+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cycloclasticus sp. P1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Q91_1924 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Q91_0665 Deoxyribodipyrimidine photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Q91_0547 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Q91_0084 A/G-specific adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Q91_1865 Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Q91_0377 mutT; MutT/nudix family protein/thiamine-phosphate pyrophosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q91_1912 DUTP diphosphatase superfamily K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Q91_1924 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Q91_0665 Deoxyribodipyrimidine photolyase FAD-binding protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Q91_0547 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Q91_0179 Uracil-DNA glycosylase superfamily K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E Q91_0211 Uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Q91_0084 A/G-specific adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Q91_0274 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Q91_1797 Formamidopyrimidine-DNA glycosylase (FAPY-DNA glycosylase, DNA-(Apurinic or apyrimidinic site) lyase MutM, AP lyase MutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Q91_1865 Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Q91_0047 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Q91_1045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Q91_0680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Q91_0199 polI; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Q91_0229 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Q91_0771 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Q91_1572 uvrC; Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Q91_0184 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q91_0199 polI; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Q91_0680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Q91_1722 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Q91_1721 rpoC; DNA-directed RNA polymerase subunit beta K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Q91_1691 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Q91_1832 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Q91_0837 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Q91_0857 mutS; Mismatch repair ATPase K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Q91_1555 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Q91_0534 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E Q91_0613 Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Q91_1435 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Q91_1025 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Q91_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Q91_0397 DNA polymerase III, chi subunit superfamily K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Q91_1662 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Q91_1363 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Q91_0956 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Q91_1566 dnaZX; DNA polymerase III, tau and gamma subunits, DNA elongation factor III K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Q91_0680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Q91_0184 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Q91_0231 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Q91_0859 recA; recombinase A K03553 recA; recombination protein RecA E Q91_0468 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E Q91_0469 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Q91_0467 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Q91_1935 priA; Replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Q91_0534 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E Q91_0859 recA; recombinase A K03553 recA; recombination protein RecA E Q91_0710 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms E Q91_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E Q91_1829 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Q91_1045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Q91_1078 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E Q91_1564 recR; Gap repair protein with type I DNA topoisomerase domain K06187 recR; recombination protein RecR E Q91_1463 recN; ATPase involved in DNA repair, RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Q91_0468 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E Q91_0469 Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Q91_0467 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E Q91_1881 ATPase family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Q91_0682 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Q91_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Q91_2101 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Q91_0945 hupB; Integration host factor, beta subunit K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Q91_1045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Q91_1078 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F Q91_1564 recR; Gap repair protein with type I DNA topoisomerase domain K06187 recR; recombination protein RecR F Q91_0680 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Q91_1858 fis; tRNA-dihydrouridine synthase B K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Q91_0778 Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F Q91_0691 Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F Q91_0534 sbcB; Exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F Q91_2141 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Q91_0229 uvrA; Excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Q91_0771 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Q91_0958 DNA-directed DNA polymerase protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Q91_1145 DNA polymerase IV K03502 umuC; DNA polymerase V D Q91_1144 Peptidase S24-like domain protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D Q91_0859 recA; recombinase A K03553 recA; recombination protein RecA D Q91_1463 recN; ATPase involved in DNA repair, RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Q91_0231 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D Q91_0860 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D Q91_2019 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Q91_0736 ATP-dependent helicase YoaA-like protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D Q91_0377 mutT; MutT/nudix family protein/thiamine-phosphate pyrophosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Q91_1912 DUTP diphosphatase superfamily K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Q91_0919 Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Q91_0895 Ribonucleotide reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Q91_0918 Ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024