+D GENES KO
#
KEGG Orthology (KO) - Demequina capsici
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:dcp00010]
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_07380 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_10060 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_07475 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RN607_06135 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_00925 fbaA; (GenBank) class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RN607_07410 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RN607_07420 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RN607_07415 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RN607_02235 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RN607_07530 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RN607_07050 ppdK; (GenBank) pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RN607_05365 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RN607_05985 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_11410 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RN607_13925 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_04625 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RN607_13260 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_05775 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RN607_03130 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RN607_06360 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RN607_13700 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:dcp00020]
D RN607_03185 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RN607_06270 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RN607_11365 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RN607_10835 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_11400 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RN607_11405 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RN607_03260 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RN607_03255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RN607_03270 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RN607_03265 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RN607_02990 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_06830 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RN607_03130 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RN607_05365 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RN607_05985 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:dcp00030]
D RN607_07380 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_10060 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_07385 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_08070 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_07395 pgl; (GenBank) 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D RN607_13650 beta-propeller fold lactonase family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D RN607_06290 gndA; (GenBank) NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RN607_08075 gnd; (GenBank) decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RN607_06730 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RN607_00810 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_00815 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_07375 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_08065 tal; (GenBank) transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RN607_04205 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RN607_11520 phosphoketolase family protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D RN607_03320 deoC; (GenBank) deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_02740 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RN607_11220 gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_00925 fbaA; (GenBank) class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RN607_07475 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RN607_06135 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:dcp00040]
D RN607_02385 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RN607_13360 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RN607_01450 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D RN607_06730 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RN607_01455 araA; (GenBank) L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D RN607_09895 xylB; (GenBank) xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D RN607_09890 xylA; (GenBank) xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RN607_10720 rhaI; (GenBank) L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D RN607_10735 rhamnulokinase family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D RN607_10800 class II aldolase/adducin family protein K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
C 00051 Fructose and mannose metabolism [PATH:dcp00051]
D RN607_03000 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RN607_02380 manA; (GenBank) mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RN607_03360 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RN607_10995 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RN607_03275 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RN607_02055 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RN607_10720 rhaI; (GenBank) L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D RN607_10735 rhamnulokinase family protein K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D RN607_10800 class II aldolase/adducin family protein K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D RN607_07475 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RN607_06135 pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D RN607_02875 pfkB; (GenBank) 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D RN607_09890 xylA; (GenBank) xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_00925 fbaA; (GenBank) class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RN607_07410 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RN607_02060 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D RN607_04205 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RN607_02870 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RN607_03430 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RN607_03420 mtlA; (GenBank) mannitol-specific PTS transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D RN607_13580 HAD-IA family hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
C 00052 Galactose metabolism [PATH:dcp00052]
D RN607_04625 aldose 1-epimerase family protein K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RN607_13260 aldose epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D RN607_01440 galK; (GenBank) galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_11290 galactokinase family protein K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_01435 galE; (GenBank) UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RN607_13360 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_01255 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_08195 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13870 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13405 glf; (GenBank) UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RN607_13895 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D RN607_01455 araA; (GenBank) L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D RN607_07475 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RN607_05830 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RN607_04195 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:dcp00053]
D RN607_02385 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RN607_01450 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:dcp00500]
D RN607_05830 glycoside hydrolase family 13 protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D RN607_01520 gtfA; (GenBank) sucrose phosphorylase K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D RN607_13360 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RN607_00485 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01490 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03455 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03460 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_04710 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_14160 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01425 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10405 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10505 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_01275 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D RN607_12690 glycosyl transferase K00702 E2.4.1.20; cellobiose phosphorylase [EC:2.4.1.20]
D RN607_06360 glycoside hydrolase family 1 protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RN607_13700 family 1 glycosylhydrolase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D RN607_07775 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RN607_10450 glgB; (GenBank) 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RN607_00205 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D RN607_02515 alpha-amylase family glycosyl hydrolase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D RN607_04195 alpha-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D RN607_04105 malQ; (GenBank) 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D RN607_10445 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D RN607_07770 glgA; (GenBank) glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RN607_05875 family 65 glycosyl hydrolase domain-containing protein K00691 mapA; maltose phosphorylase [EC:2.4.1.8]
D RN607_10795 pgmB; (GenBank) beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D RN607_10440 glgX; (GenBank) glycogen debranching protein GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D RN607_06310 treY; (GenBank) malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D RN607_06305 treZ; (GenBank) malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D RN607_02765 glycosyl hydrolase family 65 protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_07380 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_10060 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_03000 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00620 Pyruvate metabolism [PATH:dcp00620]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_05365 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RN607_05985 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_03600 pflB; (GenBank) formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RN607_13925 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RN607_11480 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RN607_11475 pta; (GenBank) phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RN607_07530 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_10740 alpha-hydroxy acid oxidase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D RN607_11410 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RN607_06965 poxB; (GenBank) ubiquinone-dependent pyruvate dehydrogenase K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D RN607_06830 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_02990 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RN607_03130 phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D RN607_07050 ppdK; (GenBank) pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_04225 cimA; (GenBank) citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D RN607_05065 leuA; (GenBank) 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:dcp00630]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_03185 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RN607_06270 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_03415 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RN607_14230 catalase K03781 katE; catalase [EC:1.11.1.6]
D RN607_14065 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RN607_00210 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RN607_00220 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_00225 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RN607_11525 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RN607_06325 fucO; (GenBank) lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D RN607_10835 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RN607_11315 purU; (GenBank) formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:dcp00640]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_11480 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RN607_11475 pta; (GenBank) phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RN607_13380 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RN607_13375 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RN607_13370 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_03600 pflB; (GenBank) formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_03415 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RN607_11405 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RN607_11400 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RN607_02085 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RN607_06270 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RN607_11410 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RN607_07525 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D RN607_06325 fucO; (GenBank) lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:dcp00650]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RN607_03260 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RN607_03255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RN607_03270 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RN607_03265 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RN607_07105 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_03635 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03640 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03600 pflB; (GenBank) formate C-acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_05650 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RN607_05655 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RN607_09825 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RN607_09820 ilvN; (GenBank) acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:dcp00660]
D RN607_09825 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RN607_09820 ilvN; (GenBank) acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RN607_11405 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RN607_11400 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RN607_02425 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D RN607_04380 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RN607_04385 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RN607_09810 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:dcp00562]
D RN607_06225 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RN607_13970 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D RN607_06425 CDP-alcohol phosphatidyltransferase family protein K27681 pgsA; phosphatidylinositol phosphate synthase [EC:2.7.8.-]
D RN607_02085 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RN607_07410 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:dcp00190]
D RN607_12485 ndhC; (GenBank) NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RN607_12480 NADH-quinone oxidoreductase subunit B family protein K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RN607_12475 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RN607_12470 NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RN607_12465 nuoE; (GenBank) NADH-quinone oxidoreductase subunit NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RN607_12460 nuoF; (GenBank) NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RN607_12455 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RN607_12450 nuoH; (GenBank) NADH-quinone oxidoreductase subunit NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RN607_12445 nuoI; (GenBank) NADH-quinone oxidoreductase subunit NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RN607_12440 NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RN607_12435 nuoK; (GenBank) NADH-quinone oxidoreductase subunit NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RN607_12430 nuoL; (GenBank) NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RN607_12425 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RN607_12420 nuoN; (GenBank) NADH-quinone oxidoreductase subunit NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RN607_02985 NAD(P)/FAD-dependent oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D RN607_03260 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RN607_03255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RN607_03270 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RN607_03265 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RN607_06085 Rieske 2Fe-2S domain-containing protein K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RN607_06080 cytochrome bc complex cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D RN607_06090 cytochrome c K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D RN607_07370 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RN607_06065 cytochrome c oxidase subunit 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D RN607_06095 heme-copper oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D RN607_06060 ctaD; (GenBank) cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D RN607_06055 coxB; (GenBank) cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D RN607_07880 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RN607_04540 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RN607_04535 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RN607_10550 atpA; (GenBank) F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RN607_10540 atpD; (GenBank) F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RN607_10545 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RN607_10555 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RN607_10535 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RN607_10570 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RN607_10560 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RN607_10565 atpE; (GenBank) ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RN607_02480 V-type ATP synthase subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D RN607_02475 V-type ATP synthase subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D RN607_02470 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D RN607_02495 ATP synthase subunit C K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D RN607_02120 inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D RN607_01585 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:dcp00710]
D RN607_07415 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RN607_07420 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_00925 fbaA; (GenBank) class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RN607_00810 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_00815 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_07375 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_04205 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D RN607_07410 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RN607_06730 rpe; (GenBank) ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D RN607_08065 tal; (GenBank) transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D RN607_07050 ppdK; (GenBank) pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:dcp00720]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_07050 ppdK; (GenBank) pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RN607_06830 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_02990 class II fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RN607_03260 sdhA; (GenBank) succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RN607_03255 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RN607_03270 sdhC; (GenBank) succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RN607_03265 succinate dehydrogenase hydrophobic membrane anchor subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RN607_11400 sucD; (GenBank) succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RN607_11405 sucC; (GenBank) ADP-forming succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_11365 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RN607_06270 acnA; (GenBank) aconitate hydratase AcnA K27802 acnA; aconitate hydratase A / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D RN607_11300 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RN607_00240 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RN607_01940 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RN607_11475 pta; (GenBank) phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RN607_11480 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:dcp00680]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_00925 fbaA; (GenBank) class II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D RN607_07475 ATP-dependent 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D RN607_11955 LLM class flavin-dependent oxidoreductase K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2]
D RN607_11480 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RN607_11475 pta; (GenBank) phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D RN607_02235 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RN607_08515 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RN607_02375 serC; (GenBank) phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RN607_07780 serB; (GenBank) phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RN607_11985 cofC; (GenBank) 2-phospho-L-lactate guanylyltransferase K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105]
D RN607_11980 cofD; (GenBank) 2-phospho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
D RN607_11990 cofE; (GenBank) coenzyme F420-0:L-glutamate ligase K24998 fbiB; dehydro coenzyme F420 reductase / coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:1.3.8.17 6.3.2.31 6.3.2.34]
C 00910 Nitrogen metabolism [PATH:dcp00910]
D RN607_04775 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RN607_04780 molybdopterin oxidoreductase family protein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D RN607_04785 FAD-dependent oxidoreductase K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D RN607_04790 nirB; (GenBank) nitrite reductase large subunit NirB K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D RN607_04795 nirD; (GenBank) nitrite reductase small subunit NirD K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D RN607_11575 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_07540 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RN607_07535 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RN607_01475 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:dcp00920]
D RN607_05595 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RN607_05600 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D RN607_04670 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D RN607_13340 cysN; (GenBank) sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RN607_13335 cysD; (GenBank) sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RN607_13330 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RN607_12380 phosphoadenylyl-sulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D RN607_12375 nitrite/sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D RN607_09425 FAD/NAD(P)-binding oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D RN607_04720 DoxX family protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D RN607_09070 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RN607_09600 epsC; (GenBank) serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RN607_05690 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RN607_09595 cysK; (GenBank) cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RN607_02070 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RN607_02110 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RN607_01105 metZ; (GenBank) O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:dcp00061]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_05340 acyl carrier protein K02078 acpP; acyl carrier protein
D RN607_05350 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RN607_05345 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RN607_05335 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RN607_05610 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_07015 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:dcp00071]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:dcp00074]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_11640 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RN607_05340 acyl carrier protein K02078 acpP; acyl carrier protein
D RN607_05350 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RN607_07795 fabI; (GenBank) enoyl-ACP reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D RN607_03415 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:dcp00561]
D RN607_11525 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RN607_13925 NAD(P)-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D RN607_00800 FGGY family carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RN607_09380 glpK; (GenBank) glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RN607_07930 HAD-IIA family hydrolase K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D RN607_06130 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RN607_07325 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RN607_06785 diacylglycerol kinase family protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RN607_13895 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:dcp00564]
D RN607_04425 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RN607_09385 glycerol-3-phosphate dehydrogenase/oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D RN607_06130 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RN607_07325 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RN607_06785 diacylglycerol kinase family protein K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D RN607_07315 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RN607_08740 glycerophosphodiester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D RN607_08780 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RN607_08595 pgsA; (GenBank) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D RN607_06850 CDP-alcohol phosphatidyltransferase family protein K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:dcp00600]
