+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Desulfocurvibacter africanus subsp. africanus

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D Desaf_2406 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases D Desaf_2834 Polynucleotide 5'-hydroxyl-kinase K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C Desaf_1183 GTP-binding protein Era-like-protein K03595 era; GTPase C Desaf_1983 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C Desaf_0196 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Desaf_0248 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Desaf_1570 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C Desaf_1900 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Desaf_3808 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor C Desaf_3743 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA C Desaf_2340 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB C Desaf_0227 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D Desaf_3107 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Desaf_1518 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Desaf_3141 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Desaf_3093 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Desaf_2741 Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Desaf_3416 Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Desaf_1598 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Desaf_3213 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D Desaf_1172 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Desaf_0008 Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Desaf_2743 Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Desaf_1006 Protein of unknown function methylase putative K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Desaf_1994 rRNA (guanine-N(2)-)-methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Desaf_1272 ribosomal RNA methyltransferase RrmJ/FtsJ K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Desaf_1188 Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Desaf_3213 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Desaf_1597 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Desaf_3019 pseudouridine synthase Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Desaf_1200 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Desaf_3196 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Desaf_3227 Dephospho-CoA kinase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C Desaf_3086 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C Desaf_0507 Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM C Desaf_1567 Ribosomal protein S12 methylthiotransferase rimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C Desaf_3811 YcaO-domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor C Desaf_2151 Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C Desaf_2406 Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3] C Desaf_0460 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] C Desaf_3376 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C Desaf_1993 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] C Desaf_3161 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C Desaf_1183 GTP-binding protein Era-like-protein K03595 era; GTPase C Desaf_2154 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C Desaf_2861 GTP-binding protein engA K03977 engA; GTPase C Desaf_1983 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-] C Desaf_1844 GTP-binding proten HflX K03665 hflX; GTPase B Other maturation factors C Desaf_0150 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C Desaf_2427 hypothetical protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Desaf_2448 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C Desaf_3747 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C Desaf_3742 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP C Desaf_3310 iojap-like protein K09710 ybeB; ribosome-associated protein C Desaf_3804 metalloprotease ybeY K07042 ybeY; probable rRNA maturation factor C Desaf_3317 Uncharacterized protein family UPF0307 K09889 yjgA; ribosome-associated protein C Desaf_3168 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor C Desaf_0837 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase C Desaf_2353 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 22, 2025