+E Transcription factors KO
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Transcription Factors - Frigidibacter mobilis
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D AKL17_1941 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D AKL17_1636 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D AKL17_0834 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D AKL17_1503 hypothetical protein K07506 K07506; AraC family transcriptional regulator
D AKL17_0538 methylated-DNA--[protein]-cysteine S-methyltransferase Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AKL17_1320 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AKL17_1321 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D AKL17_0017 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D AKL17_4702 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D AKL17_1904 AraC family transcriptional regulator with amidase-like domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D AKL17_2206 transcriptional regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKL17_4688 AHCY transcriptional activator HvrB K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKL17_3897 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKL17_3609 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKL17_1305 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D AKL17_3717 LysR family transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D AKL17_3028 HTH-type transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D AKL17_3993 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AKL17_2098 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D AKL17_2824 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D AKL17_0083 transcriptional regulator protein K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D AKL17_1611 Nac protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D AKL17_1646 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D AKL17_1067 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D AKL17_2061 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D AKL17_3743 glycerol-3-phosphate transcriptional regulator protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D AKL17_1286 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AKL17_2275 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AKL17_2363 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AKL17_3065 transcriptional regulator protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D AKL17_4597 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D AKL17_3291 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D AKL17_3369 phosphonates metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D AKL17_2167 GntR family transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D AKL17_2266 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKL17_3818 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D AKL17_0536 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_0036 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_1265 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_3243 DNA-binding transcriptional regulator GlcC K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_3255 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_3289 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_2251 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D AKL17_3245 GntR family transcriptional regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D AKL17_1639 GntR family transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
D AKL17_2886 GntR family transcriptional regulator K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D AKL17_2818 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D AKL17_1506 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D AKL17_1979 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D AKL17_2546 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D AKL17_4457 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AKL17_4472 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D AKL17_3p0027 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D AKL17_1925 AsnC/Lrp family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKL17_3021 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKL17_3580 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D AKL17_0195 putative AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D AKL17_2902 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D AKL17_3875 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D AKL17_1759 glutamate uptake regulatory protein, putative K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D AKL17_2697 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D AKL17_0453 transcriptional regulator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D AKL17_4365 alkB1GHJ regulator K21748 alkS; LuxR family transcriptional regulator, alkane degradation pathway regulator
C MarR family
D AKL17_3p0011 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D AKL17_2940 transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D AKL17_0087 MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D AKL17_4281 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D AKL17_4096 Cu-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D AKL17_3p0106 Cu-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D AKL17_1693 ferric uptake regulation protein, putative K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D AKL17_1141 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D AKL17_0876 ferric-uptake regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D AKL17_3p0166 regulatory protein IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKL17_3725 regulatory proteins, IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D AKL17_3615 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKL17_3402 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKL17_3604 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKL17_3616 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D AKL17_3094 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D AKL17_3984 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D AKL17_4748 Crp-Fnr regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D AKL17_3p0077 hypothetical protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D AKL17_1388 Crp/FNR family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D AKL17_1385 Crp/FNR family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D AKL17_1408 FeS assembly cluster transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D AKL17_2018 transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D AKL17_2476 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D AKL17_1601 regulatory protein, ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AKL17_2966 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D AKL17_2950 arsenate reductase, putative K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4]
C XRE family
D AKL17_2810 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D AKL17_1997 helix-turn-helix domain-containing protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D AKL17_3p0097 DtxR family iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D AKL17_2221 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D AKL17_1245 helix-turn-helix domain-containing protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D AKL17_3475 helix-turn-helix domain-containing protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D AKL17_2256 fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D AKL17_1567 Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D AKL17_1592 molybdenum-binding transcriptional regulator K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D AKL17_3022 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D AKL17_1218 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D AKL17_3p0051 nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_4542 chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_1p0097 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_1p0100 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_4058 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_3p0038 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D AKL17_2860 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D AKL17_4548 heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D AKL17_2341 transcriptional activator, putative K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D AKL17_0829 transcriptional regulator K05346 deoR; deoxyribonucleoside regulator
D AKL17_4212 hypothetical protein K07735 algH; putative transcriptional regulator
D AKL17_2760 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D AKL17_3003 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D AKL17_2835 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0