D RN607_13710 glycoside hydrolase family 30 beta sandwich domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D RN607_01255 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_08195 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13870 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13895 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:dcp00592]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:dcp01040]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RN607_04090 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:dcp00230]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_02740 ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D RN607_01315 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RN607_00990 purD; (GenBank) phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D RN607_11385 purN; (GenBank) phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RN607_00885 purT; (GenBank) formate-dependent phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D RN607_01260 purL; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurL K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D RN607_01020 purS; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D RN607_01025 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RN607_01320 purM; (GenBank) phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D RN607_11045 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D RN607_11040 purE; (GenBank) 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D RN607_00995 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RN607_13470 purB; (GenBank) adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RN607_11380 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RN607_09030 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RN607_09335 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RN607_03365 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RN607_10080 deoD; (GenBank) purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RN607_08405 polyphenol oxidase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RN607_02135 hpt; (GenBank) hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D RN607_11565 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RN607_11585 guaB; (GenBank) IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RN607_09025 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RN607_03795 rdgB; (GenBank) RdgB/HAM1 family non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D RN607_11450 guaA; (GenBank) glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_11495 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_11550 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_03695 nucleoside phosphorylase K26212 K26212; guanosine phosphorylase [EC:2.4.2.15]
D RN607_10040 amidohydrolase family protein K01487 guaD; guanine deaminase [EC:3.5.4.3]
D RN607_06695 gmk; (GenBank) guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RN607_10020 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RN607_10015 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RN607_07040 nrdD; (GenBank) anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D RN607_05240 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RN607_06410 dgt; (GenBank) dNTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D RN607_06490 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RN607_02850 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RN607_05730 GTP pyrophosphokinase family protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D RN607_00930 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RN607_03315 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D RN607_09005 adenine deaminase C-terminal domain-containing protein K01486 ade; adenine deaminase [EC:3.5.4.2]
D RN607_11740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RN607_06420 HIT domain-containing protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D RN607_13340 cysN; (GenBank) sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RN607_13335 cysD; (GenBank) sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RN607_05750 NAD(P)-binding domain-containing protein K22879 hpyO; FAD-dependent urate hydroxylase [EC:1.14.13.113]
D RN607_10095 uraH; (GenBank) hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D RN607_10100 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase K16840 hpxQ; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [EC:4.1.1.97]
D RN607_10010 allB; (GenBank) allantoinase AllB K01466 allB; allantoinase [EC:3.5.2.5]
D RN607_10120 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RN607_10125 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00240 Pyrimidine metabolism [PATH:dcp00240]
D RN607_06680 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RN607_06675 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RN607_06665 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RN607_06670 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D RN607_01945 pyrD; (GenBank) dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RN607_06005 quinone-dependent dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D RN607_00860 pyrE; (GenBank) orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D RN607_06685 pyrF; (GenBank) orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D RN607_08790 pyrH; (GenBank) UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RN607_09025 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RN607_03395 nucleoside triphosphate pyrophosphatase K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RN607_07895 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RN607_07330 cmk; (GenBank) (d)CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RN607_09335 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RN607_12845 upp; (GenBank) uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D RN607_06660 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RN607_03300 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D RN607_07040 nrdD; (GenBank) anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D RN607_12695 dcd; (GenBank) dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RN607_10020 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RN607_10015 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RN607_01795 tmk; (GenBank) dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RN607_06235 dut; (GenBank) dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RN607_11855 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RN607_03305 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D RN607_01530 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D RN607_08620 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RN607_12755 hydA; (GenBank) dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RN607_12760 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
D RN607_10225 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RN607_11615 malonic semialdehyde reductase K09019 rutE; 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:dcp00250]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_02195 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RN607_14020 ald; (GenBank) alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RN607_07995 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RN607_07990 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RN607_00930 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D RN607_13470 purB; (GenBank) adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D RN607_06665 aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D RN607_07105 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_03635 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03640 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_07540 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RN607_07535 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D RN607_11575 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RN607_06875 proline dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_06680 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RN607_06675 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RN607_01025 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RN607_11645 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RN607_01315 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:dcp00260]
D RN607_12965 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RN607_12970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RN607_10675 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RN607_10665 thrB; (GenBank) homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RN607_10670 thrC; (GenBank) threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RN607_00185 beta-eliminating lyase-related protein K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RN607_11525 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D RN607_02235 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RN607_08515 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RN607_02375 serC; (GenBank) phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RN607_07780 serB; (GenBank) phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D RN607_00210 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RN607_00220 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_00225 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
D RN607_07885 ilvA; (GenBank) threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RN607_09650 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RN607_01065 amino acid racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RN607_07550 trpA; (GenBank) tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RN607_07555 trpB; (GenBank) tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:dcp00270]
D RN607_09600 epsC; (GenBank) serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D RN607_05690 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RN607_09595 cysK; (GenBank) cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D RN607_00325 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RN607_00250 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RN607_09165 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RN607_06710 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RN607_02805 mtnN; (GenBank) 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D RN607_08405 polyphenol oxidase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RN607_00135 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RN607_11910 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RN607_11975 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D RN607_02795 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RN607_02800 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RN607_12965 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RN607_12970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RN607_10675 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RN607_10665 thrB; (GenBank) homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D RN607_02070 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RN607_02110 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D RN607_02075 bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D RN607_01105 metZ; (GenBank) O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D RN607_06390 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09630 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09805 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_09070 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RN607_11410 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RN607_01065 amino acid racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RN607_11360 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_11540 lactate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RN607_09075 pyridoxal-phosphate dependent enzyme K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D RN607_08515 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RN607_02375 serC; (GenBank) phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:dcp00280]
D RN607_06390 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09630 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09805 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_13380 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RN607_13375 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RN607_13370 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_03390 biotin carboxylase N-terminal domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA/long-chain acyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
D RN607_03415 acyl-CoA carboxylase subunit beta K27094 accD5; propionyl-CoA/long-chain acyl-CoA carboxylase carboxyl transferase subunit [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D RN607_02085 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_05650 CoA transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D RN607_05655 CoA transferase subunit B K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:dcp00290]
D RN607_07885 ilvA; (GenBank) threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RN607_09650 pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D RN607_04380 leuC; (GenBank) 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D RN607_04385 leuD; (GenBank) 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D RN607_09810 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D RN607_09825 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RN607_09820 ilvN; (GenBank) acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RN607_09815 ilvC; (GenBank) ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RN607_09845 ilvD; (GenBank) dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RN607_06390 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09630 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09805 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_04225 cimA; (GenBank) citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D RN607_05065 leuA; (GenBank) 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:dcp00300]
D RN607_10675 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D RN607_12965 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RN607_12970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RN607_08615 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RN607_08655 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RN607_03195 dapD; (GenBank) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RN607_08010 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RN607_03205 dapE; (GenBank) succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RN607_08550 dapF; (GenBank) diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RN607_10700 lysA; (GenBank) diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D RN607_14065 PLP-dependent aminotransferase family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D RN607_08450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RN607_08445 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:dcp00310]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_01065 amino acid racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_03635 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03640 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:dcp00220]
D RN607_08005 argF; (GenBank) ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D RN607_07995 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RN607_07990 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RN607_02670 arginine deiminase-related protein K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RN607_09405 arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D RN607_01025 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_06680 carB; (GenBank) carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D RN607_06675 carA; (GenBank) glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D RN607_11575 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08020 argJ; (GenBank) bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D RN607_08015 argB; (GenBank) acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D RN607_08025 argC; (GenBank) N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D RN607_08010 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RN607_11950 M20/M25/M40 family metallo-hydrolase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:dcp00330]
D RN607_13915 agmatine deiminase family protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D RN607_01355 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_10130 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13920 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_02670 arginine deiminase-related protein K27545 argZ; arginine dihydrolase [EC:3.5.3.27]
D RN607_13125 proC; (GenBank) pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D RN607_06875 proline dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RN607_02665 ornithine cyclodeaminase K01750 ocd; ornithine cyclodeaminase [EC:4.3.1.12]
D RN607_04565 proB; (GenBank) glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RN607_04585 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:dcp00340]
D RN607_06760 hisG; (GenBank) ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D RN607_06755 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D RN607_07585 hisI; (GenBank) phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D RN607_08300 priA; (GenBank) bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RN607_08310 hisH; (GenBank) imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D RN607_07600 hisF; (GenBank) imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D RN607_08320 hisB; (GenBank) imidazoleglycerol-phosphate dehydratase HisB K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_10875 inositol monophosphatase family protein K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D RN607_08340 hisD; (GenBank) histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D RN607_10215 hutH; (GenBank) histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D RN607_10220 hutU; (GenBank) urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D RN607_10235 hutI; (GenBank) imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
C 00350 Tyrosine metabolism [PATH:dcp00350]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_11940 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RN607_01890 Gfo/Idh/MocA family oxidoreductase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D RN607_14195 aldolase/citrate lyase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D RN607_03635 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03640 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:dcp00360]
D RN607_11940 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_01355 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_10130 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13920 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_02555 NAD(P)/FAD-dependent oxidoreductase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
D RN607_02565 FAD-dependent oxidoreductase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
D RN607_02575 FAD-dependent oxidoreductase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
D RN607_07860 non-heme iron oxygenase ferredoxin subunit K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
C 00380 Tryptophan metabolism [PATH:dcp00380]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_01355 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_10130 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13920 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_14230 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dcp00400]
D RN607_06140 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RN607_06635 aroB; (GenBank) 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D RN607_06640 type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D RN607_06630 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D RN607_10865 aroA; (GenBank) 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D RN607_06625 aroC; (GenBank) chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D RN607_07580 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RN607_06105 trpD; (GenBank) anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D RN607_08300 priA; (GenBank) bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase/phosphoribosylanthranilate isomerase PriA K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D RN607_07560 trpC; (GenBank) indole-3-glycerol phosphate synthase TrpC K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D RN607_07550 trpA; (GenBank) tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D RN607_07555 trpB; (GenBank) tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D RN607_07340 aroH; (GenBank) chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D RN607_07335 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RN607_00390 pheA; (GenBank) prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:dcp00410]
D RN607_02190 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D RN607_07105 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_02095 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D RN607_02185 panC; (GenBank) pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RN607_12755 hydA; (GenBank) dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RN607_12760 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
D RN607_10225 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RN607_02085 CoA-acylating methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:dcp00430]
D RN607_07105 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RN607_14020 ald; (GenBank) alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D RN607_02095 aspartate aminotransferase family protein K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D RN607_11475 pta; (GenBank) phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RN607_11480 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:dcp00450]
D RN607_00325 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RN607_00250 metE; (GenBank) 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RN607_09165 cobalamin-independent methionine synthase II family protein K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D RN607_07850 SufS family cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D RN607_10000 molybdopterin-dependent oxidoreductase K12528 xdhD; putative selenate reductase molybdopterin-binding subunit
D RN607_13340 cysN; (GenBank) sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RN607_13335 cysD; (GenBank) sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RN607_02695 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:dcp00460]
D RN607_00485 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01490 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03455 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03460 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_04710 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_14160 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01425 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10405 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10505 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:dcp00470]
D RN607_11635 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RN607_04430 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_14070 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_01065 amino acid racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D RN607_01025 purQ; (GenBank) phosphoribosylformylglycinamidine synthase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D RN607_03780 murI; (GenBank) glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RN607_08435 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RN607_08550 dapF; (GenBank) diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RN607_10700 lysA; (GenBank) diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:dcp00480]
D RN607_06000 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RN607_04110 pepN; (GenBank) aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RN607_04120 pepN; (GenBank) aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RN607_11365 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RN607_06290 gndA; (GenBank) NADP-dependent phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RN607_08075 gnd; (GenBank) decarboxylating 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D RN607_07385 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_08070 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_06995 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:dcp00520]
D RN607_02735 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RN607_04415 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RN607_12185 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RN607_12360 glycosyl hydrolase family 18 protein K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D RN607_10400 pgmB; (GenBank) beta-phosphoglucomutase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_11335 nagZ; (GenBank) beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_11605 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_11320 amidohydrolase family protein K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D RN607_11665 glmM; (GenBank) phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D RN607_11325 nagB; (GenBank) glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D RN607_11645 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RN607_03000 carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D RN607_07380 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_10060 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_02380 manA; (GenBank) mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D RN607_00110 alpha-L-arabinofuranosidase C-terminal domain-containing protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D RN607_12870 alpha-L-arabinofuranosidase C-terminal domain-containing protein K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D RN607_12945 alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D RN607_10390 family 43 glycosylhydrolase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D RN607_12905 family 43 glycosylhydrolase K01198 xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_05775 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_13360 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RN607_02385 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RN607_01440 galK; (GenBank) galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_11290 galactokinase family protein K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_01435 galE; (GenBank) UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RN607_13405 glf; (GenBank) UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D RN607_03360 phospho-sugar mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RN607_10995 phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RN607_03275 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RN607_07775 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D RN607_02040 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
