+E Transcription factors KO #

  Transcription Factors - Desulfosarcina alkanivorans

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D DSCA_47620 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D DSCA_33740 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D DSCA_42590 AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] C LysR family D DSCA_24920 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator C DeoR family D DSCA_41040 glpR_1; DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D DSCA_41880 glpR_2; DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family C GntR family D DSCA_45490 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D DSCA_54320 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D DSCA_44430 fadR_1; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D DSCA_12810 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_15320 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_24100 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_24900 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_43970 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_45590 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_46160 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_46910 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_49690 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_52530 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_56230 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_59330 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D DSCA_64570 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D DSCA_03240 AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D DSCA_35570 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D DSCA_36650 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D DSCA_51910 fadR_2; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D DSCA_34100 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DSCA_39650 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D DSCA_22220 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D DSCA_24310 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D DSCA_37500 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D DSCA_60540 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D DSCA_22710 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_25730 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_25780 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_29170 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_34580 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_50050 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D DSCA_47690 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DSCA_59070 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D DSCA_64100 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D DSCA_23370 hypothetical protein K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation C MarR family D DSCA_21840 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor D DSCA_37790 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D DSCA_46020 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D DSCA_58750 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D DSCA_58920 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D DSCA_38490 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D DSCA_44380 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D DSCA_29870 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D DSCA_43350 furR1; transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D DSCA_28230 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D DSCA_20800 iclR; IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D DSCA_30010 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D DSCA_17900 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D DSCA_21140 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D DSCA_33600 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D DSCA_12800 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_20860 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_30050 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_32550 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_35160 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_52320 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_52330 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_55460 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_59870 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_61410 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D DSCA_55110 transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D DSCA_17130 transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family C ArsR family D DSCA_62450 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D DSCA_16980 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family C Other families D DSCA_15390 transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D DSCA_25980 iron repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D DSCA_38590 hypothetical protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D DSCA_39570 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D DSCA_20400 hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D DSCA_25760 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D DSCA_00220 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D DSCA_24770 hypothetical protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D DSCA_42330 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D DSCA_16330 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D DSCA_06830 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D DSCA_19810 ATPase AAA K12146 hyfR; hydrogenase-4 transcriptional activator D DSCA_53560 hypothetical protein K12146 hyfR; hydrogenase-4 transcriptional activator D DSCA_53760 hyfR; hydrogenase-4 transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator D DSCA_59220 sigma-54-dependent Fis family transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator D DSCA_16190 ATPase AAA K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_37340 ATPase AAA K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_40460 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_50350 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_50550 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_63920 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator D DSCA_00160 Fis family transcriptional regulator K02584 nifA; Nif-specific regulatory protein D DSCA_49880 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein D DSCA_56090 nifA; sigma-54-dependent Fis family transcriptional regulator K02584 nifA; Nif-specific regulatory protein D DSCA_58310 hypothetical protein K02584 nifA; Nif-specific regulatory protein D DSCA_44780 sigma-54-dependent Fis family transcriptional regulator K06714 rocR; arginine utilization regulatory protein D DSCA_45950 sigma-54-dependent Fis family transcriptional regulator K06714 rocR; arginine utilization regulatory protein D DSCA_57480 rocR; arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein D DSCA_43630 hypothetical protein K02019 modE; molybdate transport system regulatory protein D DSCA_51520 hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D DSCA_39590 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D DSCA_09390 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DSCA_52070 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D DSCA_56520 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D DSCA_12560 hypothetical protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D DSCA_10550 amino acid-binding protein K03567 gcvR; glycine cleavage system transcriptional repressor D DSCA_46660 amino acid-binding protein K03567 gcvR; glycine cleavage system transcriptional repressor D DSCA_49050 hypothetical protein K07733 alpA; prophage regulatory protein D DSCA_60030 hypothetical protein K07733 alpA; prophage regulatory protein D DSCA_14030 UPF0301 protein K07735 algH; putative transcriptional regulator D DSCA_29670 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D DSCA_39190 dksA_2; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D DSCA_42690 dksA_3; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D DSCA_45530 dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor D DSCA_30450 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D DSCA_58150 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0