+F Repair protein KO
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DNA Repair and Recombination Proteins - Dendrobium catenatum
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 110114454 DNA oxidative demethylase ALKBH2 isoform X1 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 110113266 DExH-box ATP-dependent RNA helicase DExH14 isoform X1 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 110097089 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 110097485 uracil-DNA glycosylase, mitochondrial isoform X2 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 110109923 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 110110864 adenine DNA glycosylase isoform X2 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 110101618 uncharacterized protein LOC110101618 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 110104259 N-glycosylase/DNA lyase OGG1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 110100061 endonuclease III homolog 1, chloroplastic-like isoform X2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 110095093 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 110097589 DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F 110095356 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 110105872 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F 110097470 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
F 110092892 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
F 110111817 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
F 110111850 uncharacterized protein LOC110111850 K03505 POLD4; DNA polymerase delta subunit 4
F 110096460 uncharacterized protein LOC110096460 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 110113617 DNA polymerase epsilon catalytic subunit A isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 110111724 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 110094123 DNA polymerase epsilon subunit 3 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 110105895 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110114155 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110115887 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 110100878 flap endonuclease 1-A isoform X1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 110104314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 110106293 LOW QUALITY PROTEIN: DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 110103810 tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 110096109 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 110116554 polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 110095115 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 110091984 poly [ADP-ribose] polymerase 1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 110102767 poly [ADP-ribose] polymerase 2-A isoform X1 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 110094782 DNA repair protein RAD4 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 110101012 ubiquitin receptor RAD23d K10839 RAD23; UV excision repair protein RAD23
F 110103074 ubiquitin receptor RAD23b K10839 RAD23; UV excision repair protein RAD23
F 110093320 ubiquitin receptor RAD23d isoform X1 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 110096489 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110100420 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110112158 cullin-4 K10609 CUL4; cullin 4
F 110104920 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 110108807 DNA damage-binding protein 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 110094205 uncharacterized protein LOC110094205 K15082 RAD7; DNA repair protein RAD7
F 110107151 ATP-dependent helicase rhp16 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 110095028 DNA-directed RNA polymerase II subunit 1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 110096277 DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 110093229 DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 110111783 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 110111784 DNA-directed RNA polymerases IV and V subunit 4-like K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 110106265 DNA-directed RNA polymerase II subunit 4 isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 110100508 DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110111983 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110094161 DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 110098966 DNA-directed RNA polymerases II, IV and V subunit 6A-like K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 110110358 DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 110110378 DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 114578826 DNA-directed RNA polymerases II, IV and V subunit 8B-like K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 110096911 DNA-directed RNA polymerases II, IV and V subunit 9A-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110112763 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110105012 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110109355 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110109378 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110115862 DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110108131 DNA-directed RNA polymerases II, IV and V subunit 9A-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 114580137 DNA-directed RNA polymerases II, IV and V subunit 9A-like K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 110116096 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 110115883 DNA-directed RNA polymerase subunit 10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 110108565 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 110096352 DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 110096489 RING-box protein 1a-like K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110100420 RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 110112158 cullin-4 K10609 CUL4; cullin 4
F 110104920 DNA damage-binding protein 1 K10610 DDB1; DNA damage-binding protein 1
F 110113900 WD repeat-containing protein ATCSA-1 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 110097532 DNA excision repair protein CSB isoform X2 K10841 ERCC6; DNA excision repair protein ERCC-6
F 110094410 UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 110092053 transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 110104065 general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 110092615 general transcription and DNA repair factor IIH helicase subunit XPD isoform X1 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 110097683 general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 110101134 general transcription factor IIH subunit 2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 110096473 general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 110102304 general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 110096338 general transcription and DNA repair factor IIH subunit TFB5-like isoform X2 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 110108334 cyclin-dependent kinase D-1 isoform X1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 110111887 cyclin-H1-1 K06634 CCNH; cyclin H
E 110107532 uncharacterized protein LOC110107532 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 110092559 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110105461 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110112593 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110098092 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 110110138 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 110100181 replication protein A 14 kDa subunit K10740 RPA3; replication factor A3