C 00541 Biosynthesis of various nucleotide sugars [PATH:dcp00541]
D RN607_02735 glmU; (GenBank) bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D RN607_13360 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D RN607_02385 UDP-glucose/GDP-mannose dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RN607_02040 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RN607_02045 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RN607_02050 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D RN607_03275 sugar phosphate nucleotidyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D RN607_02055 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D RN607_02060 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:dcp00515]
D RN607_02680 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:dcp00514]
D RN607_02680 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:dcp00511]
D RN607_01255 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_08195 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13870 glycoside hydrolase family 2 TIM barrel-domain containing protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D RN607_13710 glycoside hydrolase family 30 beta sandwich domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:dcp00542]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00550 Peptidoglycan biosynthesis [PATH:dcp00550]
D RN607_04415 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RN607_12185 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RN607_08420 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RN607_08435 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RN607_08450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RN607_04430 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_14070 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_08445 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RN607_05135 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RN607_07660 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RN607_08440 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RN607_08425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RN607_08430 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_14490 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_08455 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RN607_14485 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RN607_02125 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:dcp00552]
D RN607_07660 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium [PATH:dcp00572]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RN607_13400 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 00543 Exopolysaccharide biosynthesis [PATH:dcp00543]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RN607_09600 epsC; (GenBank) serine O-acetyltransferase EpsC K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:dcp00730]
D RN607_06050 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10320 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_06275 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RN607_04455 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D RN607_10870 rsgA; (GenBank) ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RN607_11740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RN607_11900 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RN607_11925 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:dcp00740]
D RN607_05835 ribA; (GenBank) GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RN607_06745 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RN607_06735 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RN607_00825 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D RN607_06750 ribH; (GenBank) 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D RN607_06740 riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D RN607_08700 bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D RN607_04670 NAD(P)H-dependent oxidoreductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
C 00750 Vitamin B6 metabolism [PATH:dcp00750]
D RN607_02375 serC; (GenBank) phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RN607_10670 thrC; (GenBank) threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D RN607_06440 pdxS; (GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D RN607_06450 pdxT; (GenBank) pyridoxal 5'-phosphate synthase glutaminase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:dcp00760]
D RN607_02195 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D RN607_06035 nadA; (GenBank) quinolinate synthase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D RN607_02210 nadC; (GenBank) carboxylating nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D RN607_03365 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RN607_10080 deoD; (GenBank) purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D RN607_09335 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D RN607_04595 nadD; (GenBank) nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D RN607_11190 nudC; (GenBank) NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RN607_05805 NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D RN607_08590 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D RN607_01515 Sir2 family NAD-dependent protein deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D RN607_07915 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RN607_03970 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RN607_03965 pntB; (GenBank) Re/Si-specific NAD(P)(+) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D RN607_03635 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D RN607_03640 NAD-dependent succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:dcp00770]
D RN607_09825 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D RN607_09820 ilvN; (GenBank) acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D RN607_09815 ilvC; (GenBank) ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D RN607_09845 ilvD; (GenBank) dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D RN607_05795 panB; (GenBank) 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D RN607_05575 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D RN607_05905 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D RN607_02185 panC; (GenBank) pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D RN607_11650 coaA; (GenBank) type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D RN607_06705 coaBC; (GenBank) bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D RN607_04490 coaD; (GenBank) pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D RN607_07465 coaE; (GenBank) dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RN607_11640 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RN607_06390 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09630 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09805 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_12755 hydA; (GenBank) dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RN607_12760 nitrilase-related carbon-nitrogen hydrolase K01431 UPB1; beta-ureidopropionase [EC:3.5.1.6]
D RN607_10225 allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D RN607_02190 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:dcp00780]
D RN607_05335 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RN607_05610 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_07015 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_03450 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:dcp00785]
D RN607_05965 lipB; (GenBank) lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RN607_05960 lipA; (GenBank) lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RN607_04245 biotin/lipoate A/B protein ligase family protein K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_05365 aceE; (GenBank) pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D RN607_05985 sucB; (GenBank) 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RN607_10835 multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D RN607_13380 pdhA; (GenBank) pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D RN607_13375 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D RN607_13370 dihydrolipoamide acetyltransferase family protein K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D RN607_00210 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RN607_00220 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RN607_00225 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:dcp00790]
D RN607_02150 folE; (GenBank) GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RN607_02160 folK; (GenBank) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D RN607_02155 folP; (GenBank) dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D RN607_08625 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RN607_09045 folylpolyglutamate synthase/dihydrofolate synthase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RN607_09055 Mur ligase family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RN607_05835 ribA; (GenBank) GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RN607_06745 ribB; (GenBank) 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D RN607_14435 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D RN607_06385 chorismate-binding protein K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D RN607_09060 aminotransferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D RN607_04855 moaA; (GenBank) GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RN607_04825 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D RN607_04860 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RN607_02595 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D RN607_04820 molybdopterin molybdotransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:dcp00670]
D RN607_08625 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RN607_11300 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RN607_11385 purN; (GenBank) phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D RN607_11380 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RN607_00220 gcvT; (GenBank) glycine cleavage system aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D RN607_08620 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D RN607_11315 purU; (GenBank) formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D RN607_00240 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RN607_01940 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D RN607_06710 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RN607_02795 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RN607_00210 gcvP; (GenBank) aminomethyl-transferring glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_00225 gcvH; (GenBank) glycine cleavage system protein GcvH K02437 gcvH; glycine cleavage system H protein
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:dcp00860]
D RN607_04325 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RN607_02960 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D RN607_03610 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_04770 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_06905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_04765 hemB; (GenBank) porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RN607_04755 hemC; (GenBank) hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RN607_04805 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D RN607_02965 hemE; (GenBank) uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RN607_06825 flavodoxin domain-containing protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D RN607_02970 FAD-dependent oxidoreductase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D RN607_02980 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D RN607_04800 cobA; (GenBank) uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D RN607_07370 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RN607_07880 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RN607_05405 histidine phosphatase family protein K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dcp00130]
D RN607_12495 isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2]
D RN607_12505 menD; (GenBank) 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D RN607_07965 menC; (GenBank) o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D RN607_12510 o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D RN607_12525 AMP-binding protein K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D RN607_12515 1,4-dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D RN607_12530 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RN607_08185 NAD(P)H-binding protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RN607_10695 SDR family oxidoreductase K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RN607_01900 tocopherol cyclase family protein K09834 VTE1; tocopherol cyclase [EC:5.5.1.24]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:dcp00900]
D RN607_06275 dxs; (GenBank) 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D RN607_08765 dxr; (GenBank) 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D RN607_02285 ispD; (GenBank) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D RN607_02715 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D RN607_02290 ispF; (GenBank) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D RN607_08755 ispG; (GenBank) flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D RN607_03020 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_14470 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RN607_06160 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RN607_02925 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RN607_05135 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:dcp00906]
D RN607_02570 lycopene cyclase family protein K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D RN607_00810 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_00815 transketolase C-terminal domain-containing protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D RN607_07375 tkt; (GenBank) transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:dcp00523]
D RN607_02040 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RN607_02045 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RN607_02050 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D RN607_12495 isochorismate synthase K01851 pchA; salicylate biosynthesis isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D RN607_02045 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:dcp00946]
D RN607_00485 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01490 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03455 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03460 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_04710 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_14160 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01425 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10405 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10505 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_01375 family 78 glycoside hydrolase catalytic domain K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D RN607_10435 family 78 glycoside hydrolase catalytic domain K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D RN607_10770 family 78 glycoside hydrolase catalytic domain K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
D RN607_05900 NAD(P)H-dependent oxidoreductase K26176 flr; flavone/flavonol reductase
D RN607_10520 FAD-dependent oxidoreductase K26178 fcr; flavanone/flavanol-cleaving reductase
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D RN607_01200 acetylxylan esterase K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
C 00332 Carbapenem biosynthesis [PATH:dcp00332]
D RN607_04565 proB; (GenBank) glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D RN607_04585 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:dcp00261]
D RN607_13340 cysN; (GenBank) sulfate adenylyltransferase subunit CysN K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
D RN607_13335 cysD; (GenBank) sulfate adenylyltransferase subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D RN607_12965 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RN607_12970 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RN607_08615 dapA; (GenBank) 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RN607_08655 dapB; (GenBank) 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:dcp00521]
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_00375 pgm; (GenBank) phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D RN607_13970 inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D RN607_06225 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RN607_02040 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RN607_02045 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D RN607_02050 rfbD; (GenBank) dTDP-4-dehydrorhamnose reductase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D RN607_06125 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_11330 ROK family protein K25026 glk; glucokinase [EC:2.7.1.2]
D RN607_13595 ROK family glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:dcp00525]
D RN607_02040 rfbA; (GenBank) glucose-1-phosphate thymidylyltransferase RfbA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D RN607_02045 rfbB; (GenBank) dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:dcp00401]
D RN607_07335 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D RN607_07580 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D RN607_05350 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RN607_05610 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_07015 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RN607_05340 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:dcp00999]
D RN607_06710 metK; (GenBank) methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RN607_00485 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01490 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03455 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_03460 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_04710 glycoside hydrolase family 3 N-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_14160 glycoside hydrolase family 3 C-terminal domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RN607_01425 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10405 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D RN607_10505 family 1 glycosylhydrolase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D RN607_06160 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:dcp00362]
D RN607_05530 VOC family protein K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RN607_03740 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RN607_05620 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RN607_05670 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D RN607_01890 Gfo/Idh/MocA family oxidoreductase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D RN607_01880 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D RN607_02430 PrpF domain-containing protein K16514 galD; 4-oxalomesaconate tautomerase [EC:5.3.2.8]
D RN607_02445 amidohydrolase family protein K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83]
D RN607_02425 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D RN607_01860 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D RN607_13725 FAD-dependent monooxygenase K19065 mobA; 3-hydroxybenzoate 4-monooxygenase [EC:1.14.13.23]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:dcp00627]
D RN607_01355 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_10130 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13920 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13745 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D RN607_01890 Gfo/Idh/MocA family oxidoreductase K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D RN607_01880 amidohydrolase family protein K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D RN607_01885 protocatechuate 4,5-dioxygenase subunit alpha/beta K04099 desB; gallate dioxygenase [EC:1.13.11.57]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:dcp00625]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D RN607_05530 VOC family protein K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RN607_03740 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00623 Toluene degradation [PATH:dcp00623]
D RN607_13745 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
C 00622 Xylene degradation [PATH:dcp00622]
D RN607_13745 aldehyde dehydrogenase family protein K00141 xylC; benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
D RN607_05530 VOC family protein K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RN607_03740 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00633 Nitrotoluene degradation [PATH:dcp00633]
D RN607_11885 alkene reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D RN607_07090 transketolase C-terminal domain-containing protein K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D RN607_07095 thiamine pyrophosphate-dependent enzyme K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D RN607_07085 2-oxoacid:acceptor oxidoreductase family protein K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:dcp00643]
D RN607_11940 aldehyde dehydrogenase family protein K00146 feaB; phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
D RN607_01355 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_10130 DUF3225 domain-containing protein K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_13920 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D RN607_05530 VOC family protein K00446 dmpB; catechol 2,3-dioxygenase [EC:1.13.11.2]
D RN607_03740 VOC family protein K07104 catE; catechol 2,3-dioxygenase [EC:1.13.11.2]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
D RN607_05070 DJ-1/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:dcp00626]
D RN607_11535 NAD(P)-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D RN607_03650 adhE; (GenBank) bifunctional acetaldehyde-CoA/alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D RN607_13725 FAD-dependent monooxygenase K19065 mobA; 3-hydroxybenzoate 4-monooxygenase [EC:1.14.13.23]
C 00365 Furfural degradation
C 00984 Steroid degradation
D RN607_07030 FAD-binding protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:dcp03020]
D RN607_12060 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RN607_12055 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RN607_11690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RN607_06700 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:dcp03010]
D RN607_04570 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_07955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_04575 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_04580 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RN607_07945 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RN607_07470 rpsA; (GenBank) 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RN607_08800 rpsB; (GenBank) 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RN607_11815 rpsC; (GenBank) 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RN607_06545 rpsD; (GenBank) 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RN607_11760 rpsE; (GenBank) 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RN607_13950 rpsF; (GenBank) 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RN607_11875 rpsG; (GenBank) 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RN607_11775 rpsH; (GenBank) 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RN607_11670 rpsI; (GenBank) 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RN607_11850 rpsJ; (GenBank) 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RN607_11695 rpsK; (GenBank) 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RN607_11880 rpsL; (GenBank) 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RN607_11700 rpsM; (GenBank) 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RN607_11780 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RN607_08695 rpsO; (GenBank) 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RN607_08885 rpsP; (GenBank) 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RN607_11800 rpsQ; (GenBank) 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RN607_13940 rpsR; (GenBank) 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RN607_11825 rpsS; (GenBank) 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RN607_04940 rpsT; (GenBank) 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RN607_12075 rplA; (GenBank) 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RN607_11830 rplB; (GenBank) 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RN607_11845 rplC; (GenBank) 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RN607_11840 rplD; (GenBank) 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RN607_11785 rplE; (GenBank) 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RN607_11770 rplF; (GenBank) 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RN607_13935 rplI; (GenBank) 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RN607_12070 rplJ; (GenBank) 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RN607_12080 rplK; (GenBank) 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RN607_12065 rplL; (GenBank) 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RN607_11675 rplM; (GenBank) 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RN607_11795 rplN; (GenBank) 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RN607_11750 rplO; (GenBank) 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RN607_11810 rplP; (GenBank) 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RN607_11685 rplQ; (GenBank) 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RN607_11765 rplR; (GenBank) 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RN607_08860 rplS; (GenBank) 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RN607_08255 rplT; (GenBank) 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RN607_04550 rplU; (GenBank) 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RN607_11820 rplV; (GenBank) 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RN607_11835 rplW; (GenBank) 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RN607_11790 rplX; (GenBank) 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RN607_02750 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RN607_04555 rpmA; (GenBank) 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RN607_04465 rpmB; (GenBank) 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RN607_11805 rpmC; (GenBank) 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RN607_11755 rpmD; (GenBank) 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RN607_10600 rpmE; (GenBank) 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RN607_04500 rpmF; (GenBank) 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RN607_12220 rpmG; (GenBank) 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RN607_14110 rpmH; (GenBank) 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RN607_08260 rpmI; (GenBank) 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RN607_11705 rpmJ; (GenBank) 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:dcp00970]
