+E Ribosome biogenesis KO
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Ribosome Biogenesis - Deinococcus deserti
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D Deide_03100 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D Deide_19990 putative RIO-like kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C Deide_18500 putative GTP-binding protein era K03595 era; GTPase
C Deide_22200 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C Deide_10380 putative Transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C Deide_12270 nusB; putative N utilization substance protein B (Protein nusB)(NusB antitermination factor) K03625 nusB; transcription antitermination protein NusB
C Deide_06090 nusG; putative transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D Deide_10490 putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Deide_09520 putative methyltransferase RsmB, Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Deide_14390 putative rRNA (guanine-N(2)-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D Deide_19770 putative methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Deide_13800 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Deide_23400 gidB; putative methyltransferase (Glucose-inhibited division protein B) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Deide_08670 putative Methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Deide_14620 putative Tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D Deide_04850 putative trmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Deide_14650 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Deide_12770 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Deide_17230 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Deide_14690 putative S-adenosylmethionine-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Deide_14010 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Deide_04430 putative (Uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Deide_08650 putative RNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Deide_16790 rluD; putative ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Deide_09910 putative Ribosomal large subunit pseudouridine synthase, Rlu family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Deide_22390 putative RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C Deide_10640 putative 16S rRNA-processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C Deide_21110 putative 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C Deide_13790 putative Ribosomal protein L11 methyltransferase (L11 Mtase) K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C Deide_03100 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Deide_04280 putative Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C Deide_1p00070 putative ATP-independent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C Deide_18500 putative GTP-binding protein era K03595 era; GTPase
C Deide_03610 putative GTPase engC; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C Deide_23290 engA; putative GTP-binding protein K03977 engA; GTPase
C Deide_22200 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C Deide_19040 hflX; putative GTP-binding protein, HflX subfamily K03665 hflX; GTPase
B Other maturation factors
C Deide_08591 putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Deide_14760 putative GTP diphosphokinase (ppGpp synthetase I) (RelA/SpoT) (GTP pyrophosphokinase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C Deide_15450 rbfA; putative Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C Deide_10390 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C Deide_05390 hypothetical protein K14761 rlbA; ribosome-associated protein
C Deide_19740 putative iojap-related protein K09710 ybeB; ribosome-associated protein
C Deide_10740 putative metal-dependent hydrolase (metalloprotease) K07042 ybeY; probable rRNA maturation factor
C Deide_17160 putative sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C Deide_05530 engD; putative GTP-dependent nucleic acid-binding protein K06942 ychF; ribosome-binding ATPase
C Deide_20550 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024