D Other NER factors
E 110103353 DNA excision repair protein ERCC-1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 110105572 DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 110105246 DNA repair endonuclease UVH1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 110093477 DNA repair protein UVH3 isoform X1 K10846 ERCC5; DNA excision repair protein ERCC-5
E 110104314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 110095659 MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 110109571 cullin-3A K03869 CUL3; cullin 3
E 110095636 cullin-3A-like K03869 CUL3; cullin 3
E 110114196 elongin-C K03872 ELOC; elongin-C
E 110094653 uncharacterized protein LOC110094653 K03873 ELOB; elongin-B
E 110114554 uncharacterized protein LOC110114554 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 110093633 DNA mismatch repair protein MSH2 isoform X1 K08735 MSH2; DNA mismatch repair protein MSH2
E 110099820 DNA mismatch repair protein MSH3 isoform X1 K08736 MSH3; DNA mismatch repair protein MSH3
E 110108313 DNA mismatch repair protein MSH6-like K08737 MSH6; DNA mismatch repair protein MSH6
E 110107080 DNA mismatch repair protein MSH7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 110097545 DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 110102763 DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 110111259 DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 110095356 DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 110105872 DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E 110097470 DNA polymerase delta small subunit-like K02328 POLD2; DNA polymerase delta subunit 2
E 110092892 DNA polymerase delta subunit 3 K03504 POLD3; DNA polymerase delta subunit 3
E 110111817 DNA polymerase delta subunit 4-like K03505 POLD4; DNA polymerase delta subunit 4
E 110111850 uncharacterized protein LOC110111850 K03505 POLD4; DNA polymerase delta subunit 4
E 110096460 uncharacterized protein LOC110096460 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 110092559 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110105461 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110112593 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110098092 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 110110138 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 110100181 replication protein A 14 kDa subunit K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 110108173 replication factor C subunit 1 K10754 RFC1; replication factor C subunit 1
E 110110673 LOW QUALITY PROTEIN: replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
E 110093745 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 110092734 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
E 110094297 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 110099406 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 110105895 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110114155 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 110115887 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 110098820 exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 110104314 DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 110116098 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 110111411 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110105633 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 110109260 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA1-core complex
E 110091968 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 110106692 BRCA1-associated RING domain protein 1 isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 110110039 protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 110094561 uncharacterized protein LOC110094561 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 110109250 uncharacterized protein LOC110109250 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 110097498 BRISC and BRCA1-A complex member 2 isoform X1 K12173 BRE; BRCA1-A complex subunit BRE
E 110104201 uncharacterized protein F37A4.5-like K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 110101508 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 110097517 DNA topoisomerase 2-binding protein 1 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 110113309 BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 110111411 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110105633 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 110109260 nijmegen breakage syndrome 1 protein isoform X1 K10867 NBN; nibrin
D BRCA complex
E 110092985 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 110092955 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 110092955 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
E 110098529 DNA repair protein RAD51 homolog 2 K10869 RAD51L1; RAD51-like protein 1
E 110114211 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 110101075 DNA repair protein RAD51 homolog 4 K10871 RAD51L3; RAD51-like protein 3
E 110101636 DNA repair protein XRCC2 homolog isoform X3 K10879 XRCC2; DNA-repair protein XRCC2
E 110095404 DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 110095407 DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 110111859 DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 110095546 SNF2 domain-containing protein CLASSY 2-like K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110099002 DNA repair and recombination protein RAD54 isoform X1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110092988 SNF2 domain-containing protein CLASSY 2 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 110115740 protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 110110944 ATP-dependent DNA helicase Q-like 1 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 110101779 mediator of RNA polymerase II transcription subunit 34 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 110100837 ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 110105692 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110094174 ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 110105692 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110100998 DNA topoisomerase 3-beta isoform X2 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110092904 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110093979 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 110097763 uncharacterized protein LOC110097763 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 110092559 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110105461 replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 110112593 replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 110098092 replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 110110138 replication protein A 32 kDa subunit A isoform X1 K10739 RFA2; replication factor A2
E 110100181 replication protein A 14 kDa subunit K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 110092619 serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 110109481 serine/threonine-protein phosphatase 4 regulatory subunit 2-A isoform X1 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 110109354 serine/threonine-protein phosphatase 4 regulatory subunit 3B K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 110095581 uncharacterized protein LOC110095581 K19022 AP5B1; AP-5 complex subunit beta-1
E 110113416 AP-5 complex subunit mu K19023 AP5M1; AP-5 complex subunit mu-1
