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Transcription Machinery - Acetivibrio thermocellus DSM 1313
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E Clo1313_1939 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E Clo1313_0474 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E Clo1313_0313 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E Clo1313_0314 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E Clo1313_0942 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E Clo1313_1324 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor
E Clo1313_0127 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_0320 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_0543 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_1330 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_2232 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_0811 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Clo1313_0441 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily K03090 sigB; RNA polymerase sigma-B factor
E Clo1313_1772 RNA polymerase, sigma 28 subunit, SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E Clo1313_1773 RNA polymerase, sigma 28 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E Clo1313_1203 RNA polymerase, sigma 28 subunit, SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E Clo1313_2111 RNA polymerase, sigma 28 subunit, SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E Clo1313_2716 RNA polymerase, sigma-24 subunit, ECF subfamily K27000 sigH; RNA polymerase sigma-H factor
E Clo1313_0104 RNA polymerase, sigma 28 subunit, SigI K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_0525 RNA polymerase, sigma 28 subunit, SigI K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_0986 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_1818 RNA polymerase, sigma 28 subunit, SigI K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_1911 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_1961 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_2174 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_2778 RNA polymerase sigma-I factor K03093 sigI; RNA polymerase sigma-I factor
E Clo1313_1725 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E Clo1313_1222 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
E Clo1313_1387 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
E Clo1313_0891 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
E Clo1313_0308 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
E Clo1313_1889 putative anti-sigma regulatory factor, serine/threonine protein kinase K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E Clo1313_2825 putative PAS/PAC sensor protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E Clo1313_1654 response regulator receiver protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E Clo1313_2148 protein serine/threonine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E Clo1313_0439 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E Clo1313_0440 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E Clo1313_0442 ATP-binding region ATPase domain protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E Clo1313_0736 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E Clo1313_0577 transcription elongation factor GreA/GreB domain-containing protein K03624 greA; transcription elongation factor GreA
E Clo1313_0438 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E Clo1313_2832 transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024