D RN607_02625 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_04620 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_14250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_00495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_02460 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_04005 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_10750 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_05290 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RN607_01410 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RN607_06375 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RN607_02730 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RN607_04335 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RN607_01415 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RN607_04350 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RN607_06380 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_09565 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_13265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_03910 tRNA-His K14226 tRNA-His; tRNA His
D RN607_14245 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RN607_00090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_02855 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_03810 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_07520 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_07690 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_01535 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RN607_03830 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RN607_05285 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RN607_11155 tRNA-Met K14230 tRNA-Met; tRNA Met
D RN607_12225 tRNA-Met K14230 tRNA-Met; tRNA Met
D RN607_01405 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RN607_07280 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_09560 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_12980 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_00445 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_00450 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_12860 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_12920 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_01810 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_02330 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_12230 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_12095 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RN607_12280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RN607_05380 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_06370 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_06395 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_04325 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RN607_09935 gatA; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RN607_11970 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RN607_09930 gatB; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RN607_09940 gatC; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RN607_06550 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RN607_06515 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RN607_05165 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RN607_06415 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RN607_00400 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RN607_02295 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RN607_02695 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RN607_06720 fmt; (GenBank) methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RN607_09440 valS; (GenBank) valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RN607_04910 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RN607_09080 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RN607_02215 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RN607_10705 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RN607_08745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RN607_06510 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RN607_08225 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RN607_08220 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RN607_07960 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RN607_03245 trpS; (GenBank) tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes [PATH:dcp03008]
D RN607_04505 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RN607_03915 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:dcp03060]
D RN607_11745 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RN607_12090 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RN607_07405 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RN607_06480 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RN607_06485 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RN607_14095 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RN607_10915 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RN607_08925 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RN607_12950 ffs; (GenBank) signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
D RN607_08945 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RN607_06775 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RN607_03240 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RN607_06780 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D RN607_08855 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RN607_08380 lspA; (GenBank) signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum [PATH:dcp04141]
D RN607_13160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_10150 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:dcp04122]
D RN607_06050 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10320 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_09070 sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D RN607_10200 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RN607_04860 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D RN607_04855 moaA; (GenBank) GTP 3',8-cyclase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D RN607_04840 MoaD/ThiS family protein K03636 moaD; sulfur-carrier protein
D RN607_04815 HesA/MoeB/ThiF family protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D RN607_04825 moaC; (GenBank) cyclic pyranopterin monophosphate synthase MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
C 03050 Proteasome
D RN607_07625 arc; (GenBank) proteasome ATPase K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:dcp03018]
D RN607_04545 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RN607_08690 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RN607_07060 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RN607_08335 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RN607_10610 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RN607_08565 rny; (GenBank) ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D RN607_08610 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RN607_12800 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RN607_02350 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RN607_01585 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RN607_14030 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:dcp03030]
D RN607_06110 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09285 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_11570 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_08350 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RN607_12955 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RN607_01800 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RN607_04935 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RN607_14120 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RN607_13930 dnaB; (GenBank) replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RN607_05260 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_04265 rnhA; (GenBank) ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RN607_05405 histidine phosphatase family protein K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D RN607_08850 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:dcp03410]
D RN607_13015 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RN607_02335 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RN607_13090 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RN607_04510 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RN607_07715 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RN607_00235 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RN607_09310 uracil-DNA glycosylase family protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D RN607_00850 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RN607_11295 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:dcp03420]
D RN607_02810 mfd; (GenBank) transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RN607_07445 uvrA; (GenBank) excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RN607_07460 uvrB; (GenBank) excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RN607_07440 uvrC; (GenBank) excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RN607_09350 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11185 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11200 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11415 pcrA; (GenBank) DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:dcp03430]
D RN607_09350 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11185 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11200 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11415 pcrA; (GenBank) DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_03015 xseA; (GenBank) exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RN607_03005 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08350 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RN607_14120 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RN607_12955 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RN607_04935 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RN607_01800 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RN607_06110 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09285 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_11570 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:dcp03440]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_14125 recF; (GenBank) DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RN607_05100 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RN607_12960 recR; (GenBank) recombination mediator RecR K06187 recR; recombination protein RecR
D RN607_08575 recA; (GenBank) recombinase RecA K03553 recA; recombination protein RecA
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_06470 ruvA; (GenBank) Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RN607_06475 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RN607_06465 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RN607_04475 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RN607_08350 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RN607_14120 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RN607_12955 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RN607_04935 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RN607_01800 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RN607_06110 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09285 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_11570 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_06715 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:dcp03250]
D RN607_14410 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus and Alphavirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03273 Virion - Lassa virus and SFTS virus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:dcp02010]
D RN607_05595 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RN607_05600 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D RN607_04880 modA; (GenBank) molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RN607_04875 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RN607_04870 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RN607_12710 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RN607_12715 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RN607_12720 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RN607_12265 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RN607_12250 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D RN607_12255 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D RN607_12260 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RN607_04045 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RN607_04050 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein
D RN607_04055 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RN607_03885 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RN607_03890 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RN607_03895 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D RN607_02310 ugpC; (GenBank) sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_01190 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_10785 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_12895 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_01185 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_10780 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_12890 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_01180 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_10775 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_12885 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_13885 carbohydrate ABC transporter substrate-binding protein K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D RN607_13880 sugar ABC transporter permease K10189 lacF; lactose/L-arabinose transport system permease protein
D RN607_13875 carbohydrate ABC transporter permease K10190 lacG; lactose/L-arabinose transport system permease protein
D RN607_01295 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RN607_01300 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RN607_01305 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RN607_03595 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D RN607_10190 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D RN607_10185 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D RN607_10180 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D RN607_11350 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D RN607_11345 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein
D RN607_11340 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein
D RN607_01130 chvE; (GenBank) sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RN607_01460 chvE; (GenBank) sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RN607_01125 gguB; (GenBank) sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RN607_01470 gguB; (GenBank) sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RN607_01120 gguA; (GenBank) sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_01465 gguA; (GenBank) sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_03280 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RN607_04065 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RN607_03290 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RN607_04075 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RN607_03295 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RN607_04080 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RN607_03285 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RN607_04070 ATP-binding cassette domain-containing protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RN607_07150 ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D RN607_07155 sugar ABC transporter permease K17316 gtsB; glucose/mannose transport system permease protein
D RN607_07160 carbohydrate ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein
D RN607_05895 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RN607_05890 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RN607_13625 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RN607_13630 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RN607_01110 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D RN607_02255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RN607_02260 pstC; (GenBank) phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RN607_02265 pstA; (GenBank) phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RN607_02270 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RN607_05110 phnD; (GenBank) phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RN607_05265 phnD; (GenBank) phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RN607_05120 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05125 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05275 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05280 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05115 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RN607_05270 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RN607_07510 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13770 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13755 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RN607_07495 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RN607_07500 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_13765 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_07505 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_13760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_07490 branched-chain amino acid ABC transporter permease K11956 natD; neutral amino acid transport system permease protein
D RN607_03725 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RN607_03720 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RN607_03715 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RN607_03030 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RN607_03035 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RN607_03040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RN607_03045 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RN607_02955 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D RN607_02950 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein
D RN607_02945 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RN607_05160 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D RN607_05150 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D RN607_05155 ATP-binding cassette domain-containing protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RN607_09185 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein
D RN607_07815 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RN607_07825 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein
D RN607_07820 ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D RN607_13395 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RN607_03665 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RN607_03660 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RN607_07595 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_10635 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_10630 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_04525 cydC; (GenBank) thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D RN607_04530 ABC transporter transmembrane domain-containing protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D RN607_11515 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:dcp02060]
D RN607_02860 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RN607_06335 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RN607_02865 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_03445 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_06340 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_01380 glucose PTS transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_06345 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_10525 PTS transporter subunit EIIC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_13695 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_03430 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RN607_03420 mtlA; (GenBank) mannitol-specific PTS transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D RN607_02870 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RN607_02875 pfkB; (GenBank) 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:dcp03070]
D RN607_06480 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RN607_06485 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RN607_12090 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RN607_07405 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RN607_11745 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RN607_14095 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RN607_10915 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RN607_08945 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RN607_08925 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RN607_06775 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RN607_03240 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RN607_06780 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:dcp02020]
D RN607_02245 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RN607_02250 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RN607_02255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RN607_14535 flagellin K02406 fliC; flagellin
D RN607_08810 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14530 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14615 flagellar motor protein K02556 motA; chemotaxis protein MotA
D RN607_07880 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RN607_03235 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RN607_10935 mtrB; (GenBank) MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RN607_10940 mtrA; (GenBank) MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RN607_14115 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RN607_00020 csrA; (GenBank) carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RN607_04520 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RN607_04515 response regulator transcription factor K07695 devR; two-component system, NarL family, response regulator DevR
D RN607_03570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RN607_01680 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RN607_03510 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RN607_01685 hypothetical protein K12510 tadB; tight adherence protein B
D RN607_03515 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RN607_03520 type II secretion system F family protein K12511 tadC; tight adherence protein C
D RN607_08930 HD domain-containing protein K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D RN607_08935 P-II family nitrogen regulator K04751 glnB; nitrogen regulatory protein P-II 1
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_00255 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_06585 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_00055 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RN607_00080 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00085 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00200 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_04015 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_05550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_07645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_11530 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_12910 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00045 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RN607_00040 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RN607_00060 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00050 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RN607_13005 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RN607_04540 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RN607_04535 cydB; (GenBank) cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RN607_10685 hypothetical protein K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D RN607_01275 glycoside hydrolase family 6 protein K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04082 Neuroactive ligand signaling
C 04081 Hormone signaling
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
D RN607_13710 glycoside hydrolase family 30 beta sandwich domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 04146 Peroxisome [PATH:dcp04146]
D RN607_07000 acyl-CoA dehydrogenase K00232 E1.3.3.6; acyl-CoA oxidase [EC:1.3.3.6]
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_11190 nudC; (GenBank) NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D RN607_11365 NADP-dependent isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RN607_14230 catalase K03781 katE; catalase [EC:1.11.1.6]
D RN607_06075 superoxide dismutase K04564 SOD2; superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:dcp02024]
