tob/BTG
E 119784370 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 119785516 patl1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 119775808 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 119787223 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 119783303 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 119771290 upf2; regulator of nonsense transcripts 2 isoform X1 K14327 UPF2; regulator of nonsense transcripts 2
E 119783341 upf3a; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 119786305 upf3b; regulator of nonsense transcripts 3B isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 119793294 trim71; E3 ubiquitin-protein ligase TRIM71 isoform X1 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 119788339 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 119782887 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 119782888 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 119782913 interferon-induced, double-stranded RNA-activated protein kinase-like K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 119779201 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 119793129 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 119774145 YTH domain-containing family protein 1-like K20102 YTHDF; YTH domain-containing family protein
E 119778777 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 119788994 ythdf3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 119799394 YTH domain-containing family protein 1-like isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 119775602 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 119782898 tial1; nucleolysin TIAR isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 119788275 nucleolysin TIA-1-like isoform X1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 119773007 polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 119774080 embryonic polyadenylate-binding protein B-like K13126 PABPC; polyadenylate-binding protein
E 119774190 pabpc4; polyadenylate-binding protein 4 isoform X1 K13126 PABPC; polyadenylate-binding protein
E 119784825 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 119772190 stau1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 119772300 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 119772086 fxr2; fragile X mental retardation syndrome-related protein 2 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119789858 fxr1; fragile X mental retardation syndrome-related protein 1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 119790397 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 119775880 elavl1a; ELAV-like protein 1a isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 119791224 ELAV-like protein 1 isoform X1 K13088 ELAVL1; ELAV-like protein 1
E 119790078 g3bp1; ras GTPase-activating protein-binding protein 1 isoform X1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 119779086 g3bp2; ras GTPase-activating protein-binding protein 2 isoform X1 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 119791604 eif2a; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 119783666 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 119782544 eif4a2; eukaryotic initiation factor 4A-II isoform X1 K03257 EIF4A; translation initiation factor 4A
E 119795271 eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 119785553 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 119776464 eif4ba; eukaryotic translation initiation factor 4Ba isoform X1 K03258 EIF4B; translation initiation factor 4B
E 119775220 eukaryotic translation initiation factor 4 gamma 1-like isoform X1 K03260 EIF4G; translation initiation factor 4G
E 119777393 eukaryotic translation initiation factor 4 gamma 3-like K03260 EIF4G; translation initiation factor 4G
E 119784741 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 119786152 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a isoform X1 K03260 EIF4G; translation initiation factor 4G
E 119798150 eukaryotic translation initiation factor 4 gamma 2-like K03260 EIF4G; translation initiation factor 4G
E 119778784 rps6ka1; ribosomal protein S6 kinase alpha-1 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 119796076 rps6ka3b; ribosomal protein S6 kinase alpha-3 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 119796661 rps6kal; ribosomal protein S6 kinase alpha-6 isoform X1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 119797613 ribosomal protein S6 kinase alpha-2-like K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 119792518 rack1; guanine nucleotide-binding protein subunit beta-2-like 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 119775800 TNF receptor-associated factor 2-like isoform X1 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 119788282 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 119794722 traf2b; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 119784497 nxf1a; nuclear RNA export factor 1 isoform X1 K14284 NXF; nuclear RNA export factor
E 119792008 hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 119772585 tdrd3; tudor domain-containing protein 3 isoform X1 K18404 TDRD3; tudor domain-containing protein 3
E 119775792 la-related protein 4B-like K18763 LARP4; la-related protein 4
E 119776681 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 119782231 la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 119795306 larp4b; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 119789214 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 119786208 dcp1b; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 119788499 dcp2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 119781153 probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 119786514 ddx6; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 119775808 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 119787223 edc4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 119785516 patl1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 119784934 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 119795887 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 119793543 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 119794385 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 119796390 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 119773900 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 119798451 lsm7; U6 snRNA-associated Sm-like protein LSm7 isoform X1 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 119796594 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 119793331 xrn1; 5'-3' exoribonuclease 1 isoform X1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 119796696 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 119772913 zgc:103759; U8 snoRNA-decapping enzyme isoform X1 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 119797263 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 119784434 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 119774370 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 119781530 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 119784549 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 119795654 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 119785731 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 119776348 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 119778009 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 119779220 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 119786930 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 119789102 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 119797695 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 119797087 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 119798117 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 119781636 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 119781954 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 119791351 terminal nucleotidyltransferase 4A-like K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 119792929 tent4a; terminal nucleotidyltransferase 4A isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 119788306 zinc finger CCHC domain-containing protein 7-like isoform X1 K12597 AIR1_2; protein AIR1/2
E 119794216 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 119776549 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 119778032 skiv2l; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 119773031 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 119793956 wdr61; WD repeat-containing protein 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 119777894 CCR4-NOT transcription complex subunit 6 isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 119797445 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 119789184 cnot1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 119796585 CCR4-NOT transcription complex subunit 2-like K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 119796778 cnot2; CCR4-NOT transcription complex subunit 2 isoform X1 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 119783041 cnot3a; CCR4-NOT transcription complex subunit 3a isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 119795004 CCR4-NOT transcription complex subunit 3-like isoform X1 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 119799129 cnot4a; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 119788043 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 119790289 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 119774027 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 119792171 cnot10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 119799456 pan2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 119789069 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 119784676 parn; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 119788847 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 119774245 protein Tob1-like K14443 TOB; protein Tob/BTG
E 119775784 btg3; protein BTG3 K14443 TOB; protein Tob/BTG
E 119777657 protein Tob1-like K14443 TOB; protein Tob/BTG
E 119777719 btg4; protein BTG4 isoform X1 K14443 TOB; protein Tob/BTG
E 119783825 si:dkey-79d12.5; maternal B9.15 protein K14443 TOB; protein Tob/BTG
E 119789339 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 119799393 protein Tob2 K14443 TOB; protein Tob/BTG
E 119773479 nocta; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 119786952 nocturnin-like isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 119793166 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 119784673 eri2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 119797263 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 119779846 pde12; 2',5'-phosphodiesterase 12 isoform X1 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 119793958 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 119784434 helz; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 119791936 helicase with zinc finger domain 2-like K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 119774624 nrde2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 119772474 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 119795368 protein Smaug homolog 2 K27396 SMG; protein Smaug
E 119792637 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 119778414 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 119786220 zc3h12b; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 119792645 si:dkey-206d17.12; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 119794902 probable ribonuclease ZC3H12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 119797858 endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 119776949 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 119791193 smfn; small fragment nuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 119778322 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 119783128 gamma-enolase-like K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 119785266 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 119795052 eno2; gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 119797071 eno1a; enolase 1a, (alpha) isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 119790257 polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 119771915 pfkla; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 119776687 pfkmb; phosphofructokinase, muscle b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 119782232 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 119787941 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 119788873 ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 119777825 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 119792026 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 119781530 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 119774370 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 119795654 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 119778009 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 27, 2025