E 110107025 AP-5 complex subunit zeta-1 isoform X1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 110101626 structural maintenance of chromosomes protein 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E 110096031 structural maintenance of chromosomes protein 6B isoform X2 K22804 SMC6; structural maintenance of chromosomes protein 6
E 110109051 uncharacterized protein LOC110109051 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 110095427 uncharacterized protein LOC110095427 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 110095416 E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 110116584 non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 110115356 crossover junction endonuclease EME1B K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 110105044 crossover junction endonuclease MUS81 isoform X1 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 110106977 protein DELETION OF SUV3 SUPPRESSOR 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E 110093925 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like K10881 SHFM1; 26 proteasome complex subunit DSS1
E 110107429 structure-specific endonuclease subunit SLX1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 110097691 structure-specific endonuclease subunit SLX1 homolog isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 110105131 flap endonuclease GEN-like 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 110115178 flap endonuclease GEN-like 2 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 110096041 uncharacterized protein LOC110096041 isoform X1 K19026 SPG11; spatacsin
E 110102932 uncharacterized protein LOC110102932 isoform X2 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 110092940 protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 110094648 deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 110100611 ATPase family AAA domain-containing protein FIGL1 isoform X1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 110115085 Werner Syndrome-like exonuclease K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 110096524 DNA-dependent metalloprotease WSS1 isoform X2 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 110097636 single-stranded DNA-binding protein WHY1, chloroplastic K26559 WHY1; single-stranded DNA-binding protein WHY1
E 110109141 single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 110102738 ATP-dependent DNA helicase 2 subunit KU70 K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E 110116670 ATP-dependent DNA helicase 2 subunit KU80 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 110111411 double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 110105633 DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 110100303 DNA ligase 4 isoform X1 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 110100679 DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 110095115 DNA polymerase lambda K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 110096109 transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 110106227 uncharacterized protein LOC110106227 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
E 110097535 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 110102451 protein MHF2 homolog K15360 STRA13; centromere protein X
E 110111482 probable ubiquitin-conjugating enzyme E2 37 isoform X1 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E 110105692 ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 110100998 DNA topoisomerase 3-beta isoform X2 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110092904 DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 110093979 recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 110097763 uncharacterized protein LOC110097763 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E 110112151 Fanconi anemia group D2 protein-like isoform X1 K10891 FANCD2; fanconi anemia group D2 protein
E 110112428 Fanconi anemia group I protein homolog K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E 110092985 protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1 K08775 BRCA2; breast cancer 2 susceptibility protein
E 110101508 Fanconi anemia group J protein homolog K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 110103274 fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 110092955 DNA repair protein RAD51 homolog isoform X1 K04482 RAD51; DNA repair protein RAD51
E 110114211 DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 110105763 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
E 110101612 WD repeat-containing protein 48 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 110113909 phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 110093295 serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E 110114793 telomerase Cajal body protein 1 K23314 WRAP53; telomerase Cajal body protein 1
E 110098808 WD repeat-containing protein 70 K24752 WDR70; WD repeat-containing protein 70
E 110116098 WD repeat-containing protein 76 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 110093020 DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 110094040 DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 110109480 DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 110102487 ubiquitin-conjugating enzyme E2 2-like isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110105900 ubiquitin-conjugating enzyme E2 2 isoform X1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110111676 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110097620 ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 110096406 DNA repair protein RAD5A isoform X1 K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 110111366 DNA repair protein RAD5B K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 110110812 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 110111541 ubiquitin-conjugating enzyme E2 variant 1C isoform X1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110100895 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110102008 ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110097603 ubiquitin-conjugating enzyme E2 variant 1C K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110100959 ubiquitin-conjugating enzyme E2 variant 1C-like K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 110109748 ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 110105895 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 110114155 proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 110115887 proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 110101540 cell cycle checkpoint control protein RAD9A-like K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 110101400 checkpoint protein HUS1B K10903 HUS1; HUS1 checkpoint protein
D 110099106 uncharacterized protein LOC110099106 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 110112176 cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 110110673 LOW QUALITY PROTEIN: replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
D 110093745 replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 110092734 replication factor C subunit 2-like K10755 RFC2_4; replication factor C subunit 2/4
D 110094297 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 110099406 replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 110099106 uncharacterized protein LOC110099106 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 110105967 protein timeless homolog isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 110104185 chromosome segregation in meiosis protein 3 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 110105763 telomere length regulation protein TEL2 homolog K11137 TELO2; telomere length regulation protein