D RN607_02800 S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D RN607_07580 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D RN607_06140 3-deoxy-7-phosphoheptulonate synthase class II K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D RN607_07105 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D RN607_07510 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13770 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13755 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RN607_07495 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RN607_07500 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_13765 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_07505 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_13760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_13005 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RN607_05835 ribA; (GenBank) GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D RN607_06735 ribD; (GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D RN607_03030 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RN607_03035 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RN607_03040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RN607_03045 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RN607_00465 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_01600 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_08980 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_10425 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_00470 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_01605 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_08975 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_10420 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_00475 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_01610 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RN607_08970 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RN607_10415 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_01615 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_08965 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_14095 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RN607_12090 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RN607_07405 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RN607_11745 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RN607_10915 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RN607_08945 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RN607_08925 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:dcp02030]
D RN607_00080 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00085 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00200 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_04015 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_05550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_07645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_11530 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_12910 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_05895 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RN607_00040 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RN607_00045 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RN607_00060 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00065 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D RN607_00050 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RN607_00055 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RN607_14575 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RN607_14630 FliM/FliN family flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D RN607_14635 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RN607_14615 flagellar motor protein K02556 motA; chemotaxis protein MotA
D RN607_14620 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:dcp02040]
D RN607_14565 fliE; (GenBank) flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RN607_14570 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RN607_14575 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RN607_14580 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D RN607_14585 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RN607_14590 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D RN607_14595 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D RN607_14625 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D RN607_14630 FliM/FliN family flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D RN607_14635 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RN607_14640 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RN607_14645 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RN607_14650 fliQ; (GenBank) flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RN607_14655 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RN607_00005 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RN607_14660 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RN607_14555 flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D RN607_14560 flgC; (GenBank) flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RN607_14600 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D RN607_14605 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D RN607_14520 flgK; (GenBank) flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RN607_14515 flgL; (GenBank) flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D RN607_14535 flagellin K02406 fliC; flagellin
D RN607_14540 fliD; (GenBank) flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D RN607_14545 fliS; (GenBank) flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D RN607_14615 flagellar motor protein K02556 motA; chemotaxis protein MotA
D RN607_14620 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RN607_06170 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RN607_08810 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14530 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04981 Folate transport and metabolism [PATH:dcp04981]
D RN607_08625 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D RN607_11305 glyA; (GenBank) serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RN607_08620 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
C 04382 Cornified envelope formation [PATH:dcp04382]
D RN607_13710 glycoside hydrolase family 30 beta sandwich domain-containing protein K01201 GBA; glucosylceramidase [EC:3.2.1.45]
D RN607_10215 hutH; (GenBank) histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:dcp01501]
D RN607_10400 pgmB; (GenBank) beta-phosphoglucomutase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_11335 nagZ; (GenBank) beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_11605 glycoside hydrolase family 3 N-terminal domain-containing protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D RN607_03030 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RN607_03035 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RN607_03040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RN607_03045 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RN607_08455 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:dcp01502]
D RN607_04430 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_14070 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_11635 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RN607_08445 murF; (GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RN607_08440 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RN607_08425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D RN607_14410 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:dcp01000]
C 01001 Protein kinases [BR:dcp01001]
D RN607_06145 pknB; (GenBank) Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RN607_14475 pknB; (GenBank) Stk1 family PASTA domain-containing Ser/Thr kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RN607_14480 serine/threonine-protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D RN607_09280 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RN607_14315 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RN607_05220 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RN607_02245 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RN607_10935 mtrB; (GenBank) MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RN607_10340 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_11115 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_13200 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_04520 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RN607_00040 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RN607_11080 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:dcp01009]
D RN607_02795 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_12040 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RN607_14495 protein phosphatase 2C domain-containing protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D RN607_07780 serB; (GenBank) phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:dcp01002]
D RN607_08380 lspA; (GenBank) signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RN607_06605 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RN607_09205 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D RN607_11450 guaA; (GenBank) glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_11495 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_11550 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D RN607_02115 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RN607_01315 purF; (GenBank) amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D RN607_07540 gltB; (GenBank) glutamate synthase large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D RN607_11645 glmS; (GenBank) glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D RN607_05070 DJ-1/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103]
D RN607_04110 pepN; (GenBank) aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RN607_04120 pepN; (GenBank) aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D RN607_07170 immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-]
D RN607_04200 M13-type metalloendopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RN607_06000 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RN607_07975 M20 family metallopeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D RN607_03205 dapE; (GenBank) succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RN607_01735 M20/M25/M40 family metallo-hydrolase K13049 PM20D1; carboxypeptidase PM20D1 [EC:3.4.17.-]
D RN607_10120 allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D RN607_01630 map; (GenBank) type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RN607_05780 map; (GenBank) type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RN607_11735 map; (GenBank) type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RN607_11235 aminopeptidase P family protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RN607_02145 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RN607_12325 htpX; (GenBank) zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D RN607_01090 PrsW family intramembrane metalloprotease K24131 prsW; protease PrsW [EC:3.4.-.-]
D RN607_03235 trypsin-like peptidase domain-containing protein K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D RN607_02125 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RN607_09455 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RN607_09460 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RN607_11165 PDZ domain-containing protein K07177 K07177; Lon-like protease
D RN607_08530 lexA; (GenBank) transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RN607_08855 lepB; (GenBank) signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RN607_00670 HK97 family phage prohead protease K06904 GP4; Escherichia/Staphylococcus phage prohead protease
C 01003 Glycosyltransferases [BR:dcp01003]
D RN607_06800 polyprenol monophosphomannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D RN607_02680 phospholipid carrier-dependent glycosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D RN607_06435 glycosyltransferase family 4 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D RN607_12605 glycosyltransferase family 4 protein K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D RN607_04730 glycosyltransferase K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D RN607_04735 glycosyltransferase family 1 protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D RN607_07770 glgA; (GenBank) glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D RN607_08430 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_14490 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D RN607_13400 glycosyltransferase K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:dcp01005]
D RN607_10580 MraY family glycosyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:dcp01011]
D RN607_04415 murA; (GenBank) UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RN607_12185 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RN607_08420 murC; (GenBank) UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RN607_08435 murD; (GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RN607_08450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RN607_04430 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_14070 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RN607_11635 alr; (GenBank) alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RN607_03780 murI; (GenBank) glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D RN607_08440 mraY; (GenBank) phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RN607_08425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RN607_07660 undecaprenyl-diphosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D RN607_14045 lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RN607_08455 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RN607_14485 penicillin-binding protein 2 K05364 pbpA; penicillin-binding protein A
D RN607_02125 dacB; (GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D RN607_08430 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_14490 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D RN607_02115 C40 family peptidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D RN607_06560 mltG; (GenBank) endolytic transglycosylase MltG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:dcp01004]
D RN607_05350 ACP S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RN607_05345 beta-ketoacyl-ACP synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RN607_05335 fabF; (GenBank) beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RN607_05610 SDR family oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_07015 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RN607_04090 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D RN607_07795 fabI; (GenBank) enoyl-ACP reductase FabI K11611 inhA; meromycolic acid enoyl-[acyl-carrier protein] reductase [EC:1.3.1.118]
D RN607_01660 acs; (GenBank) acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06130 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RN607_07325 lysophospholipid acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:dcp01008]
C 01006 Prenyltransferases [BR:dcp01006]
D RN607_06160 polyprenyl synthetase family protein K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RN607_14470 polyprenyl synthetase family protein K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D RN607_02925 isoprenyl transferase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D RN607_05135 isoprenyl transferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RN607_08555 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RN607_12530 1,4-dihydroxy-2-naphthoate polyprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D RN607_07370 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:dcp01007]
D RN607_04325 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RN607_07960 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RN607_03245 trpS; (GenBank) tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RN607_02295 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RN607_10705 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RN607_02695 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RN607_09080 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RN607_09440 valS; (GenBank) valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RN607_04910 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RN607_02215 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RN607_06515 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RN607_06510 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RN607_05165 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RN607_00400 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RN607_08745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RN607_06415 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RN607_06550 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RN607_08225 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RN607_08220 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RN607_01350 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_12100 pyridoxal phosphate-dependent aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_14200 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RN607_07145 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D RN607_08325 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_13460 hisC; (GenBank) histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D RN607_00325 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D RN607_08010 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D RN607_03630 gabT; (GenBank) 4-aminobutyrate--2-oxoglutarate transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D RN607_06980 aspartate aminotransferase family protein K00596 E4.1.1.64; 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64]
D RN607_03610 aspartate aminotransferase family protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_04770 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_06905 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D RN607_06390 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09630 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_09805 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RN607_02375 serC; (GenBank) phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D RN607_10125 alanine--glyoxylate aminotransferase family protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:dcp00194]
D RN607_10535 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RN607_10540 atpD; (GenBank) F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RN607_10545 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RN607_10550 atpA; (GenBank) F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RN607_10555 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RN607_10560 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RN607_10565 atpE; (GenBank) ATP synthase F0 subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RN607_10570 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:dcp03000]
D RN607_07715 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RN607_08135 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D RN607_02880 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RN607_03440 DeoR/GlpR family DNA-binding transcription regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D RN607_05850 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RN607_10715 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RN607_10760 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RN607_12900 LacI family DNA-binding transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D RN607_08995 GntR family transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D RN607_12270 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D RN607_14165 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D RN607_13720 MarR family winged helix-turn-helix transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D RN607_12815 helix-turn-helix transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D RN607_05145 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D RN607_14225 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D RN607_05625 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D RN607_13005 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D RN607_09355 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D RN607_03135 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D RN607_08585 helix-turn-helix transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D RN607_09690 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D RN607_02390 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D RN607_04745 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D RN607_03450 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RN607_01650 helix-turn-helix transcriptional regulator K07727 K07727; putative transcriptional regulator
D RN607_06875 proline dehydrogenase family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D RN607_01385 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RN607_06350 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RN607_10510 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RN607_13690 PRD domain-containing protein K03488 licT; beta-glucoside operon transcriptional antiterminator
D RN607_00550 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RN607_05450 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RN607_11020 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RN607_11075 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RN607_11590 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D RN607_14075 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RN607_02280 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RN607_08000 argR; (GenBank) arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D RN607_04980 hrcA; (GenBank) heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D RN607_11900 hypothetical protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RN607_11925 TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D RN607_06660 pyrR; (GenBank) bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D RN607_08385 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D RN607_08520 nrdR; (GenBank) transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D RN607_08470 mraZ; (GenBank) division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:dcp03021]
D RN607_11690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RN607_12060 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RN607_12055 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RN607_06700 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RN607_06170 RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D RN607_03225 sigE; (GenBank) RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_04355 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_09130 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_09230 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_10855 sigma-70 family RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_13825 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D RN607_08810 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14530 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_08725 nusA; (GenBank) transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RN607_06655 nusB; (GenBank) transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RN607_12085 nusG; (GenBank) transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RN607_08385 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D RN607_02905 greA; (GenBank) transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RN607_10610 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:dcp03019]
D RN607_13160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase
D RN607_04545 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RN607_04505 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RN607_08610 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RN607_08565 rny; (GenBank) ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D RN607_03915 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RN607_07060 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RN607_08335 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RN607_08690 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RN607_10610 rho; (GenBank) transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RN607_12800 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RN607_02350 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RN607_01585 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D RN607_00020 csrA; (GenBank) carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D RN607_07435 rapZ; (GenBank) RNase adapter RapZ K06958 rapZ; RNase adapter protein RapZ
D RN607_06790 DEAD/DEAH box helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D RN607_08355 hrpA; (GenBank) ATP-dependent RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:dcp03011]
D RN607_07470 rpsA; (GenBank) 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RN607_08800 rpsB; (GenBank) 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RN607_11815 rpsC; (GenBank) 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RN607_06545 rpsD; (GenBank) 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RN607_11760 rpsE; (GenBank) 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RN607_13950 rpsF; (GenBank) 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RN607_11875 rpsG; (GenBank) 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RN607_11775 rpsH; (GenBank) 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RN607_11670 rpsI; (GenBank) 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RN607_11850 rpsJ; (GenBank) 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RN607_11695 rpsK; (GenBank) 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RN607_11880 rpsL; (GenBank) 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RN607_11700 rpsM; (GenBank) 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RN607_11780 type Z 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RN607_08695 rpsO; (GenBank) 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RN607_08885 rpsP; (GenBank) 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RN607_11800 rpsQ; (GenBank) 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RN607_13940 rpsR; (GenBank) 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RN607_11825 rpsS; (GenBank) 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RN607_04940 rpsT; (GenBank) 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RN607_12075 rplA; (GenBank) 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RN607_11830 rplB; (GenBank) 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RN607_11845 rplC; (GenBank) 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RN607_11840 rplD; (GenBank) 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RN607_11785 rplE; (GenBank) 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RN607_11770 rplF; (GenBank) 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RN607_13935 rplI; (GenBank) 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RN607_12070 rplJ; (GenBank) 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RN607_12080 rplK; (GenBank) 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RN607_12065 rplL; (GenBank) 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RN607_11675 rplM; (GenBank) 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RN607_11795 rplN; (GenBank) 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RN607_11750 rplO; (GenBank) 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RN607_11810 rplP; (GenBank) 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RN607_11685 rplQ; (GenBank) 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RN607_11765 rplR; (GenBank) 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RN607_08860 rplS; (GenBank) 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RN607_08255 rplT; (GenBank) 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RN607_04550 rplU; (GenBank) 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RN607_11820 rplV; (GenBank) 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RN607_11835 rplW; (GenBank) 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RN607_11790 rplX; (GenBank) 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RN607_04555 rpmA; (GenBank) 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RN607_04465 rpmB; (GenBank) 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RN607_11805 rpmC; (GenBank) 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RN607_11755 rpmD; (GenBank) 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RN607_10600 rpmE; (GenBank) 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RN607_04500 rpmF; (GenBank) 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RN607_12220 rpmG; (GenBank) 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RN607_14110 rpmH; (GenBank) 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RN607_08260 rpmI; (GenBank) 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RN607_11705 rpmJ; (GenBank) 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RN607_02750 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25
