+F Repair protein KO
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DNA Repair and Recombination Proteins - Corynebacterium urealyticum DSM 7111
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CU7111_1136 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CU7111_0768 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CU7111_1753 alkA; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E CU7111_1620 mutY; putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CU7111_1800 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E CU7111_1514 putative helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E CU7111_1517 putative helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D CU7111_0082 mutT; pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CU7111_0724 putative protein with NUDIX domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CU7111_0892 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CU7111_1136 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CU7111_0378 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E CU7111_0768 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CU7111_1753 alkA; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E CU7111_1620 mutY; putative A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CU7111_0095 tagA; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E CU7111_1571 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CU7111_0776 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CU7111_1466 nei; putative endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E CU7111_1800 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E CU7111_1662 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E CU7111_0420 exoA; putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E CU7111_0718 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E CU7111_1124 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E CU7111_0734 uvrA2; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E CU7111_1106 uvrA1; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E CU7111_1112 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
E CU7111_0970 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C
E CU7111_0496 putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_0498 putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_0512 pcrA; putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_1124 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E CU7111_0718 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CU7111_0293 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CU7111_0294 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CU7111_0356 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F CU7111_0957 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F CU7111_0562 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E CU7111_0608 xseA; exodeoxyribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E CU7111_0607 xseB; exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E CU7111_1168 dnaE1; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E CU7111_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E CU7111_1337 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E CU7111_1781 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E CU7111_1833 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CU7111_0719 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CU7111_0751 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CU7111_1162 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CU7111_1214 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CU7111_1839 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E CU7111_0718 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E CU7111_0496 putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_0498 putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_0512 pcrA; putative ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CU7111_1906 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E CU7111_1370 hypothetical protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E CU7111_0860 recA; recombinase A K03553 recA; recombination protein RecA
E CU7111_0921 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E CU7111_0922 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CU7111_0920 ruvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E CU7111_0960 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E CU7111_0860 recA; recombinase A K03553 recA; recombination protein RecA
E CU7111_1617 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E CU7111_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E CU7111_0770 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CU7111_1308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E CU7111_1837 recR; recombination protein K06187 recR; recombination protein RecR
E CU7111_1077 recN; recombination and DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E CU7111_0921 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E CU7111_0922 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CU7111_0920 ruvC; Holliday junction resolvasome endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E CU7111_1887 casB; CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F CU7111_0010 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F CU7111_0005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F CU7111_1783 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F CU7111_1308 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F CU7111_1837 recR; recombination protein K06187 recR; recombination protein RecR
F CU7111_0718 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F CU7111_0734 uvrA2; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F CU7111_1106 uvrA1; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F CU7111_1112 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D CU7111_1176 dinX; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D CU7111_0860 recA; recombinase A K03553 recA; recombination protein RecA
D CU7111_0870 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CU7111_1077 recN; recombination and DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D CU7111_0397 putative DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D CU7111_0405 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D CU7111_1906 ssb1; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CU7111_1370 hypothetical protein K03111 ssb; single-strand DNA-binding protein
D CU7111_0861 recX; regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D CU7111_1425 dinG; putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CU7111_1467 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D CU7111_0082 mutT; pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CU7111_0724 putative protein with NUDIX domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CU7111_0763 putative protein with NUDIX domain K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D CU7111_0892 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CU7111_1432 nrdE; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CU7111_0135 nrdF2; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CU7111_1430 nrdF1; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024