D 110110675 uncharacterized protein LOC110110675 K20403 TTI1; TELO2-interacting protein 1
D 110110122 uncharacterized protein At2g39910 isoform X1 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 110098315 ubiquitin-like domain-containing protein CIP73 isoform X1 K23390 BAG6; large proline-rich protein BAG6
D 110096499 Golgi to ER traffic protein 4 homolog K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D 110096219 serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 110106501 serine/threonine-protein kinase ATM K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 110106938 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 110107934 14-3-3 protein zeta K06630 YWHAE; 14-3-3 protein epsilon
D 110102973 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 110111641 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110116516 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 110103022 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110109337 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 110109670 14-3-3-like protein B K06630 YWHAE; 14-3-3 protein epsilon
D 110102147 14-3-3 protein 7 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 110104182 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 110104184 14-3-3-like protein GF14 lambda K06630 YWHAE; 14-3-3 protein epsilon
D 110094738 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 110111179 14-3-3-like protein 16R isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 110105834 14-3-3-like protein 16R K06630 YWHAE; 14-3-3 protein epsilon
D 110105857 14-3-3 protein 10 K06630 YWHAE; 14-3-3 protein epsilon
D 110114004 14-3-3-like protein C K06630 YWHAE; 14-3-3 protein epsilon
D 114580478 14-3-3-like protein GF14 omega K06630 YWHAE; 14-3-3 protein epsilon
D 110102641 wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 110115743 serine/threonine-protein kinase Nek1 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110093698 serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110102501 serine/threonine-protein kinase Nek6-like K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 110111729 uncharacterized protein LOC110111729 isoform X2 K22422 DONSON; protein downstream neighbor of Son
D 110102436 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 110094043 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 114578379 LOW QUALITY PROTEIN: replication stress response regulator SDE2-like K25059 SDE2; replication stress response regulator SDE2
D 110099125 protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 110108933 helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 110114404 uncharacterized protein LOC110114404 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 110104489 DNA-directed primase/polymerase protein isoform X2 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 110106726 DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110105143 uncharacterized protein LOC110105143 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110107208 uncharacterized protein LOC110107208 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 110106405 endonuclease V isoform X2 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 110103592 DNA annealing helicase and endonuclease ZRANB3 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 110100308 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 110111405 endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 110111409 endonuclease 1-like K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 110102208 endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 110111011 switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 110106686 pre-mRNA-processing factor 19 isoform X1 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 110103263 cell division cycle 5-like protein isoform X1 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 110104520 pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 110092241 protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 110102650 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 110092830 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 114578342 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 110107491 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 110104785 ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 110101316 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D 110113673 ribonucleoside-diphosphate reductase small chain K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 110097089 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 110097485 uracil-DNA glycosylase, mitochondrial isoform X2 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 110096510 probable DNA-3-methyladenine glycosylase 2 isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 110093795 probable DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 110109923 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 110110864 adenine DNA glycosylase isoform X2 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 110107962 uncharacterized protein LOC110107962 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110096332 uncharacterized protein LOC110096332 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110093095 uncharacterized protein LOC110093095 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110094432 uncharacterized protein LOC110094432 isoform X3 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 110106837 formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 110100061 endonuclease III homolog 1, chloroplastic-like isoform X2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 110095093 putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 110092190 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 110106989 DNA polymerase I A, chloroplastic K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 110106989 DNA polymerase I A, chloroplastic K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 36482783 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F 36482781 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 36482782 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 36482837 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 110095353 uncharacterized protein LOC110095353 isoform X1 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 110110050 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 110099733 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 110113990 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 110099733 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
E 110113990 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 110103111 uncharacterized protein LOC110103111 isoform X1 K04485 radA; DNA repair protein RadA/Sms
E 110106390 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 110112466 DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 110103757 DNA gyrase subunit B, chloroplastic/mitochondrial-like isoform X1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 110105795 uncharacterized protein LOC110105795 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 110099733 DNA repair protein recA homolog 1, chloroplastic K03553 recA; recombination protein RecA
D 110113990 DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 110110050 single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 110102650 nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 110092830 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 114578342 deoxyuridine 5'-triphosphate nucleotidohydrolase-like K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024