D RN607_04570 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_07955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_04575 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_04580 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RN607_07945 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 03009 Ribosome biogenesis [BR:dcp03009]
D RN607_04505 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RN607_03915 orn; (GenBank) oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RN607_13160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase
D RN607_05015 era; (GenBank) GTPase Era K03595 era; GTPase
D RN607_04560 obgE; (GenBank) GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D RN607_08385 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D RN607_08725 nusA; (GenBank) transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D RN607_06655 nusB; (GenBank) transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D RN607_12085 nusG; (GenBank) transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D RN607_02710 rsmA; (GenBank) 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RN607_06725 transcription antitermination factor NusB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D RN607_07215 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D RN607_04485 rsmD; (GenBank) 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RN607_04990 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RN607_14085 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RN607_08465 rsmH; (GenBank) 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RN607_02685 rsmI; (GenBank) 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RN607_07920 TlyA family RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RN607_02300 rlmB; (GenBank) 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RN607_08775 rlmN; (GenBank) 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D RN607_02900 rlmC; (GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D RN607_03095 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RN607_07345 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RN607_08375 RluA family pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RN607_11620 rimI; (GenBank) ribosomal protein S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D RN607_02600 GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D RN607_04460 GNAT family protein K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D RN607_08870 rimM; (GenBank) ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D RN607_04545 Rne/Rng family ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
D RN607_06555 ruvX; (GenBank) Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RN607_07060 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RN607_10870 rsgA; (GenBank) ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D RN607_07320 der; (GenBank) ribosome biogenesis GTPase Der K03977 engA; GTPase
D RN607_08540 hflX; (GenBank) GTPase HflX K03665 hflX; GTPase
D RN607_10585 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RN607_06490 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D RN607_08710 rbfA; (GenBank) 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A
D RN607_08730 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D RN607_01830 RNA-binding S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D RN607_04605 rsfS; (GenBank) ribosome silencing factor K09710 ybeB; ribosome-associated protein
D RN607_05005 ybeY; (GenBank) rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor
D RN607_03055 ychF; (GenBank) redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase
D RN607_04495 DUF177 domain-containing protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:dcp03016]
D RN607_14030 CCA tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D RN607_04325 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RN607_08745 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RN607_09080 ileS; (GenBank) isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RN607_04910 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RN607_02695 metG; (GenBank) methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RN607_10705 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RN607_02215 lysS; (GenBank) lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D RN607_06515 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RN607_06550 alaS; (GenBank) alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RN607_05165 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RN607_06415 thrS; (GenBank) threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RN607_00400 serS; (GenBank) serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RN607_02295 cysS; (GenBank) cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RN607_09440 valS; (GenBank) valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RN607_06510 hisS; (GenBank) histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RN607_08225 pheS; (GenBank) phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RN607_08220 pheT; (GenBank) phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RN607_07960 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RN607_03245 trpS; (GenBank) tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RN607_13065 dtd; (GenBank) D-aminoacyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D RN607_04995 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RN607_07630 tRNA (adenine-N1)-methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D RN607_11680 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RN607_08705 truB; (GenBank) tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RN607_06050 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10320 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10585 L-threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RN607_08555 miaA; (GenBank) tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RN607_13330 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RN607_14105 rnpA; (GenBank) ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RN607_05425 rnpB; (GenBank) RNase P RNA component class A K01978 rnpB; RNase P catalytic RNA component
D RN607_03790 rph; (GenBank) ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RN607_06280 HRDC domain-containing protein K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RN607_04035 ettA; (GenBank) energy-dependent translational throttle protein EttA K06020 ettA; energy-dependent translational throttle protein EttA
D RN607_04260 ybaK; (GenBank) Cys-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D RN607_12850 nucleoside deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RN607_08560 miaB; (GenBank) tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RN607_08865 trmD; (GenBank) tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RN607_04175 tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D RN607_08250 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D RN607_03095 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D RN607_10200 mnmA; (GenBank) tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RN607_13050 folate-binding protein K06980 ygfZ; tRNA-modifying protein YgfZ
D RN607_02130 tilS; (GenBank) tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RN607_11625 tsaB; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RN607_11610 tsaD; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RN607_11630 tsaE; (GenBank) tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RN607_08690 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:dcp03012]
D RN607_08715 infB; (GenBank) translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RN607_08265 infC; (GenBank) translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RN607_08795 tsf; (GenBank) translation elongation factor Ts K02357 tsf; elongation factor Ts
D RN607_11865 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D RN607_11870 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D RN607_10595 prfA; (GenBank) peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D RN607_08785 frr; (GenBank) ribosome recycling factor K02838 frr; ribosome recycling factor
D RN607_10590 prmC; (GenBank) peptide chain release factor N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RN607_13205 putative protein N(5)-glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RN607_02755 pth; (GenBank) aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RN607_11710 infA; (GenBank) translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RN607_06645 efp; (GenBank) elongation factor P K02356 efp; elongation factor P
D RN607_03655 prfB; (GenBank) peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:dcp03110]
D RN607_04345 AAA family ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RN607_13070 ATP-dependent Clp protease ATP-binding subunit K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D RN607_09450 clpX; (GenBank) ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_12800 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RN607_02350 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RN607_04985 dnaJ; (GenBank) molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RN607_12810 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RN607_12805 grpE; (GenBank) nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RN607_10150 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D RN607_00195 RNA-binding S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D RN607_11595 groES; (GenBank) co-chaperone GroES K04078 groES; chaperonin GroES
D RN607_02145 ftsH; (GenBank) ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RN607_10570 atpB; (GenBank) F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RN607_00300 copper chaperone PCu(A)C K09796 pccA; periplasmic copper chaperone A
D RN607_14410 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RN607_06505 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D RN607_03805 trxA; (GenBank) thioredoxin K03671 TXN; thioredoxin
D RN607_14060 trxA; (GenBank) thioredoxin K03671 TXN; thioredoxin
D RN607_10465 tetratricopeptide repeat protein K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:dcp04131]
D RN607_09025 ndk; (GenBank) nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RN607_13160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_07420 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RN607_02235 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D RN607_07530 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_07305 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:dcp04121]
D RN607_07615 ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:dcp03051]
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_07625 arc; (GenBank) proteasome ATPase K13527 mpa; proteasome-associated ATPase
D RN607_07610 pafA; (GenBank) Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D RN607_06765 WYL domain-containing protein K13572 pafB; proteasome accessory factor B
D RN607_06770 WYL domain-containing protein K13573 pafC; proteasome accessory factor C
D RN607_07620 dop; (GenBank) depupylase/deamidase Dop K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:dcp03032]
D RN607_04265 rnhA; (GenBank) ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RN607_14115 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RN607_13930 dnaB; (GenBank) replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RN607_05260 dnaG; (GenBank) DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08350 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RN607_14120 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RN607_04935 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RN607_01800 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RN607_06110 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09285 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_11570 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_12955 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RN607_05405 histidine phosphatase family protein K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D RN607_08850 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RN607_06205 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RN607_14140 gyrA; (GenBank) DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RN607_06190 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RN607_14135 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RN607_01760 topA; (GenBank) type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:dcp03036]
D RN607_04505 rnc; (GenBank) ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_02225 Lsr2 family protein K26249 lsr2; nucleoid-associated protein Lsr2
D RN607_14115 dnaA; (GenBank) chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RN607_09605 DNA starvation/stationary phase protection protein K04047 dps; starvation-inducible DNA-binding protein
D RN607_08135 LysR family transcriptional regulator ArgP K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator
D RN607_08960 smc; (GenBank) chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D RN607_07355 ScpA family protein K05896 scpA; segregation and condensation protein A
D RN607_07350 scpB; (GenBank) SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B
D RN607_03660 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RN607_08455 penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RN607_08605 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RN607_12160 FtsK/SpoIIIE domain-containing protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RN607_08415 cell division protein FtsQ/DivIB K03589 ftsQ; cell division protein FtsQ
D RN607_08430 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_14490 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_03665 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RN607_08410 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RN607_06300 zapE; (GenBank) cell division protein ZapE K06916 zapE; cell division protein ZapE
D RN607_08400 sepF; (GenBank) cell division protein SepF K09772 sepF; cell division inhibitor SepF
D RN607_07360 AAA family ATPase K03496 parA; chromosome partitioning protein
D RN607_14080 AAA family ATPase K03496 parA; chromosome partitioning protein
D RN607_14075 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RN607_14085 rsmG; (GenBank) 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RN607_08815 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D RN607_07365 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D RN607_11280 P-loop NTPase K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RN607_07425 whiA; (GenBank) DNA-binding protein WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:dcp03400]
D RN607_01335 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RN607_07710 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RN607_09870 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D RN607_02335 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D RN607_13090 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D RN607_13015 nth; (GenBank) endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RN607_00230 (deoxy)nucleoside triphosphate pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RN607_06235 dut; (GenBank) dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RN607_11855 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RN607_09310 uracil-DNA glycosylase family protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D RN607_07715 AlkA N-terminal domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D RN607_00235 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D RN607_04510 mutM; (GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D RN607_00850 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RN607_11295 exodeoxyribonuclease III K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RN607_09960 ligA; (GenBank) NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RN607_07480 polA; (GenBank) DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D RN607_07445 uvrA; (GenBank) excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D RN607_07460 uvrB; (GenBank) excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D RN607_07440 uvrC; (GenBank) excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D RN607_09350 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11185 ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11200 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_11415 pcrA; (GenBank) DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RN607_12060 rpoB; (GenBank) DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RN607_12055 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RN607_11690 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RN607_06700 rpoZ; (GenBank) DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RN607_02810 mfd; (GenBank) transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RN607_03015 xseA; (GenBank) exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RN607_03005 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RN607_08350 dnaE; (GenBank) DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RN607_14120 dnaN; (GenBank) DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RN607_04935 holA; (GenBank) DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RN607_01800 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RN607_06110 DEDD exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_09285 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_11570 exonuclease domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RN607_12955 DNA polymerase III subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08575 recA; (GenBank) recombinase RecA K03553 recA; recombination protein RecA
D RN607_06470 ruvA; (GenBank) Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RN607_06475 ruvB; (GenBank) Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RN607_06465 ruvC; (GenBank) crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RN607_06715 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RN607_09180 SMC family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50
D RN607_09175 exonuclease SbcCD subunit D C-terminal domain-containing protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RN607_13100 radA; (GenBank) DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RN607_14125 recF; (GenBank) DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RN607_04475 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RN607_05100 recO; (GenBank) DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D RN607_12960 recR; (GenBank) recombination mediator RecR K06187 recR; recombination protein RecR
D RN607_07910 recN; (GenBank) DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RN607_06205 DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RN607_14140 gyrA; (GenBank) DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RN607_06190 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RN607_14135 gyrB; (GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RN607_01760 topA; (GenBank) type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RN607_08335 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D RN607_07220 dinB; (GenBank) DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RN607_08530 lexA; (GenBank) transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D RN607_07725 DNA polymerase Y family protein K14161 imuB; protein ImuB
D RN607_07720 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RN607_08570 regulatory protein RecX K03565 recX; regulatory protein
D RN607_08535 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D RN607_01580 NUDIX domain-containing protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D RN607_07890 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D RN607_10020 nrdE; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RN607_10015 nrdF; (GenBank) class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:dcp03029]
D RN607_08715 infB; (GenBank) translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RN607_08265 infC; (GenBank) translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RN607_08795 tsf; (GenBank) translation elongation factor Ts K02357 tsf; elongation factor Ts
D RN607_11865 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D RN607_11870 fusA; (GenBank) elongation factor G K02355 fusA; elongation factor G
D RN607_05015 era; (GenBank) GTPase Era K03595 era; GTPase
D RN607_07960 tyrS; (GenBank) tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RN607_04910 leuS; (GenBank) leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RN607_06515 aspS; (GenBank) aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RN607_05165 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D RN607_10705 argS; (GenBank) arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RN607_09935 gatA; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RN607_11970 amidase family protein K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RN607_09930 gatB; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RN607_09940 gatC; (GenBank) Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RN607_04030 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_08160 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_13945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D RN607_12800 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RN607_12805 grpE; (GenBank) nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D RN607_02350 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RN607_11595 groES; (GenBank) co-chaperone GroES K04078 groES; chaperonin GroES
D RN607_04985 dnaJ; (GenBank) molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RN607_12810 DnaJ C-terminal domain-containing protein K03686 dnaJ; molecular chaperone DnaJ
D RN607_06050 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10320 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_11280 P-loop NTPase K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RN607_07370 heme o synthase K02257 COX10; heme o synthase [EC:2.5.1.141]
D RN607_07880 COX15/CtaA family protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D RN607_14095 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:dcp02000]
D RN607_07595 ABC transporter ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_10635 ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_10630 ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D RN607_04190 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RN607_07590 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RN607_04525 cydC; (GenBank) thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D RN607_04530 ABC transporter transmembrane domain-containing protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D RN607_11515 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D RN607_11510 ATP-binding cassette domain-containing protein K15738 uup; ABC transport system ATP-binding/permease protein
D RN607_04880 modA; (GenBank) molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D RN607_04875 ABC transporter permease K02018 modB; molybdate transport system permease protein
D RN607_04870 ATP-binding cassette domain-containing protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D RN607_05595 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D RN607_05600 ABC transporter permease subunit K15554 ssuC; sulfonate transport system permease protein
D RN607_12710 thiamine ABC transporter substrate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D RN607_12715 iron ABC transporter permease K02063 thiP; thiamine transport system permease protein
D RN607_12720 ABC transporter ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D RN607_12265 spermidine/putrescine ABC transporter substrate-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D RN607_12250 ABC transporter permease K11070 potC; spermidine/putrescine transport system permease protein
D RN607_12255 ABC transporter permease K11071 potB; spermidine/putrescine transport system permease protein
D RN607_12260 ABC transporter ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D RN607_04045 glycine betaine ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D RN607_04050 ABC transporter permease subunit K02001 proW; glycine betaine/proline transport system permease protein
D RN607_04055 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D RN607_03885 glycine betaine ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D RN607_03890 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D RN607_03895 ABC transporter permease subunit K05846 opuBD; osmoprotectant transport system permease protein
D RN607_02405 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RN607_11905 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RN607_12730 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D RN607_05590 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RN607_09980 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RN607_11895 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RN607_12735 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RN607_12745 ABC transporter permease subunit K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D RN607_02420 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RN607_05605 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RN607_09985 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RN607_11890 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RN607_12740 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D RN607_02310 ugpC; (GenBank) sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_05865 ABC transporter substrate-binding protein K25086 musE; maltose transport system substrate-binding protein
