+E Transcription factors KO
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Transcription Factors - Desulfosarcina alkanivorans
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D DSCA_47620 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D DSCA_33740 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D DSCA_42590 AraC family transcriptional regulator K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D DSCA_24920 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
C DeoR family
D DSCA_41040 glpR_1; DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D DSCA_41880 glpR_2; DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
C GntR family
D DSCA_45490 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DSCA_54320 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D DSCA_44430 fadR_1; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D DSCA_12810 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_15320 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_24100 pdhR; GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_24900 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_43970 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_45590 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_46160 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_46910 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_49690 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_52530 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_56230 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_59330 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D DSCA_64570 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D DSCA_03240 AcrR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D DSCA_35570 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D DSCA_36650 hypothetical protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D DSCA_51910 fadR_2; fatty acid metabolism regulator protein K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein
D DSCA_34100 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DSCA_39650 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D DSCA_22220 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D DSCA_24310 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D DSCA_37500 hypothetical protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D DSCA_60540 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D DSCA_22710 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_25730 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_25780 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_29170 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_34580 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_50050 hypothetical protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D DSCA_47690 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DSCA_59070 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D DSCA_64100 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D DSCA_23370 hypothetical protein K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
C MarR family
D DSCA_21840 MarR family transcriptional regulator K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D DSCA_37790 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D DSCA_46020 hypothetical protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D DSCA_58750 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D DSCA_58920 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D DSCA_38490 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DSCA_44380 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D DSCA_29870 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D DSCA_43350 furR1; transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D DSCA_28230 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D DSCA_20800 iclR; IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D DSCA_30010 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D DSCA_17900 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D DSCA_21140 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D DSCA_33600 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D DSCA_12800 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_20860 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_30050 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_32550 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_35160 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_52320 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_52330 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_55460 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_59870 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_61410 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D DSCA_55110 transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D DSCA_17130 transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
C ArsR family
D DSCA_62450 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D DSCA_16980 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D DSCA_15390 transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D DSCA_25980 iron repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D DSCA_38590 hypothetical protein K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D DSCA_39570 iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D DSCA_20400 hypothetical protein K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DSCA_25760 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D DSCA_00220 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D DSCA_24770 hypothetical protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D DSCA_42330 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D DSCA_16330 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D DSCA_06830 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D DSCA_19810 ATPase AAA K12146 hyfR; hydrogenase-4 transcriptional activator
D DSCA_53560 hypothetical protein K12146 hyfR; hydrogenase-4 transcriptional activator
D DSCA_53760 hyfR; hydrogenase-4 transcriptional activator K12146 hyfR; hydrogenase-4 transcriptional activator
D DSCA_59220 sigma-54-dependent Fis family transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator
D DSCA_16190 ATPase AAA K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_37340 ATPase AAA K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_40460 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_50350 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_50550 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_63920 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
D DSCA_00160 Fis family transcriptional regulator K02584 nifA; Nif-specific regulatory protein
D DSCA_49880 nifA-2; Nif-specific regulatory protein K02584 nifA; Nif-specific regulatory protein
D DSCA_56090 nifA; sigma-54-dependent Fis family transcriptional regulator K02584 nifA; Nif-specific regulatory protein
D DSCA_58310 hypothetical protein K02584 nifA; Nif-specific regulatory protein
D DSCA_44780 sigma-54-dependent Fis family transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D DSCA_45950 sigma-54-dependent Fis family transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D DSCA_57480 rocR; arginine utilization regulatory protein RocR K06714 rocR; arginine utilization regulatory protein
D DSCA_43630 hypothetical protein K02019 modE; molybdate transport system regulatory protein
D DSCA_51520 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D DSCA_39590 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D DSCA_09390 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DSCA_52070 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D DSCA_56520 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D DSCA_12560 hypothetical protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D DSCA_10550 amino acid-binding protein K03567 gcvR; glycine cleavage system transcriptional repressor
D DSCA_46660 amino acid-binding protein K03567 gcvR; glycine cleavage system transcriptional repressor
D DSCA_49050 hypothetical protein K07733 alpA; prophage regulatory protein
D DSCA_60030 hypothetical protein K07733 alpA; prophage regulatory protein
D DSCA_14030 UPF0301 protein K07735 algH; putative transcriptional regulator
D DSCA_29670 dksA_1; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D DSCA_39190 dksA_2; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D DSCA_42690 dksA_3; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor
D DSCA_45530 dksA/traR C4-type zinc finger family protein K06204 dksA; RNA polymerase-binding transcription factor
D DSCA_30450 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D DSCA_58150 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0