D RN607_05860 sugar ABC transporter permease K25087 musF; maltose transport system permease protein
D RN607_05855 carbohydrate ABC transporter permease K25088 musG; maltose transport system permease protein
D RN607_01190 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_10785 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_12895 extracellular solute-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D RN607_01185 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_10780 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_12890 sugar ABC transporter permease K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D RN607_01180 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_10775 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_12885 carbohydrate ABC transporter permease K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D RN607_01295 ABC transporter substrate-binding protein K10232 aglE; alpha-glucoside transport system substrate-binding protein
D RN607_01300 sugar ABC transporter permease K10233 aglF; alpha-glucoside transport system permease protein
D RN607_01305 carbohydrate ABC transporter permease K10234 aglG; alpha-glucoside transport system permease protein
D RN607_07150 ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D RN607_07155 sugar ABC transporter permease K17316 gtsB; glucose/mannose transport system permease protein
D RN607_07160 carbohydrate ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein
D RN607_03595 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D RN607_10190 ABC transporter substrate-binding protein K10240 cebE; cellobiose transport system substrate-binding protein
D RN607_10185 sugar ABC transporter permease K10241 cebF; cellobiose transport system permease protein
D RN607_10180 carbohydrate ABC transporter permease K10242 cebG; cellobiose transport system permease protein
D RN607_11350 extracellular solute-binding protein K17329 dasA; N,N'-diacetylchitobiose transport system substrate-binding protein
D RN607_11345 sugar ABC transporter permease K17330 dasB; N,N'-diacetylchitobiose transport system permease protein
D RN607_11340 carbohydrate ABC transporter permease K17331 dasC; N,N'-diacetylchitobiose transport system permease protein
D RN607_13885 carbohydrate ABC transporter substrate-binding protein K10188 lacE; lactose/L-arabinose transport system substrate-binding protein
D RN607_13880 sugar ABC transporter permease K10189 lacF; lactose/L-arabinose transport system permease protein
D RN607_13875 carbohydrate ABC transporter permease K10190 lacG; lactose/L-arabinose transport system permease protein
D RN607_01110 ATP-binding cassette domain-containing protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D RN607_01130 chvE; (GenBank) sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RN607_01460 chvE; (GenBank) sugar ABC transporter substrate-binding protein K10546 chvE; putative multiple sugar transport system substrate-binding protein
D RN607_01125 gguB; (GenBank) sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RN607_01470 gguB; (GenBank) sugar ABC transporter permease K10547 gguB; putative multiple sugar transport system permease protein
D RN607_01120 gguA; (GenBank) sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_01465 gguA; (GenBank) sugar ABC transporter ATP-binding protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_05895 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein
D RN607_05890 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RN607_13625 ABC transporter permease K10440 rbsC; ribose transport system permease protein
D RN607_13630 sugar ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D RN607_03280 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RN607_04065 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins
D RN607_03290 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RN607_04075 ABC transporter permease K23535 nupB; general nucleoside transport system permease protein
D RN607_03295 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RN607_04080 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein
D RN607_03285 ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RN607_04070 ATP-binding cassette domain-containing protein K23537 nupA; general nucleoside transport system ATP-binding protein
D RN607_11120 ABC transporter permease K02069 STAR2; UDP-glucose/iron transport system permease protein
D RN607_10265 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RN607_12930 extracellular solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D RN607_10260 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RN607_12935 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D RN607_10255 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RN607_12940 carbohydrate ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D RN607_05885 ATP-binding cassette domain-containing protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D RN607_02255 phosphate ABC transporter substrate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D RN607_02260 pstC; (GenBank) phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein
D RN607_02265 pstA; (GenBank) phosphate ABC transporter permease PstA K02038 pstA; phosphate transport system permease protein
D RN607_02270 pstB; (GenBank) phosphate ABC transporter ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D RN607_05110 phnD; (GenBank) phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RN607_05265 phnD; (GenBank) phosphate/phosphite/phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D RN607_05120 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05125 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05275 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05280 phnE; (GenBank) phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein
D RN607_05115 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RN607_05270 phnC; (GenBank) phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D RN607_07510 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13770 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D RN607_13755 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D RN607_07495 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D RN607_07500 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_13765 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D RN607_07505 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_13760 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D RN607_07490 branched-chain amino acid ABC transporter permease K11956 natD; neutral amino acid transport system permease protein
D RN607_03725 MetQ/NlpA family ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D RN607_03720 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D RN607_03715 ATP-binding cassette domain-containing protein K02071 metN; D-methionine transport system ATP-binding protein
D RN607_02780 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RN607_14215 transporter substrate-binding domain-containing protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RN607_02775 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D RN607_14210 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D RN607_02770 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RN607_14205 amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RN607_03030 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D RN607_03035 ABC transporter permease K15581 oppB; oligopeptide transport system permease protein
D RN607_03040 ABC transporter permease K15582 oppC; oligopeptide transport system permease protein
D RN607_03045 ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D RN607_00465 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_01600 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_08980 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_10425 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D RN607_00470 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_01605 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_08975 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_10420 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D RN607_00475 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_01610 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RN607_08970 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D RN607_10415 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_01615 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_08965 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D RN607_02955 iron ABC transporter permease K23186 fepD; iron-siderophore transport system permease protein
D RN607_02950 iron chelate uptake ABC transporter family permease subunit K23187 fepG; iron-siderophore transport system permease protein
D RN607_02945 ABC transporter ATP-binding protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D RN607_02940 ABC transporter substrate-binding protein K25109 sirA; iron-siderophore transport system substrate-binding protein
D RN607_12770 putative F420-0 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D RN607_12775 iron chelate uptake ABC transporter family permease subunit K02015 ABC.FEV.P; iron complex transport system permease protein
D RN607_07765 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RN607_12780 ABC transporter ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D RN607_05160 metal ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D RN607_05150 metal ABC transporter permease K09816 znuB; zinc transport system permease protein
D RN607_05155 ATP-binding cassette domain-containing protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RN607_09185 energy-coupling factor ABC transporter permease K02007 cbiM; cobalt/nickel transport system permease protein
D RN607_07815 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D RN607_07825 energy-coupling factor transporter transmembrane protein EcfT K16783 bioN; biotin transport system permease protein
D RN607_07820 ABC transporter ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D RN607_13395 ABC transporter permease K09690 wzm; homopolymeric O-antigen transport system permease protein
D RN607_01590 ABC transporter ATP-binding protein K25148 berA; beta-exotoxin I transport system ATP-binding protein
D RN607_00120 ABC transporter permease K25149 narB; polyether ionophore transport system permease protein
D RN607_00125 ABC transporter ATP-binding protein K25150 narA; polyether ionophore transport system ATP-binding protein
D RN607_03665 ftsX; (GenBank) permease-like cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D RN607_03660 ftsE; (GenBank) cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D RN607_01785 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_03760 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_03990 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_04000 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_09705 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_10830 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_11555 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_12110 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_13120 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D RN607_01780 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_03755 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_03925 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_03985 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_03995 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_09700 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_10825 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_11125 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_11560 ATP-binding cassette domain-containing protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_12105 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_13115 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_13390 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D RN607_00970 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RN607_08670 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D RN607_12180 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D RN607_00945 ATP-binding cassette domain-containing protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_00975 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_01225 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_08675 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_12175 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_12540 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D RN607_07855 sufC; (GenBank) Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D RN607_04450 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RN607_13680 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump
D RN607_05845 oligosaccharide MFS transporter K02532 lacY; MFS transporter, OHS family, lactose permease
D RN607_04125 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D RN607_04775 nitrate/nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D RN607_04635 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RN607_05935 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RN607_12840 multidrug effflux MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RN607_09155 MFS transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D RN607_04750 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RN607_06990 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RN607_09085 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RN607_09090 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D RN607_04660 MDR family MFS transporter K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D RN607_09485 MFS transporter K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D RN607_13655 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D RN607_07305 MFS transporter K06902 UMF1; MFS transporter, UMF1 family
D RN607_02860 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RN607_06335 ptsP; (GenBank) phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D RN607_02865 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_03445 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_06340 HPr family phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D RN607_01380 glucose PTS transporter subunit IIA K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_06345 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_10525 PTS transporter subunit EIIC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_13695 beta-glucoside-specific PTS transporter subunit IIABC K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D RN607_02870 fructose-specific PTS transporter subunit EIIC K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D RN607_03430 PTS sugar transporter subunit IIA K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D RN607_03420 mtlA; (GenBank) mannitol-specific PTS transporter subunit IIC K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D RN607_11370 aquaporin K06188 aqpZ; aquaporin Z
D RN607_05390 ion channel K10716 kch; voltage-gated potassium channel
D RN607_08940 ammonium transporter K03320 amt; ammonium transporter, Amt family
D RN607_03710 formate/nitrite transporter family protein K02598 nirC; nitrite transporter
D RN607_02720 mscL; (GenBank) large conductance mechanosensitive channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D RN607_04100 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D RN607_14615 flagellar motor protein K02556 motA; chemotaxis protein MotA
D RN607_14620 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RN607_01280 CrcB family protein K06199 crcB; fluoride exporter
D RN607_01285 CrcB family protein K06199 crcB; fluoride exporter
D RN607_05010 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_10815 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_10820 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_07830 basic amino acid/polyamine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D RN607_08095 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D RN607_06520 EamA family transporter K15268 eamA; O-acetylserine/cysteine efflux transporter
D RN607_06810 EamA family transporter K15269 pecM; probable blue pigment (indigoidine) exporter
D RN607_04270 EamA family transporter K03298 TC.DME; drug/metabolite transporter, DME family
D RN607_04285 EamA family transporter K11939 rhtA; inner membrane transporter RhtA
D RN607_12400 rarD; (GenBank) EamA family transporter RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D RN607_01495 BCCT family transporter K02168 betT; choline/glycine/proline betaine transport protein
D RN607_03750 calcium/sodium antiporter K07301 yrbG; cation:H+ antiporter
D RN607_13020 nhaA; (GenBank) Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D RN607_08100 sodium:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RN607_13715 cation:proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D RN607_09415 ybaL; (GenBank) YbaL family putative K(+) efflux transporter K26735 KEA4_5_6; K+:H+ antiporter
D RN607_00280 cation:proton antiporter regulatory subunit K07228 khtT; K+:H+ antiporter subunit KhtT
D RN607_00275 cation:proton antiporter K26732 khtU; K+:H+ antiporter subunit KhtU
D RN607_12655 potassium transporter TrkG K03498 trkH; trk/ktr system potassium uptake protein
D RN607_06250 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RN607_06255 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RN607_12660 TrkA family potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D RN607_12200 NCS2 family permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D RN607_14390 benzoate/H(+) symporter BenE family transporter K05782 benE; benzoate membrane transport protein
D RN607_01710 ion channel protein K03281 clcA; chloride channel protein, CIC family
D RN607_04180 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D RN607_04690 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RN607_14235 SulP family inorganic anion transporter K03321 TC.SULP; sulfate permease, SulP family
D RN607_08330 Nramp family divalent metal transporter K03322 mntH; manganese transport protein
D RN607_14045 lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D RN607_08130 LysE/ArgO family amino acid transporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D RN607_01555 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D RN607_08635 AzlC family ABC transporter permease K26605 azlC; branched chain amino acid efflux pump
D RN607_01550 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D RN607_08640 AzlD domain-containing protein K26606 azlD; branched chain amino acid efflux pump
D RN607_02895 AI-2E family transporter K20469 K20469; putative heme transporter
D RN607_04250 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D RN607_08430 putative peptidoglycan glycosyltransferase FtsW K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_14490 FtsW/RodA/SpoVE family cell cycle protein K03588 ftsW; peptidoglycan glycosyltransferase [EC:2.4.99.28]
D RN607_03385 efeU; (GenBank) iron uptake transporter permease EfeU K07243 FTR; high-affinity iron transporter
D RN607_03380 efeO; (GenBank) iron uptake system protein EfeO K07224 efeO; iron uptake system component EfeO
D RN607_03375 efeB; (GenBank) iron uptake transporter deferrochelatase/peroxidase subunit K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D RN607_01725 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D RN607_07700 sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D RN607_12620 cytochrome c biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D RN607_05220 hypothetical protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D RN607_00025 FeoA family protein K04758 feoA; ferrous iron transport protein A
D RN607_00030 ferrous iron transporter B K04759 feoB; ferrous iron transport protein B
D RN607_05870 YesL family protein K25089 musI; membrane protein
D RN607_10095 uraH; (GenBank) hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:dcp02044]
D RN607_06605 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RN607_00255 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_06585 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_06570 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB
D RN607_06580 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RN607_06610 pilM; (GenBank) type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RN607_06615 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RN607_06575 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RN607_10845 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RN607_01680 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RN607_03510 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RN607_01685 hypothetical protein K12510 tadB; tight adherence protein B
D RN607_03515 type II secretion system F family protein K12510 tadB; tight adherence protein B
D RN607_03520 type II secretion system F family protein K12511 tadC; tight adherence protein C
D RN607_03575 TadE/TadG family type IV pilus assembly protein K12513 tadE; tight adherence protein E
D RN607_03570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RN607_08395 YggT family protein K02221 yggT; YggT family protein
D RN607_04925 ComEA family DNA-binding protein K02237 comEA; competence protein ComEA
D RN607_04930 ComEC/Rec2 family competence protein K02238 comEC; competence protein ComEC
D RN607_00005 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RN607_14660 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RN607_14570 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RN607_14580 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D RN607_14585 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RN607_14635 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RN607_14640 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RN607_14645 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RN607_14650 fliQ; (GenBank) flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RN607_14655 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RN607_10915 secA; (GenBank) preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RN607_06480 secD; (GenBank) protein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D RN607_12090 secE; (GenBank) preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D RN607_06485 secF; (GenBank) protein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D RN607_07405 secG; (GenBank) preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D RN607_11745 secY; (GenBank) preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D RN607_08925 ffh; (GenBank) signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RN607_08945 ftsY; (GenBank) signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RN607_14095 yidC; (GenBank) membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RN607_06775 tatA; (GenBank) Sec-independent protein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D RN607_03240 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D RN607_06780 tatC; (GenBank) twin-arginine translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:dcp02042]
D RN607_05010 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_10815 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_10820 hemolysin family protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RN607_02920 hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:dcp02022]
D RN607_02245 ATP-binding protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D RN607_02250 response regulator transcription factor K07776 regX3; two-component system, OmpR family, response regulator RegX3
D RN607_10935 mtrB; (GenBank) MtrAB system histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D RN607_10940 mtrA; (GenBank) MtrAB system response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D RN607_10340 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_11115 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_13200 HAMP domain-containing sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D RN607_01140 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RN607_10335 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RN607_11110 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RN607_13195 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RN607_13785 response regulator transcription factor K02483 K02483; two-component system, OmpR family, response regulator
D RN607_04520 GAF domain-containing protein K07682 devS; two-component system, NarL family, sensor histidine kinase DevS [EC:2.7.13.3]
D RN607_04515 response regulator transcription factor K07695 devR; two-component system, NarL family, response regulator DevR
D RN607_00040 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RN607_00060 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00050 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RN607_11080 histidine kinase N-terminal domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D RN607_07515 response regulator K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:dcp02035]
D RN607_00040 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D RN607_00045 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D RN607_00065 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D RN607_00055 protein-glutamate O-methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D RN607_00050 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D RN607_00060 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00070 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D RN607_00080 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00085 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_00200 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_04015 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_05550 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_07645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_11530 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_12910 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D RN607_14580 FliH/SctL family protein K02411 fliH; flagellar assembly protein FliH
D RN607_14585 FliI/YscN family ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D RN607_14590 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D RN607_14640 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D RN607_14645 fliP; (GenBank) flagellar type III secretion system pore protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D RN607_14650 fliQ; (GenBank) flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D RN607_14655 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D RN607_00005 flhA; (GenBank) flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D RN607_14660 EscU/YscU/HrcU family type III secretion system export apparatus switch protein K02401 flhB; flagellar biosynthesis protein FlhB
D RN607_14575 fliG; (GenBank) flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D RN607_14630 FliM/FliN family flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D RN607_14635 fliN; (GenBank) flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D RN607_14570 fliF; (GenBank) flagellar basal-body MS-ring/collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D RN607_14625 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL
D RN607_14565 fliE; (GenBank) flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D RN607_14595 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D RN607_14555 flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D RN607_14560 flgC; (GenBank) flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D RN607_14600 flagellar hook capping FlgD N-terminal domain-containing protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D RN607_14605 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D RN607_14520 flgK; (GenBank) flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D RN607_14515 flgL; (GenBank) flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D RN607_14535 flagellin K02406 fliC; flagellin
D RN607_14540 fliD; (GenBank) flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D RN607_14545 fliS; (GenBank) flagellar export chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D RN607_08810 FliA/WhiG family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14530 sigma-70 family RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
D RN607_14615 flagellar motor protein K02556 motA; chemotaxis protein MotA
D RN607_14620 flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D RN607_14510 flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW
D RN607_14610 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD
D RN607_06575 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RN607_10845 PilT/PilU family type 4a pilus ATPase K02669 pilT; twitching motility protein PilT
D RN607_00255 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_06585 prepilin-type N-terminal cleavage/methylation domain-containing protein K02650 pilA; type IV pilus assembly protein PilA
D RN607_06570 ATPase, T2SS/T4P/T4SS family K02652 pilB; type IV pilus assembly protein PilB
D RN607_06580 type II secretion system F family protein K02653 pilC; type IV pilus assembly protein PilC
D RN607_06605 prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D RN607_06615 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D RN607_06610 pilM; (GenBank) type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D RN607_03570 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA
D RN607_01680 TadA family conjugal transfer-associated ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D RN607_03510 ATPase, T2SS/T4P/T4SS family K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:dcp04812]
D RN607_08410 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RN607_07360 AAA family ATPase K03496 parA; chromosome partitioning protein
D RN607_14080 AAA family ATPase K03496 parA; chromosome partitioning protein
D RN607_14075 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:dcp04147]
D RN607_14145 HSP90 family protein K04079 HSP90A; molecular chaperone HtpG
D RN607_11100 fructose bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RN607_02825 eno; (GenBank) phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D RN607_07420 gap; (GenBank) type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D RN607_07415 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D RN607_07530 pyk; (GenBank) pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D RN607_14410 peptidylprolyl isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D RN607_02350 groL; (GenBank) chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RN607_12800 dnaK; (GenBank) molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D RN607_07380 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_10060 pgi; (GenBank) glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D RN607_11565 GuaB3 family IMP dehydrogenase-related protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RN607_11585 guaB; (GenBank) IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D RN607_11865 tuf; (GenBank) elongation factor Tu K02358 tuf; elongation factor Tu
D RN607_13160 GNAT family N-acetyltransferase K13525 VCP; transitional endoplasmic reticulum ATPase
D RN607_04995 histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RN607_11410 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D RN607_05770 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_06120 AMP-dependent synthetase/ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_07025 AMP-binding protein K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_09765 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
D RN607_05660 acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_07010 acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RN607_02795 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D RN607_11740 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RN607_09030 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D RN607_07990 argH; (GenBank) argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D RN607_07995 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D RN607_12755 hydA; (GenBank) dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D RN607_01440 galK; (GenBank) galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_11290 galactokinase family protein K00849 galK; galactokinase [EC:2.7.1.6]
D RN607_10450 glgB; (GenBank) 1,4-alpha-glucan branching protein GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D RN607_00800 FGGY family carbohydrate kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RN607_09380 glpK; (GenBank) glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D RN607_05810 glutamine synthetase family protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_05945 glnA; (GenBank) type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RN607_04765 hemB; (GenBank) porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RN607_08515 serA; (GenBank) phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D RN607_11380 purH; (GenBank) bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D RN607_05990 lpdA; (GenBank) dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RN607_10370 electron transfer flavoprotein subunit alpha/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D RN607_11575 Glu/Leu/Phe/Val dehydrogenase K00261 GLUD1_2; glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]
D RN607_07385 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_08070 zwf; (GenBank) glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D RN607_07410 tpiA; (GenBank) triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D RN607_02235 phosphoglyceromutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:dcp02048]
D RN607_09280 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RN607_14315 type II toxin-antitoxin system HipA family toxin K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D RN607_09655 Fic family protein K07341 doc; death on curing protein
D RN607_03060 type II toxin-antitoxin system RelE/ParE family toxin K07334 higB-1; toxin HigB-1
D RN607_03065 HigA family addiction module antitoxin K21498 higA-1; antitoxin HigA-1
D RN607_08410 ftsZ; (GenBank) cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RN607_04325 gltX; (GenBank) glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RN607_07250 nucleotidyl transferase AbiEii/AbiGii toxin family protein K28188 tglT; guanylyltransferase TglT toxin
D RN607_07245 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein K28189 takA; serine protein kinase TakA antitoxin
D RN607_06050 aminotransferase class V-fold PLP-dependent enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RN607_10320 cysteine desulfurase family protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:dcp01504]
D RN607_11515 ABC-F family ATP-binding cassette domain-containing protein K18230 tylC; macrolide transport system ATP-binding/permease protein
D RN607_02690 M15 family metallopeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:dcp03100]
D RN607_02625 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_04620 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_14250 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RN607_00495 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_02460 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_04005 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_10750 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RN607_05290 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RN607_01410 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RN607_06375 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RN607_02730 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RN607_04335 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RN607_01415 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RN607_04350 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RN607_06380 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_09565 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_13265 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RN607_03910 tRNA-His K14226 tRNA-His; tRNA His
D RN607_14245 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RN607_00090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_02855 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_03810 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_07520 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_07690 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RN607_01535 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RN607_03830 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RN607_05285 tRNA-Ile K14230 tRNA-Met; tRNA Met
D RN607_11155 tRNA-Met K14230 tRNA-Met; tRNA Met
D RN607_12225 tRNA-Met K14230 tRNA-Met; tRNA Met
D RN607_01405 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RN607_07280 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_09560 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_12980 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RN607_00445 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_00450 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_12860 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_12920 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RN607_01810 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_02330 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_12230 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RN607_12095 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RN607_12280 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RN607_05380 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_06370 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_06395 tRNA-Val K14237 tRNA-Val; tRNA Val
D RN607_04570 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_07955 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RN607_04575 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_07950 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RN607_04580 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RN607_07945 rrf; (GenBank) 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RN607_05425 rnpB; (GenBank) RNase P RNA component class A K01978 rnpB; RNase P catalytic RNA component
D RN607_12950 ffs; (GenBank) signal recognition particle sRNA small type K01983 ffs; signal recognition particle 4.5S RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RN607_05915 SDR family NAD(P)-dependent oxidoreductase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D RN607_14180 SDR family NAD(P)-dependent oxidoreductase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D RN607_01675 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D RN607_13085 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D RN607_11995 fgd; (GenBank) glucose-6-phosphate dehydrogenase (coenzyme-F420) K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D RN607_12785 TIGR03557 family F420-dependent LLM class oxidoreductase K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2]
D RN607_05705 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D RN607_12490 geranylgeranyl reductase family protein K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D RN607_04655 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D RN607_06955 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D RN607_09680 NAD(P)-binding domain-containing protein K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D RN607_03370 NAD(P)H-quinone dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D RN607_08035 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D RN607_02890 msrA; (GenBank) peptide-methionine (S)-S-oxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D RN607_01565 msrB; (GenBank) peptide-methionine (R)-S-oxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D RN607_00295 Dyp-type peroxidase K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]
D RN607_03820 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D RN607_06315 Ohr family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RN607_06885 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D RN607_05375 redoxin domain-containing protein K24120 ahpE; mycoredoxin-dependent peroxiredoxin [EC:1.11.1.29]
D RN607_05635 quercetin 2,3-dioxygenase K07155 qodI; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D RN607_12335 FAD-dependent oxidoreductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D RN607_00170 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D RN607_07035 nrdG; (GenBank) anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D RN607_03605 pflA; (GenBank) pyruvate formate-lyase-activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D RN607_08085 sugar O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D RN607_06795 lnt; (GenBank) apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RN607_01645 GNAT family N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D RN607_07545 lgt; (GenBank) prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RN607_08890 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RN607_08905 FAD:protein FMN transferase K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D RN607_04470 DAK2 domain-containing protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D RN607_05815 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D RN607_08140 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D RN607_04130 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D RN607_04410 carboxylesterase family protein K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D RN607_12000 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D RN607_10350 tyrosine-protein phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D RN607_04610 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D RN607_04615 histidine phosphatase family protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D RN607_11230 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D RN607_07790 histidine phosphatase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D RN607_02700 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RN607_10530 nucS; (GenBank) endonuclease NucS K07503 nucS; endonuclease [EC:3.1.-.-]
D RN607_01175 yicI; (GenBank) alpha-xylosidase K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D RN607_10245 glycoside hydrolase family 31 protein K01811 xylS; alpha-D-xyloside xylohydrolase [EC:3.2.1.177]
D RN607_05315 def; (GenBank) peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RN607_09925 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D RN607_09965 8-oxoguanine deaminase K18456 E3.5.4.32; 8-oxoguanine deaminase [EC:3.5.4.32]
D RN607_08475 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RN607_10960 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RN607_12020 MoxR family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D RN607_00320 alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D RN607_07065 alpha/beta fold hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D RN607_13300 oleate hydratase K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D RN607_05310 NAD(P)H-hydrate dehydratase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D RN607_00410 AGE family epimerase/isomerase K18479 yihS; sulfoquinovose isomerase [EC:5.3.1.31]
D RN607_00805 TIM barrel protein K24672 apsI; D-apiose isomerase [EC:5.3.1.36]
D RN607_06295 carboxylate--amine ligase K17810 asl; D-aspartate ligase [EC:6.3.1.12]
D RN607_09915 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D RN607_12880 glycoside hydrolase family 3 N-terminal domain-containing protein K17641 bxlA; beta-xylosidase
C 99982 Energy metabolism
D RN607_07845 SUF system NifU family Fe-S cluster assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D RN607_10375 electron transfer flavoprotein subunit beta/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D RN607_04915 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D RN607_04920 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
D RN607_10025 nrdI; (GenBank) class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D RN607_04255 YggS family pyridoxal phosphate-dependent enzyme K06997 yggS; PLP dependent protein
D RN607_05760 GNAT family protein K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D RN607_13430 lysylphosphatidylglycerol synthase domain-containing protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
D RN607_10385 hypothetical protein K03932 lpqC; polyhydroxybutyrate depolymerase
D RN607_09865 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D RN607_13270 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D RN607_10755 DoxX family protein K15977 K15977; putative oxidoreductase
D RN607_06930 alpha/beta hydrolase-fold protein K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RN607_02360 cold-shock protein K03704 cspA; cold shock protein
D RN607_08500 cold-shock protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RN607_03770 clpS; (GenBank) ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D RN607_09470 tig; (GenBank) trigger factor K03545 tig; trigger factor
D RN607_03675 smpB; (GenBank) SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D RN607_09200 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D RN607_09260 HypC/HybG/HupF family hydrogenase formation chaperone K04653 hypC; hydrogenase expression/formation protein HypC
D RN607_10030 nrdH; (GenBank) glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D RN607_08825 YifB family Mg chelatase-like AAA ATPase K07391 comM; magnesium chelatase family protein
D RN607_12615 cytochrome c biogenesis protein ResB K07399 resB; cytochrome c biogenesis protein
D RN607_10005 XdhC/CoxI family protein K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D RN607_09685 HNH endonuclease K07454 K07454; putative restriction endonuclease
D RN607_03025 rmuC; (GenBank) DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D RN607_08830 YraN family protein K07460 yraN; putative endonuclease
D RN607_07640 PD-(D/E)XK nuclease family protein K07465 K07465; putative RecB family exonuclease
D RN607_08820 DNA-processing protein DprA K04096 smf; DNA processing protein
D RN607_06540 replication-associated recombination protein A K07478 ycaJ; putative ATPase
D RN607_09530 transposase K07483 K07483; transposase
C 99979 Viral proteins
C 99998 Others
D RN607_08215 type I restriction enzyme HsdR N-terminal domain-containing protein K07504 K07504; predicted type IV restriction endonuclease
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RN607_11090 APC family permease K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RN607_00150 anion permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D RN607_08150 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D RN607_14090 R3H domain-containing nucleic acid-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D RN607_03160 typA; (GenBank) translational GTPase TypA K06207 typA; GTP-binding protein
D RN607_05000 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D RN607_02930 PhoH family protein K07175 phoH2; PhoH-like ATPase
D RN607_12285 YajQ family cyclic di-GMP-binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
C 99994 Others
D RN607_02240 phoU; (GenBank) phosphate signaling complex protein PhoU K02039 phoU; phosphate transport system protein
D RN607_13280 NAD(P)-binding domain-containing protein K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RN607_04095 globin K06886 glbN; hemoglobin
D RN607_03685 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RN607_05970 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RN607_10325 MMPL family transporter K06994 K06994; putative drug exporter of the RND superfamily
D RN607_09115 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RN607_09675 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RN607_10805 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D RN607_04330 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily
D RN607_07870 sufB; (GenBank) Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D RN607_07865 sufD; (GenBank) Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D RN607_03250 YhjD/YihY/BrkB family envelope integrity protein K07058 K07058; membrane protein
D RN607_12675 phosphoribosyltransferase family protein K07100 K07100; putative phosphoribosyl transferase
D RN607_13175 VOC family protein K04750 phnB; PhnB protein
D RN607_00870 LemA family protein K03744 lemA; LemA protein
D RN607_00880 VTT domain-containing protein K03975 dedA; membrane-associated protein
D RN607_13795 VTT domain-containing protein K03975 dedA; membrane-associated protein
D RN607_06940 YhgE/Pip domain-containing protein K01421 yhgE; putative membrane protein
D RN607_10330 YhgE/Pip family protein K01421 yhgE; putative membrane protein
D RN607_13465 phage holin family protein K08972 K08972; putative membrane protein
D RN607_02175 PH domain-containing protein K08981 K08981; putative membrane protein
D RN607_01840 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RN607_09795 SHOCT domain-containing protein K08982 K08982; putative membrane protein
D RN607_09490 DUF1304 domain-containing protein K08987 K08987; putative membrane protein
D RN607_00180 YchJ family protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D RN607_02455 sulfite exporter TauE/SafE family protein K06867 K06867; uncharacterized protein
D RN607_05740 CoA-binding protein K06929 K06929; uncharacterized protein
D RN607_09610 CoA-binding protein K06929 K06929; uncharacterized protein
D RN607_00435 ATP/GTP-binding protein K06945 K06945; uncharacterized protein
D RN607_08880 KH domain-containing protein K06960 K06960; uncharacterized protein
D RN607_04665 GNAT family N-acetyltransferase K06975 K06975; uncharacterized protein
D RN607_08750 GNAT family N-acetyltransferase K06976 K06976; uncharacterized protein
D RN607_08045 GNAT family N-acetyltransferase K06977 K06977; uncharacterized protein
D RN607_03620 cupin domain-containing protein K06995 K06995; uncharacterized protein
D RN607_03980 VOC family protein K06996 K06996; uncharacterized protein
D RN607_10360 ExeM/NucH family extracellular endonuclease K07004 K07004; uncharacterized protein
D RN607_10495 alpha/beta hydrolase K07018 K07018; uncharacterized protein
D RN607_03105 VOC family protein K07032 K07032; uncharacterized protein
D RN607_11920 amidohydrolase family protein K07045 K07045; uncharacterized protein
D RN607_05980 TIGR01777 family oxidoreductase K07071 K07071; uncharacterized protein
D RN607_09340 nucleotidyltransferase domain-containing protein K07075 K07075; uncharacterized protein
D RN607_09360 permease K07089 K07089; uncharacterized protein
D RN607_00100 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RN607_07755 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RN607_09830 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RN607_11580 TSUP family transporter K07090 K07090; uncharacterized protein
D RN607_13345 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D RN607_12985 metallophosphoesterase K07098 K07098; uncharacterized protein
D RN607_00855 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D RN607_06890 SDR family oxidoreductase K07124 K07124; uncharacterized protein
D RN607_00425 roadblock/LC7 domain-containing protein K07131 K07131; uncharacterized protein
D RN607_00165 DUF4143 domain-containing protein K07133 K07133; uncharacterized protein
D RN607_01390 ATP-binding protein K07133 K07133; uncharacterized protein
D RN607_01395 ATP-binding protein K07133 K07133; uncharacterized protein
D RN607_13665 DUF4143 domain-containing protein K07133 K07133; uncharacterized protein
D RN607_13490 MOSC domain-containing protein K07140 K07140; MOSC domain-containing protein
D RN607_13610 hypothetical protein K07149 K07149; uncharacterized protein
D RN607_05400 C4-type zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D RN607_14100 yidD; (GenBank) membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein
D RN607_02840 DUF501 domain-containing protein K09009 K09009; uncharacterized protein
D RN607_11160 UPF0182 family protein K09118 K09118; uncharacterized protein
D RN607_06330 DUF1684 domain-containing protein K09164 K09164; uncharacterized protein
D RN607_02170 PH domain-containing protein K09167 K09167; uncharacterized protein
D RN607_09295 DUF2075 domain-containing protein K09384 K09384; uncharacterized protein
D RN607_02785 cupin domain-containing protein K09705 K09705; uncharacterized protein
D RN607_07450 YciI family protein K09780 K09780; uncharacterized protein
D RN607_01485 SIMPL domain-containing protein K09807 K09807; uncharacterized protein
D RN607_05415 peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D RN607_12235 crosslink repair DNA glycosylase YcaQ family protein K09927 K09927; uncharacterized protein
D RN607_04970 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D RN607_04975 DUF4870 domain-containing protein K09940 K09940; uncharacterized protein
D RN607_10250 glycoside hydrolase family 127 protein K09955 K09955; uncharacterized protein
D RN607_01560 DUF2218 domain-containing protein K09956 K09956; uncharacterized protein
D RN607_08105 ACT domain-containing protein K09964 K09964; uncharacterized protein
D RN607_08720 YlxR family protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 9, 2025